mRNA_P-wetherbeei_contig663.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A4S4L1T1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L1T1_9AGAM) HSP 1 Score: 146 bits (368), Expect = 6.330e-36 Identity = 107/293 (36.52%), Postives = 146/293 (49.83%), Query Frame = 1
Query: 13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIA--GLEGCLGLKLLKALYGLKQAAYLWH--LCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVS------AITHRLQGVKLETL-------IKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAE-RSRTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
P ++G +WVF +KR A G + +YKARL AQGF+Q PG+D A V ++R+LLALAA F +EIHQ+DV A+LN LEEE+YM P G A GLE + +L+K +YGLKQ++ W+ LC E GF+ C G+ I VDD L V+ A+ H + L + IK+D T+ LSQ+ YID +L RF ++ A PL T + SR +Q P+MP + M PY+ G L R D
Sbjct: 101 PTAANVVGSKWVFKIKRGAAGEITKYKARLVAQGFTQVPGIDYGDMFAPVAKLTSIRVLLALAARFDWEIHQMDVKNAFLNGDLEEEIYMKQPPGYAAPGLEDKV-CRLIKTIYGLKQSSQRWYKKLCDAFF---EMGFKV--------CSVEHGIFTKHDETKGTISIIAASVDDFALLANSLVAIDEMKDALNHAFEMTDLGEIHWLLGIEIKRDRGARTISLSQRAYIDTILSRFNLENANPLSTATDPNSRLSISQCPSMPHQFEEMRNVPYQEAIGSVMYAALAARPD 381
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR) HSP 1 Score: 147 bits (370), Expect = 1.230e-35 Identity = 106/292 (36.30%), Postives = 147/292 (50.34%), Query Frame = 1
Query: 7 TSPPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEG-CLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTG-----YPVSAITHRLQGVK--------LETLIKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERS-RTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
T P + IGC+WVF KR + G + RYKARL A+GF+QR G+D T + V D+ R+++AL A F FE+HQ+DV TA+LN LEEE+YM P G EG L KL +++YGLKQA+ W+L + +I GF N D C+ G C + +VDD+LL T Y V R +K + I +D G + LSQ+ YI+++L RF M+ P + P + R + +Q P E M PY G +C R D
Sbjct: 469 TLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYL-KFHEVITSFGFEENVMDQCI---------YQKVSGSHICFLV-LYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCSPSVAPIVKGDRFELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPD 749
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A438JHV4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JHV4_VITVI) HSP 1 Score: 145 bits (365), Expect = 6.850e-35 Identity = 104/289 (35.99%), Postives = 149/289 (51.56%), Query Frame = 1
Query: 31 IGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIA--GLEGCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVSAI-------TH----------RLQGVKLETLIKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERS-RTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
+GC+WVF KR + G + RYKARL +G+SQR G+D T + V T D+ R+++A+ A F E+HQ+DV TA+LN VL+EE+YM P+G G E L KL K++YGLKQA+ W+L + +I + GF+ N D C+ + +G S + + +VDD+LL + P I TH + G+K I +D NG + LSQ+ YI+ +L RF M P + + AQ P E M T PY G +C R D
Sbjct: 961 VGCKWVFKTKRDSSGKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGVLDEEVYMEQPIGFVEVGKED-LVCKLNKSIYGLKQASRQWYL-KFDKIITQNGFKENTVDRCIY--------LRVSGS--SYIFLVLYVDDILLASNDPDLLIETKHILSTHFDMKDLGEASYVLGIK----ILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKGDKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPD 1233
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 142 bits (359), Expect = 3.650e-34 Identity = 98/248 (39.52%), Postives = 134/248 (54.03%), Query Frame = 1
Query: 13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEGCLGL-KLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVSAITHR---LQGVKLETL----------IKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAE 714
P ++ IGCRWV+ LKR + G ++RYKARL AQGFSQ PG+D T A V+ D++RLLLA+AAE E+ Q DVV AYLNA L+EE+YM P G EG + +L KALYGLKQA W+ +L + GF+ ++D CV +++P +G HVDD+ P T R + K+ L I +D T+ + Q YI +L RF M + P+ TP +
Sbjct: 53 PAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYE--EGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSD---PCVYLKKSPKGLT-------IVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLD 288
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A060SJQ5_PYCCI (Uncharacterized protein (Fragment) n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SJQ5_PYCCI) HSP 1 Score: 140 bits (354), Expect = 1.930e-33 Identity = 106/292 (36.30%), Postives = 149/292 (51.03%), Query Frame = 1
Query: 13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLE--EELYMSAPLGI-AGLEGCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYP--VSAITHRLQGVK-----------LETLIKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAE-RSRTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
PP ++ CRWVF K+ A G V RY+ARL A+GFSQ PGVD T A V ++R+ LA AA FE+HQLDV +AYLN E E ++M+ P G + L L+LL+ LYGLKQ+A WH +L E+ +D D Q G + + I HVDDL + T V+ + +L+ L +++D N + LSQ YI+ ++ RF +++A P+ TP + +AQ+P+ PA+I AM PYR G L R D
Sbjct: 1054 PPDANIVSCRWVFHAKKDASGNVYRYRARLVARGFSQVPGVDFFDTYAPVAKTASIRVSLAFAARHNFEVHQLDVKSAYLNGEFEDNEVIWMAVPPGSNLTTDKTLALRLLRPLYGLKQSARHWHKKLLRVLQEKLRMAQSDVD--------QAVFFRVEGTE--LIVIVVHVDDLTVVTSSDALVAEVKAKLREAFEISDEGEIHWILGFAVERDRDNRRLSLSQTAYIESIVRRFGLEDAKPVSTPMDPHVALSSAQSPSTPADIGAMRDVPYREAVGSLMYASLGTRPD 1335
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A4Q3DG62_9RICK (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A4Q3DG62_9RICK) HSP 1 Score: 139 bits (350), Expect = 3.310e-33 Identity = 102/293 (34.81%), Postives = 154/293 (52.56%), Query Frame = 1
Query: 10 SPPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIA--GLEGCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVSAITHRLQGVKLETLIK--------------QDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERSR-TDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
+P R IGC+W++ K+ A G V +KARL A+GF+QR G+D D T + V ++R+LLA+AA + +EI Q+DV TA+LN LEEE+YM+ P G G E + KLLK++YGLKQA+ W+ R +I+ GF N ++ CV +++ + + +VDD+LL G + ++ + + + +K +D N + LSQ YID++L RF MQ A +L P + Q P P E+ M+ PY G +LC R D
Sbjct: 170 APEQIRPIGCKWIYKRKKGADGQVETFKARLVAKGFTQREGIDYDETFSPVAMFKSIRILLAIAAHYDYEIWQMDVKTAFLNGYLEEEIYMAQPDGFIEKGQEHKV-CKLLKSIYGLKQASRSWNQ-RFDEVIKTYGFEQNLSEPCVYKYSKKVV-----------VFLVLYVDDILLI-GSDIKVMSDIKEWLAKQFQMKDLGNAAFVLGIQIIRDRKNKLLALSQGTYIDKVLSRFSMQNAHGVLLPIRSGKFLSKEQCPKTPQEVEDMSRVPYASAVGSLMYAMLCTRPD 448
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A4V1T1E6_9SPHI (Uncharacterized protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T1E6_9SPHI) HSP 1 Score: 138 bits (348), Expect = 1.140e-32 Identity = 100/290 (34.48%), Postives = 143/290 (49.31%), Query Frame = 1
Query: 13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEG-CLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTG-----YPVSAITHRLQGVK--------LETLIKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERS-RTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
P + IGC+WVF K + G + R+KARL A+GF+QR G+D T + V D++R ++AL A F FE+HQ+DV TA+LN LEEE+YM P G + G L KL K++YGLKQA+ W+L + I GF N D C+ G C + +VDD+LL T Y V + +K + I ++ G + LSQ+ YI+++L RF M++ P + P + + Q P E M PY G +C R D
Sbjct: 836 PDGVKAIGCKWVFKTKNDSQGNIERHKARLVAKGFTQREGIDYTDTFSPVSKKDSLRTIMALVAHFDFELHQMDVKTAFLNGDLEEEVYMKQPEGFSSSHGEHLVCKLNKSIYGLKQASRQWYLKFHDV-ITSFGFEENVMDQCI---------YQKVSGSKICFLV-LYVDDILLATNDNGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFRMKDCSPSIAPVVKGDKFSLDQCPKNDLERDQMKNIPYASAVGSLMYAQVCTRPD 1114
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A1M2VCS6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VCS6_TRAPU) HSP 1 Score: 137 bits (345), Expect = 2.970e-32 Identity = 104/286 (36.36%), Postives = 143/286 (50.00%), Query Frame = 1
Query: 13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEGCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPVSAI---THRLQGVKLETLIKQDLVNGT--------VHLSQQHYIDELLGRFLMQEAWPLLTPAERSRTDAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
P + IGCRWV+ LKR + G ++RYKARL AQGFSQ PG+D T A V+ D++R L A+AAE G + Q DVV AYLNA L EE+YM P G G + L+L KALYGLKQ W+ +L+EE F D+D CV +R + +G HVDD++ P + T + K+ L + L+ G + L Q +I L R+ M+ P+ TP + + + P A++S M PY+ G L R D
Sbjct: 876 PSGRSPIGCRWVYRLKRDSEGRIIRYKARLVAQGFSQVPGLDYFETFAPVVRMDSLRTLAAIAAERGMGLRQYDVVGAYLNADLNEEIYMRQPPGYDDGSGKV-LRLQKALYGLKQGGRKWNQHLNRVLVEELKFTRLDSDACVYVKTSKR----------GLILVGVHVDDMISAADTPELSAELETGLRKHFKITDLGEPQLLLGLEVSRSGRLITLRQTQFILSALKRYGMENCAPVSTPMDPN-VRLLKEPE-DADLSEMKDVPYQAAIGTLMYAALGTRPD 1148
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: A0A401H4R8_9APHY (Uncharacterized protein n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H4R8_9APHY) HSP 1 Score: 137 bits (344), Expect = 4.130e-32 Identity = 109/293 (37.20%), Postives = 147/293 (50.17%), Query Frame = 1
Query: 10 SPPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEE--LYMSAPLGI-AGLEGCLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGY-----PVSAITHRLQGVK--------LETLIKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAERSRT-DAAQAPAMPAEISAMATTPYRPGAGRDHAVVLCRRHD 837
+P ++ CRWVFA K+ A G V RY+ARL A+GFSQ PGVD T A V ++R+ LA AA FE+HQ+DV +AYL+ EE +YMS P G E + L+LL+ LYGL+Q+A WH + LL Q F V C Q G D + I HVDDL + T V A + G+ L +++D T+ LSQ YI+ ++ RF ++ PL TP + + T +AQ+P AE +AM PYR G L R D
Sbjct: 1071 APTGANVVSCRWVFAAKKDAAGNVYRYRARLVARGFSQIPGVDFFDTYAPVAKTASIRVALAFAARHDFEVHQIDVKSAYLHGEFEENEVIYMSLPPGTNLTKEPGMVLRLLRPLYGLRQSARHWH---KKLLRALQEFLRM-----VQCDVDQAVFFRIEGTD--LIVIVVHVDDLTIVTSSRALIDEVKAQLRKAFGISDLGEIHWILGFAVERDRTARTLALSQTSYINSIIQRFGFEDLKPLTTPMDPNTTLSSAQSPQTTAEAAAMRDIPYREAVGSLMYASLGTRPD 1353
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Match: H3H1B2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1B2_PHYRM) HSP 1 Score: 134 bits (336), Expect = 6.370e-32 Identity = 84/251 (33.47%), Postives = 142/251 (56.57%), Query Frame = 1
Query: 13 PPPKRLIGCRWVFALKRAAIGAVLRYKARLAAQGFSQRPGVDCDVTCASVMTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEG----CLGLKLLKALYGLKQAAYLWHLCRQTLLIEEQGFRPNDADCCVSCVARQRTPVAAAGGDGSCLAIGTHVDDLLLTTGYPV------SAITHRLQGVKLETL-------IKQDLVNGTVHLSQQHYIDELLGRFLMQEAWPLLTPAE 714
P ++ IGCRWVF +K G + R+KARL A+GFSQ+ G+D D T A V ++R++L+LAA++G ++HQ+DV TA+LN VL+E++YM+ P G + C KL ++LYGLKQ+ +W+ +++ GF+ ++D C+ + G D + + +VDDL+L + A++HR + + L I+QD+V G + + Q + ++L +F M ++ P+ TP +
Sbjct: 62 PKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVC---KLKRSLYGLKQSPRMWNQTIDDFMLK-LGFKKCESDHCIY--------LKRDGHD--MIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQD 298 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig663.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig663.3.1 >prot_P-wetherbeei_contig663.3.1 ID=prot_P-wetherbeei_contig663.3.1|Name=mRNA_P-wetherbeei_contig663.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp MTADTMRLLLALAAEFGFEIHQLDVVTAYLNAVLEEELYMSAPLGIAGLEback to top mRNA from alignment at P-wetherbeei_contig663:5224..6246+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig663.3.1 ID=mRNA_P-wetherbeei_contig663.3.1|Name=mRNA_P-wetherbeei_contig663.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1023bp|location=Sequence derived from alignment at P-wetherbeei_contig663:5224..6246+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig663:5224..6246+ >mRNA_P-wetherbeei_contig663.3.1 ID=mRNA_P-wetherbeei_contig663.3.1|Name=mRNA_P-wetherbeei_contig663.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig663:5224..6246+ (Phaeothamnion wetherbeei SAG_119_79)back to top |