mRNA_P-wetherbeei_contig6629.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6629.1.1
Unique NamemRNA_P-wetherbeei_contig6629.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6629.1.1 vs. uniprot
Match: A0A5J5BPR8_9ASTE (MSP domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BPR8_9ASTE)

HSP 1 Score: 48.1 bits (113), Expect = 8.870e-5
Identity = 21/46 (45.65%), Postives = 27/46 (58.70%), Query Frame = 1 
Query:   13 IKGHKDVVRFLMGRGCDTEACDSNSWTPLTCGAVGGHAAVIRQLLT 150
            I+GH DV+RFL+  G D +  D N WTPL C +  G    +  LLT
Sbjct:  266 IRGHVDVLRFLVSMGGDPDVADCNGWTPLHCASAEGQGEAVEFLLT 311
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6629.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5J5BPR8_9ASTE8.870e-545.65MSP domain-containing protein n=1 Tax=Nyssa sinens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6629contigP-wetherbeei_contig6629:224..415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3055.EDO99490
Preferred namePIDD1
PFAMsDeath,LRR_8,Peptidase_S68,ZU5
Model size192
Max annot lvl2759|Eukaryota
KEGG koko:K10130
KEGG Pathwayko04064,ko04115,ko04210,map04064,map04115,map04210
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0003674,GO:0005102,GO:0005123,GO:0005126,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005829,GO:0006355,GO:0006919,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0009889,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010564,GO:0010604,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010948,GO:0010950,GO:0010952,GO:0012505,GO:0019219,GO:0019222,GO:0022402,GO:0023051,GO:0023052,GO:0023056,GO:0030162,GO:0030330,GO:0031323,GO:0031325,GO:0031326,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032813,GO:0033554,GO:0035556,GO:0042770,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045786,GO:0045787,GO:0045862,GO:0045930,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051336,GO:0051345,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0065007,GO:0065009,GO:0070013,GO:0071156,GO:0071158,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902041,GO:1902043,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903506,GO:2000045,GO:2000112,GO:2000116,GO:2000134,GO:2001056,GO:2001141,GO:2001233,GO:2001235,GO:2001236,GO:2001238
Exons1
Evalue0.000134
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size192
COG categoryI
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.4226642-CDS-P-wetherbeei_contig6629:223..4151683186926.4226642-CDS-P-wetherbeei_contig6629:223..415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6629 224..415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6629.1.1prot_P-wetherbeei_contig6629.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6629 224..415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6629.1.1

>prot_P-wetherbeei_contig6629.1.1 ID=prot_P-wetherbeei_contig6629.1.1|Name=mRNA_P-wetherbeei_contig6629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
LLVRIKGHKDVVRFLMGRGCDTEACDSNSWTPLTCGAVGGHAAVIRQLLT
GRCAGGLAMLLECR
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mRNA from alignment at P-wetherbeei_contig6629:224..415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6629.1.1 ID=mRNA_P-wetherbeei_contig6629.1.1|Name=mRNA_P-wetherbeei_contig6629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig6629:224..415- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTCGTACGAATAAAAGGCCACAAGGACGTCGTCCGATTCCTCATGGG
CCGCGGCTGCGACACGGAGGCGTGCGATTCCAATTCGTGGACGCCACTCA
CCTGTGGGGCCGTCGGCGGCCACGCCGCCGTTATCAGACAGCTTCTGACC
GGCAGATGTGCGGGCGGGCTGGCGATGCTACTGGAATGTCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6629:224..415-

>mRNA_P-wetherbeei_contig6629.1.1 ID=mRNA_P-wetherbeei_contig6629.1.1|Name=mRNA_P-wetherbeei_contig6629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig6629:224..415- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTCGTACGAATAAAAGGCCACAAGGACGTCGTCCGATTCCTCATGGG
CCGCGGCTGCGACACGGAGGCGTGCGATTCCAATTCGTGGACGCCACTCA
CCTGTGGGGCCGTCGGCGGCCACGCCGCCGTTATCAGACAGCTTCTGACC
GGCAGATGTGCGGGCGGGCTGGCGATGCTACTGGAATGTCGG
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