mRNA_P-wetherbeei_contig663.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig663.3.1
Unique NamemRNA_P-wetherbeei_contig663.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A4S4L1T1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L1T1_9AGAM)

HSP 1 Score: 146 bits (368), Expect = 6.330e-36
Identity = 107/293 (36.52%), Postives = 146/293 (49.83%), Query Frame = 1
Query:   13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIA--GLEGCLGLKLLKALYGLKQAAYLWH--LCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVS------AITHRLQGVKLETL-------IKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAE-RSRTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
            P    ++G +WVF +KR A G + +YKARL AQGF+Q PG+D     A V    ++R+LLALAA F +EIHQ+DV  A+LN  LEEE+YM  P G A  GLE  +  +L+K +YGLKQ++  W+  LC       E GF+         C              G+   I   VDD  L     V+      A+ H  +   L  +       IK+D    T+ LSQ+ YID +L RF ++ A PL T  +  SR   +Q P+MP +   M   PY+   G      L  R D
Sbjct:  101 PTAANVVGSKWVFKIKRGAAGEITKYKARLVAQGFTQVPGIDYGDMFAPVAKLTSIRVLLALAARFDWEIHQMDVKNAFLNGDLEEEIYMKQPPGYAAPGLEDKV-CRLIKTIYGLKQSSQRWYKKLCDAFF---EMGFKV--------CSVEHGIFTKHDETKGTISIIAASVDDFALLANSLVAIDEMKDALNHAFEMTDLGEIHWLLGIEIKRDRGARTISLSQRAYIDTILSRFNLENANPLSTATDPNSRLSISQCPSMPHQFEEMRNVPYQEAIGSVMYAALAARPD 381          
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR)

HSP 1 Score: 147 bits (370), Expect = 1.230e-35
Identity = 106/292 (36.30%), Postives = 147/292 (50.34%), Query Frame = 1
Query:    7 TSPPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEG-CLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTG-----YPVSAITHRLQGVK--------LETLIKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERS-RTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
            T P   + IGC+WVF  KR + G + RYKARL A+GF+QR G+D   T + V   D+ R+++AL A F FE+HQ+DV TA+LN  LEEE+YM  P G    EG  L  KL +++YGLKQA+  W+L +   +I   GF  N  D C+              G   C  +  +VDD+LL T      Y V     R   +K        +   I +D   G + LSQ+ YI+++L RF M+   P + P  +  R + +Q P    E   M   PY    G      +C R D
Sbjct:  469 TLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYL-KFHEVITSFGFEENVMDQCI---------YQKVSGSHICFLV-LYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCSPSVAPIVKGDRFELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPD 749          
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A438JHV4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JHV4_VITVI)

HSP 1 Score: 145 bits (365), Expect = 6.850e-35
Identity = 104/289 (35.99%), Postives = 149/289 (51.56%), Query Frame = 1
Query:   31 IGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIA--GLEGCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVSAI-------TH----------RLQGVKLETLIKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERS-RTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
            +GC+WVF  KR + G + RYKARL  +G+SQR G+D   T + V T D+ R+++A+ A F  E+HQ+DV TA+LN VL+EE+YM  P+G    G E  L  KL K++YGLKQA+  W+L +   +I + GF+ N  D C+         +  +G   S + +  +VDD+LL +  P   I       TH           + G+K    I +D  NG + LSQ+ YI+ +L RF M        P  +  +   AQ P    E   M T PY    G      +C R D
Sbjct:  961 VGCKWVFKTKRDSSGKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGVLDEEVYMEQPIGFVEVGKED-LVCKLNKSIYGLKQASRQWYL-KFDKIITQNGFKENTVDRCIY--------LRVSGS--SYIFLVLYVDDILLASNDPDLLIETKHILSTHFDMKDLGEASYVLGIK----ILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKGDKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPD 1233          
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 142 bits (359), Expect = 3.650e-34
Identity = 98/248 (39.52%), Postives = 134/248 (54.03%), Query Frame = 1
Query:   13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEGCLGL-KLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVSAITHR---LQGVKLETL----------IKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAE 714
            P  ++ IGCRWV+ LKR + G ++RYKARL AQGFSQ PG+D   T A V+  D++RLLLA+AAE   E+ Q DVV AYLNA L+EE+YM  P G    EG   + +L KALYGLKQA   W+     +L  + GF+  ++D    CV  +++P            +G HVDD+      P    T R    +  K+  L          I +D    T+ + Q  YI  +L RF M +  P+ TP +
Sbjct:   53 PAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYE--EGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSD---PCVYLKKSPKGLT-------IVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLD 288          
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A060SJQ5_PYCCI (Uncharacterized protein (Fragment) n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SJQ5_PYCCI)

HSP 1 Score: 140 bits (354), Expect = 1.930e-33
Identity = 106/292 (36.30%), Postives = 149/292 (51.03%), Query Frame = 1
Query:   13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLE--EELYMSAPLGI-AGLEGCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYP--VSAITHRLQGVK-----------LETLIKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAE-RSRTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
            PP   ++ CRWVF  K+ A G V RY+ARL A+GFSQ PGVD   T A V    ++R+ LA AA   FE+HQLDV +AYLN   E  E ++M+ P G     +  L L+LL+ LYGLKQ+A  WH     +L E+     +D D        Q       G +   + I  HVDDL + T     V+ +  +L+              L   +++D  N  + LSQ  YI+ ++ RF +++A P+ TP +      +AQ+P+ PA+I AM   PYR   G      L  R D
Sbjct: 1054 PPDANIVSCRWVFHAKKDASGNVYRYRARLVARGFSQVPGVDFFDTYAPVAKTASIRVSLAFAARHNFEVHQLDVKSAYLNGEFEDNEVIWMAVPPGSNLTTDKTLALRLLRPLYGLKQSARHWHKKLLRVLQEKLRMAQSDVD--------QAVFFRVEGTE--LIVIVVHVDDLTVVTSSDALVAEVKAKLREAFEISDEGEIHWILGFAVERDRDNRRLSLSQTAYIESIVRRFGLEDAKPVSTPMDPHVALSSAQSPSTPADIGAMRDVPYREAVGSLMYASLGTRPD 1335          
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A4Q3DG62_9RICK (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A4Q3DG62_9RICK)

HSP 1 Score: 139 bits (350), Expect = 3.310e-33
Identity = 102/293 (34.81%), Postives = 154/293 (52.56%), Query Frame = 1
Query:   10 SPPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIA--GLEGCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVSAITHRLQGVKLETLIK--------------QDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERSR-TDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
            +P   R IGC+W++  K+ A G V  +KARL A+GF+QR G+D D T + V    ++R+LLA+AA + +EI Q+DV TA+LN  LEEE+YM+ P G    G E  +  KLLK++YGLKQA+  W+  R   +I+  GF  N ++ CV   +++             + +  +VDD+LL  G  +  ++   + +  +  +K              +D  N  + LSQ  YID++L RF MQ A  +L P    +     Q P  P E+  M+  PY    G     +LC R D
Sbjct:  170 APEQIRPIGCKWIYKRKKGADGQVETFKARLVAKGFTQREGIDYDETFSPVAMFKSIRILLAIAAHYDYEIWQMDVKTAFLNGYLEEEIYMAQPDGFIEKGQEHKV-CKLLKSIYGLKQASRSWNQ-RFDEVIKTYGFEQNLSEPCVYKYSKKVV-----------VFLVLYVDDILLI-GSDIKVMSDIKEWLAKQFQMKDLGNAAFVLGIQIIRDRKNKLLALSQGTYIDKVLSRFSMQNAHGVLLPIRSGKFLSKEQCPKTPQEVEDMSRVPYASAVGSLMYAMLCTRPD 448          
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A4V1T1E6_9SPHI (Uncharacterized protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T1E6_9SPHI)

HSP 1 Score: 138 bits (348), Expect = 1.140e-32
Identity = 100/290 (34.48%), Postives = 143/290 (49.31%), Query Frame = 1
Query:   13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEG-CLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTG-----YPVSAITHRLQGVK--------LETLIKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERS-RTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
            P   + IGC+WVF  K  + G + R+KARL A+GF+QR G+D   T + V   D++R ++AL A F FE+HQ+DV TA+LN  LEEE+YM  P G +   G  L  KL K++YGLKQA+  W+L    + I   GF  N  D C+              G   C  +  +VDD+LL T      Y V     +   +K        +   I ++   G + LSQ+ YI+++L RF M++  P + P  +  +    Q P    E   M   PY    G      +C R D
Sbjct:  836 PDGVKAIGCKWVFKTKNDSQGNIERHKARLVAKGFTQREGIDYTDTFSPVSKKDSLRTIMALVAHFDFELHQMDVKTAFLNGDLEEEVYMKQPEGFSSSHGEHLVCKLNKSIYGLKQASRQWYLKFHDV-ITSFGFEENVMDQCI---------YQKVSGSKICFLV-LYVDDILLATNDNGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFRMKDCSPSIAPVVKGDKFSLDQCPKNDLERDQMKNIPYASAVGSLMYAQVCTRPD 1114          
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A1M2VCS6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VCS6_TRAPU)

HSP 1 Score: 137 bits (345), Expect = 2.970e-32
Identity = 104/286 (36.36%), Postives = 143/286 (50.00%), Query Frame = 1
Query:   13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEGCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVSAI---THRLQGVKLETLIKQDLVNGT--------VHLSQQHYIDELLGRFLMQEAWPLLTPAERSRTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
            P  +  IGCRWV+ LKR + G ++RYKARL AQGFSQ PG+D   T A V+  D++R L A+AAE G  + Q DVV AYLNA L EE+YM  P G     G + L+L KALYGLKQ    W+     +L+EE  F   D+D CV     +R            + +G HVDD++     P  +    T   +  K+  L +  L+ G         + L Q  +I   L R+ M+   P+ TP + +     + P   A++S M   PY+   G      L  R D
Sbjct:  876 PSGRSPIGCRWVYRLKRDSEGRIIRYKARLVAQGFSQVPGLDYFETFAPVVRMDSLRTLAAIAAERGMGLRQYDVVGAYLNADLNEEIYMRQPPGYDDGSGKV-LRLQKALYGLKQGGRKWNQHLNRVLVEELKFTRLDSDACVYVKTSKR----------GLILVGVHVDDMISAADTPELSAELETGLRKHFKITDLGEPQLLLGLEVSRSGRLITLRQTQFILSALKRYGMENCAPVSTPMDPN-VRLLKEPE-DADLSEMKDVPYQAAIGTLMYAALGTRPD 1148          
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A401H4R8_9APHY (Uncharacterized protein n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H4R8_9APHY)

HSP 1 Score: 137 bits (344), Expect = 4.130e-32
Identity = 109/293 (37.20%), Postives = 147/293 (50.17%), Query Frame = 1
Query:   10 SPPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEE--LYMSAPLGI-AGLEGCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGY-----PVSAITHRLQGVK--------LETLIKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERSRT-DAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
            +P    ++ CRWVFA K+ A G V RY+ARL A+GFSQ PGVD   T A V    ++R+ LA AA   FE+HQ+DV +AYL+   EE   +YMS P G     E  + L+LL+ LYGL+Q+A  WH   + LL   Q F        V C   Q       G D   + I  HVDDL + T        V A   +  G+         L   +++D    T+ LSQ  YI+ ++ RF  ++  PL TP + + T  +AQ+P   AE +AM   PYR   G      L  R D
Sbjct: 1071 APTGANVVSCRWVFAAKKDAAGNVYRYRARLVARGFSQIPGVDFFDTYAPVAKTASIRVALAFAARHDFEVHQIDVKSAYLHGEFEENEVIYMSLPPGTNLTKEPGMVLRLLRPLYGLRQSARHWH---KKLLRALQEFLRM-----VQCDVDQAVFFRIEGTD--LIVIVVHVDDLTIVTSSRALIDEVKAQLRKAFGISDLGEIHWILGFAVERDRTARTLALSQTSYINSIIQRFGFEDLKPLTTPMDPNTTLSSAQSPQTTAEAAAMRDIPYREAVGSLMYASLGTRPD 1353          
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: H3H1B2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1B2_PHYRM)

HSP 1 Score: 134 bits (336), Expect = 6.370e-32
Identity = 84/251 (33.47%), Postives = 142/251 (56.57%), Query Frame = 1
Query:   13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEG----CLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPV------SAITHRLQGVKLETL-------IKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAE 714
            P  ++ IGCRWVF +K    G + R+KARL A+GFSQ+ G+D D T A V    ++R++L+LAA++G ++HQ+DV TA+LN VL+E++YM+ P G    +     C   KL ++LYGLKQ+  +W+      +++  GF+  ++D C+         +   G D   + +  +VDDL+L +           A++HR +   +  L       I+QD+V G + + Q  +  ++L +F M ++ P+ TP +
Sbjct:   62 PKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVC---KLKRSLYGLKQSPRMWNQTIDDFMLK-LGFKKCESDHCIY--------LKRDGHD--MIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQD 298          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4S4L1T1_9AGAM6.330e-3636.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3LA50_TRIPR1.230e-3536.30Putative retrotransposon Ty1-copia subclass protei... [more]
A0A438JHV4_VITVI6.850e-3535.99Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2V3W8_TRAPU3.650e-3439.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A060SJQ5_PYCCI1.930e-3336.30Uncharacterized protein (Fragment) n=1 Tax=Pycnopo... [more]
A0A4Q3DG62_9RICK3.310e-3334.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4V1T1E6_9SPHI1.140e-3234.48Uncharacterized protein (Fragment) n=1 Tax=Sphingo... [more]
A0A1M2VCS6_TRAPU2.970e-3236.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H4R8_9APHY4.130e-3237.20Uncharacterized protein n=2 Tax=Sparassis crispa T... [more]
H3H1B2_PHYRM6.370e-3233.47Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig663contigP-wetherbeei_contig663:5224..6246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4558.Sb0010s005460.1
PFAMsRVT_2
Model size973
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.52e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YYP@33090|Viridiplantae,3GQD7@35493|Streptophyta,3M3FD@4447|Liliopsida,3IKKZ@38820|Poales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size756
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.5126317-UTR-P-wetherbeei_contig663:5223..53851683186926.5126317-UTR-P-wetherbeei_contig663:5223..5385Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig663 5224..5385 +
1683186926.541634-UTR-P-wetherbeei_contig663:6191..62461683186926.541634-UTR-P-wetherbeei_contig663:6191..6246Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig663 6192..6246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.5235465-CDS-P-wetherbeei_contig663:5385..58211683186926.5235465-CDS-P-wetherbeei_contig663:5385..5821Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig663 5386..5821 +
1683186926.5322518-CDS-P-wetherbeei_contig663:5871..61911683186926.5322518-CDS-P-wetherbeei_contig663:5871..6191Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig663 5872..6191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig663.3.1prot_P-wetherbeei_contig663.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig663 5386..6191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig663.3.1

>prot_P-wetherbeei_contig663.3.1 ID=prot_P-wetherbeei_contig663.3.1|Name=mRNA_P-wetherbeei_contig663.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp
MTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLE
GCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQ
RTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVSAITHRLQGVKLETLIKQD
LVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERSRTDAAQAPAMPAEI
SAMATTPYRPGAGRDHAVVLCRRHDAPGDSQRRPCPDTFLQLPRASALAR
R*
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mRNA from alignment at P-wetherbeei_contig663:5224..6246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig663.3.1 ID=mRNA_P-wetherbeei_contig663.3.1|Name=mRNA_P-wetherbeei_contig663.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1023bp|location=Sequence derived from alignment at P-wetherbeei_contig663:5224..6246+ (Phaeothamnion wetherbeei SAG_119_79)
AAATGCACGTCCCCGCCGCCGAAGCGTTTGATCGGCTGCCGCTGGGTCTT TGCACTCAAGCGAGCGGCCATCGGCGCCGTATTGCGGTACAAGGCGCGCT TGGCTGCCCAGGGGTTTTCCCAGCGCCCTGGCGTCGATTGCGACGTTACA TGCGCTTCTGTCATGACGGCGGACACCATGCGTTTACTTCTGGCGTTAGC AGCGGAGTTTGGCTTCGAGATCCATCAGCTCGATGTCGTGACGGCCTATC TGAACGCGGTTTTGGAAGAGGAGCTCTATATGTCTGCGCCACTCGGCATT GCTGGGCTTGAGGGCTGCCTGGGACTGAAACTGCTGAAAGCCCTCTACGG GCTTAAGCAGGCGGCCTATTTATGGCATCTCTGTCGTCAGACGTTGCTCA TCGAGGAGCAGGGCTTCCGCCCGAATGATGCTGACTGCTGCGTTTCGTGC GTGGCACGGCAACGCACACCGGTGGCGGCTGCTGGCGGCGACGGCAGCTG CCTTGCCATCGGCACCCACGTCGATGATCTGCTGCTCACCACGGGTTACC CGGTGTCTGCCATCACGCACCGACTTCAAGGCGTCAAGCTCGAAACGCGT TCAGATGAAAGACCTCGGCCAAGTGCACCACCTCCTCGGGCGGCCTAGTG ATCAAGCAGGACCTCGTCAACGGCACGGTGCATCTCTCGCAGCAGCATTA CATCGATGAACTGCTGGGTCGCTTCCTAATGCAGGAGGCATGGCCGCTCC TGACACCGGCGGAGCGTAGTCGTACTGACGCTGCCCAAGCACCTGCGATG CCGGCCGAAATTTCTGCCATGGCCACTACACCGTACCGCCCGGGAGCTGG TCGGGACCACGCTGTCGTTCTATGTCGCCGTCATGACGCGCCCGGAGATT CGCAACGCCGTCCGTGCCCTGACACGTTTCTGCAACTACCCCGGGCCTCG GCATTGGCGCGCCGCTGAGCACCTCCTGAAGTACCTGAAAGGGACGAGGG GGAAGGGCCTGCTGTACCGCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig663:5224..6246+

>mRNA_P-wetherbeei_contig663.3.1 ID=mRNA_P-wetherbeei_contig663.3.1|Name=mRNA_P-wetherbeei_contig663.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig663:5224..6246+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCGGACACCATGCGTTTACTTCTGGCGTTAGCAGCGGAGTTTGG
CTTCGAGATCCATCAGCTCGATGTCGTGACGGCCTATCTGAACGCGGTTT
TGGAAGAGGAGCTCTATATGTCTGCGCCACTCGGCATTGCTGGGCTTGAG
GGCTGCCTGGGACTGAAACTGCTGAAAGCCCTCTACGGGCTTAAGCAGGC
GGCCTATTTATGGCATCTCTGTCGTCAGACGTTGCTCATCGAGGAGCAGG
GCTTCCGCCCGAATGATGCTGACTGCTGCGTTTCGTGCGTGGCACGGCAA
CGCACACCGGTGGCGGCTGCTGGCGGCGACGGCAGCTGCCTTGCCATCGG
CACCCACGTCGATGATCTGCTGCTCACCACGGGTTACCCGGTGTCTGCCA
TCACGCACCGACTTCAAGGCGTCAAGCTCGAAACGCTGATCAAGCAGGAC
CTCGTCAACGGCACGGTGCATCTCTCGCAGCAGCATTACATCGATGAACT
GCTGGGTCGCTTCCTAATGCAGGAGGCATGGCCGCTCCTGACACCGGCGG
AGCGTAGTCGTACTGACGCTGCCCAAGCACCTGCGATGCCGGCCGAAATT
TCTGCCATGGCCACTACACCGTACCGCCCGGGAGCTGGTCGGGACCACGC
TGTCGTTCTATGTCGCCGTCATGACGCGCCCGGAGATTCGCAACGCCGTC
CGTGCCCTGACACGTTTCTGCAACTACCCCGGGCCTCGGCATTGGCGCGC
CGCTGA
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