mRNA_P-wetherbeei_contig6626.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6626.2.1
Unique NamemRNA_P-wetherbeei_contig6626.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 177 bits (448), Expect = 7.220e-45
Identity = 97/246 (39.43%), Postives = 138/246 (56.10%), Query Frame = 1
Query:   43 PFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRWAYMIALKSDAVKALALFVDEVKALGFG------VRRLRSDNGGEFVGRAFTQACIDNGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQCAVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRPAGGKFTQRAVMGVMVGYCPNGAG---WRIYVPAAGKVVTSGHVRFDEAVFPSTR 753
            P ELV+ D+ G +      G  Y   FT  +T +R  Y +  KS+++  L  ++ ++  + F       +R LRSDNGGE+ G  F   C ++GI+Q+F  PY P+  G AE+ W V+    R+L   + + KRFW EA   A +++NR  T AL PG+TPY  + G+  S   FR FG  A+VH    +R   GKF  RAV G+M+GY   G     +RIY+P+ GK + SGHV FDE  FP+ R
Sbjct:   81 PLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN-ISFRDHKVNTLRGLRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEALNTAAYILNRSRTSALGPGETPYYKMFGKHTSVKHFRTFGCKAFVHDTSVRR---GKFDDRAVEGIMIGYDDIGNNPKCYRIYIPSIGKYIKSGHVTFDEETFPAKR 322          
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Match: A0A8J5C4K2_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C4K2_ZINOF)

HSP 1 Score: 148 bits (373), Expect = 5.030e-34
Identity = 86/245 (35.10%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    1 RLPTPKTTRRVETAPFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRWAYMIALKSDAVKALALFVDEVK-ALGFGVRRLRSDNGGEFVGRAFTQACIDNGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQCAVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRPAGGKFTQRAVMGVMVGYCPNGAGWRIYVPAAGKVVTSGHVRFDE 732
            + P PKT  R  + P ELV+ D+ G IR      + Y  LF   FT   W Y +  KSDA      F   V+   G  ++ LR+D GGEF+ + F + C +NGI Q+F   +TP+  G AER    I    R++L    +  +FW EA    V+++NR  TKA+   +TP++A + R P     + FG  AY  +LP  R    KF ++    + +GY     G+R+Y P   ++V S  V FDE
Sbjct:  431 QFPFPKTAWRARS-PLELVHADICGPIRSASLGNKQYFILFVDDFTRMIWTYFLDRKSDAFSTFLHFKALVENQSGCLIKALRTDCGGEFIYKPFLKYCKENGILQQFTVRHTPQQNGVAERKNRTIEEMARSMLKGKGLPNKFWAEAVNTTVYILNRSPTKAVQ-NRTPFEAWYDRKPVVNQLKVFGCVAYARMLPQNRE---KFDEKGEKFIFIGYSDESKGYRLYNPKTNQLVLSRDVIFDE 670          
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Match: A0A6A6LWD2_HEVBR (Integrase catalytic domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LWD2_HEVBR)

HSP 1 Score: 138 bits (347), Expect = 1.920e-32
Identity = 91/280 (32.50%), Postives = 131/280 (46.79%), Query Frame = 1
Query:    1 RLPTPKTTRRVETAPFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRWAYMIALKSDAV---KALALFVDEVKALGFGVRRLRSDNGGEFVGRAFTQACIDNGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQCAVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRPAGGKFTQRAVMGVMVGYCPNGAGWRIYVPAAGKVVTSGHVRFDEAVFPSTRLTGTRTDAGEDDVFPWPEENDAATVE 831
            R P PK +    T    LV+ D+ G I P     + Y+  F   F+   W Y +  K++A    K   + V+  K +GF ++ LR+D GGEF    FT  C   G+K++    YTP+  G AER    +    RA+L    + K FW EA Q   H++NR  T A+   +TP +A  G  PS   FR FG   +VH+   +R    K   ++   V  G+     G+R+Y P A K+V S  V F+E      R     TD+ E  +      ND +T E
Sbjct:   73 RNPIPKRSNWRATEQLGLVHADICGPITPASNSHKRYLLCFIDDFSRKAWCYFLVEKTEAFYHFKCFKVLVE--KEIGFPIKCLRTDRGGEFNSTEFTDFCKQQGVKRQLTMAYTPQQNGVAERKNQTVMNLVRAILTEKQIPKVFWPEAVQWTFHILNRSPTLAVK-DKTPEEAWSGEKPSVDYFRVFGCVGHVHIPDAKRT---KLEVKSTSCVFFGFSQESKGYRMYDPIAKKIVYSRDVVFEE-----NRAWDWSTDSQEKQLLELEWGNDISTTE 341          
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Match: A0A182GYI1_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GYI1_AEDAL)

HSP 1 Score: 141 bits (355), Expect = 5.260e-32
Identity = 85/247 (34.41%), Postives = 123/247 (49.80%), Query Frame = 1
Query:    1 RLPTPKTTRRVETAPFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRWAYMIALKSDAVKALALFVDEVKA-LGFGVRRLRSDNGGEFVGRAFTQACIDNGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQCAVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRPAGGKFTQRAVMGVMVGYCPNGAGWRIYVPAAGKVVTSGHVRFDEAV 738
            R P  +   R  +   ELV+ D+ G + P G  G+ Y   F   +T +   +++  K +       +  E+ A  G  + RLR+DNGGE+VG+     C D GIK E+  PYTPE  G AER    +    R++L  S+V++ FW EA Q A  L NR    AL    TP++    R P  +  R FG+ AY H+   +R    K  ++   GV +GY  NG  +RI+ P   ++VT   V  DE V
Sbjct:  365 RNPFSQREERRSSRVLELVHSDVCGPVTPTGWDGDKYFATFIDDWTRFTVVFLLRSKDEVAGCFKQYEAEMTAKFGVKISRLRTDNGGEYVGKELRSFCKDKGIKMEYTVPYTPEQNGVAERMNRTLEEKARSMLFDSDVDRSFWGEAVQTAAFLTNRSPATALGEKITPFEMWEKRKPDVSKLRVFGSLAYCHIPKERRR---KLDEKTWKGVFIGYGING--YRIWDPRRQRIVTVRDVVIDEGV 606          
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 142 bits (357), Expect = 6.240e-32
Identity = 84/242 (34.71%), Postives = 127/242 (52.48%), Query Frame = 1
Query:   13 PKTTRRVETAPFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRWAYMIALKSDAVKALALF-VDEVKALGFGVRRLRSDNGGEFVGRAFTQACIDNGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQCAVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRPAGGKFTQRAVMGVMVGYCPNGAGWRIYVPAAGKVVTSGHVRFDEA 735
            PK +    +   +LV+ D+ G I P    G+ YI  F   ++   W++++A KS+A++A   F V   + +G  +  LRSD GGE+   AF   C +NGIK++    YTP+  G AER    I    R ++   +V +RFW EA Q AVH++NR  + AL    TP +      PS    R FG  AY  L+P++R    K  ++++  V VG       +R+Y P   K++ S  VRFDE+
Sbjct:  488 PKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALG-DVTPDERWSNHKPSVEHVRVFGCVAYA-LVPYERRV--KLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDES 725          
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Match: A0A4Y2ESB7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2ESB7_ARAVE)

HSP 1 Score: 141 bits (356), Expect = 6.280e-32
Identity = 83/250 (33.20%), Postives = 131/250 (52.40%), Query Frame = 1
Query:    7 PTPKTTRRVETAPFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRWAYMIALKSDAVKALALFVDEVK-ALGFGVRRLRSDNGGEFVGRAFTQACIDNGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQCAVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRPAGGKFTQRAVMGVMVGYCPNGAGWRIYVPAAGKVVTSGHVRFDEAVFPSTR 753
            P PK  +   T P +LV+ DL G +      G++YI  F   ++ Y   Y+++ K + +  L  ++   +   G  ++ LRSDNGGE++G+       + GI  +   PY+P+  G +ER    +   TR LL+ +N+ +RFW EA   A +L NR  TK  P G+TPY+    R P+ +  R FG  AY ++   +R   GK   +AV G+ +GY     G+RIY+    K++ S  V+F E   P T+
Sbjct:  530 PYPKEAKYRATHPLDLVHSDLCGPMPTQSVSGKYYILTFVDDYSRYSMIYLLSKKDEVLSKLKEYIAMTRNKFGRTLKVLRSDNGGEYIGKEIEDFLKEQGIVHQLTVPYSPQQNGVSERKNRTLIEMTRCLLSEANLPQRFWAEAAMTATYLQNRLPTK--PKGKTPYELWTNRKPNLSHIRVFGCKAYAYIQKQKR---GKLDSKAVEGIFLGYDYRSKGYRIYL-GDNKIMISRTVKFIENPLPYTK 773          
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Match: A0A2U1MFK9_ARTAN (Zinc finger, CCHC-type n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MFK9_ARTAN)

HSP 1 Score: 139 bits (350), Expect = 5.930e-31
Identity = 82/241 (34.02%), Postives = 117/241 (48.55%), Query Frame = 1
Query:   13 PKTTRRVETAPFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRWAYMIALKSDAVKALALFVDEV-KALGFGVRRLRSDNGGEFVGRAFTQACIDNGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQCAVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRPAGGKFTQRAVMGVMVGYCPNGAGWRIYVPAAGKVVTSGHVRFDE 732
            PK  +   T P +L++ DL G I PP   G  YI +    F+ + W + +  K +A +    F   V K  G  +  LR+D GGEF  + FT  C + GI +    PYTP+  G  ER    + G TR++L A +V    W E  + A  L+NR  T+AL   QTPY+A  G+ P+    R FG  AY       RP   K   R+   + +G  P   G+R++ P A K+V      F+E
Sbjct:  526 PKAAKFKATHPLQLIHADLCGPISPPSIAGNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKSGKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTTPYTPQQNGVVERRNRTLMGMTRSILKARDVPNYMWAEGVRHATFLINRVSTRALV-NQTPYEAFKGKKPNLEGLRVFGCVAYA---TGTRPYLQKLDDRSTRLIYIGNEPGTKGFRLFNPRAKKIVVCRDAEFNE 762          
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Match: A0A8J5YEG9_9ROSI (Integrase catalytic domain-containing protein n=6 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YEG9_9ROSI)

HSP 1 Score: 139 bits (349), Expect = 6.410e-31
Identity = 87/274 (31.75%), Postives = 136/274 (49.64%), Query Frame = 1
Query:    1 RLPTPKTTRRVETAPFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRWAYMIALKSDAVKALALFVDEVK-ALGFGVRRLRSDNGGEFVGRAFTQACIDNGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQCAVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRPAGGKFTQRAVMGVMVGYCPNGAGWRIYVPAAGKVVTSGHVRFDEAVFPS-TRLTGTRTDAGEDDVFPWPEEND 816
            RLP P           ELV+ D+ G ++        Y  LF    T + W Y +  KS+ ++A + F   V+   G  ++ LR+DNG E++   F + C   GI  +    YTP+  G  ER    +   TR LL  S +  RFW EA   +V+L+N+  T+A+   +TP++A +G  PS +  + FG   Y  L+P +R    K  +R+  G+ VGY     G+R+Y P+  K++ S  +RFDE  F S      ++ D  + D+   P EN+
Sbjct:  499 RLPFPVNQAWRARERLELVHSDICGPMKSSSLNDSKYFVLFIDDLTRFCWVYFMKHKSEVLEAFSKFKALVENQTGCKIKALRTDNGAEYLSERFQKLCELAGIHHQLTTVYTPQQNGVCERKNRTVMNMTRCLLFQSKLPSRFWAEAVNTSVYLLNKLPTRAVK-DKTPFEAWYGLKPSVSHLKVFGCMCYA-LIPAERRT--KLERRSAPGIFVGYSSTKKGYRVYDPSTKKILVSRDIRFDEEKFWSWDESESSQFDEDQLDISLEPAENE 768          
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 138 bits (347), Expect = 1.160e-30
Identity = 85/241 (35.27%), Postives = 127/241 (52.70%), Query Frame = 1
Query:   13 PKTTRRVETAPFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRWAYMIALKSDAVKALALFVDEV-KALGFGVRRLRSDNGGEFVGRAFTQACIDNGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQCAVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRPAGGKFTQRAVMGVMVGYCPNGAGWRIYVPAAGKVVTSGHVRFDE 732
            PK +    T   +LV+ D+ G I P    G+ YI  F   F+   W Y+++ KS+  +    F  EV +  G  +  LRSD GGE+  R F + C + GIK++    YTP+  G AER    +   TR +L   +V ++FW EA Q AV+++NR  +KAL    TP +      PS    R FG+ AY  L+P+Q+    K  ++++  VM G       +R+Y PA GK++ S  V+FDE
Sbjct:  485 PKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALN-DITPEEKWSSWKPSVEHLRIFGSLAYA-LVPYQKRI--KLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFDE 721          
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Match: A0A7M5UXH8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UXH8_9CNID)

HSP 1 Score: 137 bits (346), Expect = 1.170e-30
Identity = 78/231 (33.77%), Postives = 114/231 (49.35%), Query Frame = 1
Query:   37 TAPFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRWAYMIALKSDAVKALALFVDE------VKALGF--------GVRRLRSDNGGEFVGRAFTQACIDNGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQCAVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRPAGGKFTQRAVMGVMVGYCPNGAGWRIYVP 687
            T PFELV+ DL+G I P    G  Y  +FT  F+   + Y +  KSDA KA+  F+ +      VK L F         V+++RSDNGGE++ + F +  +++ IK E + PY+P   G AER W  +    R++L  SN+ K  WT A   A H+ NR   K +    TP+  + G  P+ +    FG   Y  L P Q+    K   R+  G  +GY      + +Y P
Sbjct:  488 TEPFELVHTDLAGPIEPAAKDGYRYAIIFTDDFSGNLFTYFLKAKSDAPKAVKKFLADIAPFGKVKTLNFFEDVFPVGDVKKMRSDNGGEYISKEFREILVNHSIKHELSAPYSPHQNGTAERNWRTLFEMGRSMLIESNLPKYLWTYAIMTATHIRNRCYVKRIQ--NTPFGLITGTKPNLSKMHIFGTVCYAFLQPEQK----KLDPRSKKGHFIGYDKESPSYLVYFP 712          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6626.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TIQ5_9STRA7.220e-4539.43Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A8J5C4K2_ZINOF5.030e-3435.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A6LWD2_HEVBR1.920e-3232.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A182GYI1_AEDAL5.260e-3234.41Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A6D2IM54_9BRAS6.240e-3234.71Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A4Y2ESB7_ARAVE6.280e-3233.20Retrovirus-related Pol polyprotein from transposon... [more]
A0A2U1MFK9_ARTAN5.930e-3134.02Zinc finger, CCHC-type n=1 Tax=Artemisia annua Tax... [more]
A0A8J5YEG9_9ROSI6.410e-3131.75Integrase catalytic domain-containing protein n=6 ... [more]
Q9C7Y1_ARATH1.160e-3035.27Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]
A0A7M5UXH8_9CNID1.170e-3033.77Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6626contigP-wetherbeei_contig6626:1754..3365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4558.Sb07g028153.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1612
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.75e-38
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2QC@4447|Liliopsida,3IMWS@38820|Poales
DescriptionGAG-pre-integrase domain
Cds size1611
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.3637297-CDS-P-wetherbeei_contig6626:1753..33641683186926.3637297-CDS-P-wetherbeei_contig6626:1753..3364Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6626 1754..3364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6626.2.1prot_P-wetherbeei_contig6626.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6626 1754..3364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6626.2.1

>prot_P-wetherbeei_contig6626.2.1 ID=prot_P-wetherbeei_contig6626.2.1|Name=mRNA_P-wetherbeei_contig6626.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=537bp
RLPTPKTTRRVETAPFELVYVDLSGEIRPPGPRGEHYICLFTCGFTTYRW
AYMIALKSDAVKALALFVDEVKALGFGVRRLRSDNGGEFVGRAFTQACID
NGIKQEFAPPYTPEYMGKAERGWGVIGGPTRALLAASNVEKRFWTEAFQC
AVHLVNRRGTKALPPGQTPYDALHGRPPSTADFRAFGAAAYVHLLPHQRP
AGGKFTQRAVMGVMVGYCPNGAGWRIYVPAAGKVVTSGHVRFDEAVFPST
RLTGTRTDAGEDDVFPWPEENDAATVEGGVTNGPTVDDAATAEPTGARAA
VASAGAGEGSGDRSGGETGAASDSGGGAGGRRGSGGSNITTDCNAGGAAA
ADDPAGASAAGSLTQVPAADDARGSGGAGNDSSSGGSSGGNSVLRGSEST
LGPHSRYHQRSGSFLRPALSNVPSTAGGGGSSGEIDGGGSGRSGDAGAMM
GGGVVHPAALTGDDLVGRQVSVLWDNVDDRRNVWQVGTVVKYKKRARGDY
DIQFPDESGPRQRNFPAADHDASADAGTGAWHVATPG
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mRNA from alignment at P-wetherbeei_contig6626:1754..3365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6626.2.1 ID=mRNA_P-wetherbeei_contig6626.2.1|Name=mRNA_P-wetherbeei_contig6626.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1612bp|location=Sequence derived from alignment at P-wetherbeei_contig6626:1754..3365+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCTGCCTACGCCGAAGACGACGCGGCGAGTCGAGACGGCGCCGTTTGA GCTGGTCTACGTCGATCTATCGGGTGAGATCCGGCCGCCGGGTCCGCGCG GGGAGCACTACATATGTTTGTTCACCTGCGGCTTTACGACCTACCGTTGG GCCTACATGATCGCGCTGAAGAGTGACGCCGTCAAGGCGCTCGCTCTCTT CGTGGACGAGGTGAAGGCCCTCGGCTTTGGCGTCCGGCGGCTGCGCTCGG ATAATGGTGGTGAGTTCGTCGGGCGTGCTTTTACGCAAGCCTGCATTGAC AATGGCATCAAGCAAGAATTTGCGCCGCCTTACACGCCGGAGTACATGGG GAAAGCGGAGCGGGGCTGGGGCGTCATCGGCGGTCCGACTCGCGCCTTGC TGGCCGCATCCAATGTTGAAAAGCGTTTCTGGACGGAAGCTTTCCAATGC GCCGTTCACCTTGTCAACCGGCGCGGCACCAAGGCCCTTCCCCCTGGCCA GACACCGTACGATGCGCTGCACGGCCGTCCGCCCTCGACAGCCGATTTCC GAGCTTTCGGGGCGGCGGCCTATGTGCACCTGCTCCCGCACCAGCGGCCA GCCGGCGGCAAGTTCACGCAACGCGCCGTCATGGGCGTGATGGTCGGCTA CTGTCCTAATGGGGCGGGCTGGCGGATCTACGTTCCGGCGGCGGGAAAGG TGGTGACGTCGGGCCATGTCCGTTTCGACGAGGCGGTTTTCCCCTCCACC CGCCTGACGGGCACCAGGACCGACGCTGGAGAGGACGACGTTTTCCCGTG GCCGGAGGAGAACGACGCGGCTACTGTTGAAGGTGGCGTTACGAACGGCC CGACCGTCGATGATGCGGCAACTGCCGAACCGACAGGAGCAAGAGCAGCT GTGGCTTCCGCGGGCGCAGGCGAGGGCAGCGGTGACAGAAGCGGCGGCGA GACCGGTGCTGCAAGTGACAGCGGTGGCGGCGCTGGCGGCCGCCGCGGCA GCGGCGGGAGCAATATTACAACCGACTGCAACGCCGGGGGTGCAGCAGCT GCCGATGATCCCGCAGGAGCGTCGGCGGCAGGGTCGTTGACGCAGGTTCC CGCTGCGGATGACGCGCGTGGTAGCGGCGGTGCTGGCAATGATAGCAGCA GCGGCGGAAGCAGTGGCGGCAACAGCGTACTTCGTGGTTCAGAGAGCACC CTCGGCCCGCATTCACGCTATCATCAACGCAGCGGCTCGTTTCTACGGCC AGCCCTTTCGAACGTGCCCTCTACGGCGGGCGGTGGAGGCAGCAGTGGCG AAATCGACGGGGGCGGCAGCGGCAGAAGTGGAGACGCTGGTGCCATGATG GGTGGCGGCGTGGTACATCCGGCAGCTTTGACGGGTGACGACCTGGTAGG CCGCCAGGTCAGCGTGCTCTGGGACAACGTTGACGACCGCCGCAACGTCT GGCAAGTAGGAACGGTGGTCAAGTACAAGAAACGTGCCAGGGGGGATTAT GATATTCAGTTTCCTGATGAGAGCGGGCCACGGCAGCGGAATTTCCCGGC GGCGGACCACGATGCGAGCGCCGATGCGGGTACTGGCGCCTGGCATGTTG CCACGCCCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6626:1754..3365+

>mRNA_P-wetherbeei_contig6626.2.1 ID=mRNA_P-wetherbeei_contig6626.2.1|Name=mRNA_P-wetherbeei_contig6626.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1611bp|location=Sequence derived from alignment at P-wetherbeei_contig6626:1754..3365+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCTGCCTACGCCGAAGACGACGCGGCGAGTCGAGACGGCGCCGTTTGA
GCTGGTCTACGTCGATCTATCGGGTGAGATCCGGCCGCCGGGTCCGCGCG
GGGAGCACTACATATGTTTGTTCACCTGCGGCTTTACGACCTACCGTTGG
GCCTACATGATCGCGCTGAAGAGTGACGCCGTCAAGGCGCTCGCTCTCTT
CGTGGACGAGGTGAAGGCCCTCGGCTTTGGCGTCCGGCGGCTGCGCTCGG
ATAATGGTGGTGAGTTCGTCGGGCGTGCTTTTACGCAAGCCTGCATTGAC
AATGGCATCAAGCAAGAATTTGCGCCGCCTTACACGCCGGAGTACATGGG
GAAAGCGGAGCGGGGCTGGGGCGTCATCGGCGGTCCGACTCGCGCCTTGC
TGGCCGCATCCAATGTTGAAAAGCGTTTCTGGACGGAAGCTTTCCAATGC
GCCGTTCACCTTGTCAACCGGCGCGGCACCAAGGCCCTTCCCCCTGGCCA
GACACCGTACGATGCGCTGCACGGCCGTCCGCCCTCGACAGCCGATTTCC
GAGCTTTCGGGGCGGCGGCCTATGTGCACCTGCTCCCGCACCAGCGGCCA
GCCGGCGGCAAGTTCACGCAACGCGCCGTCATGGGCGTGATGGTCGGCTA
CTGTCCTAATGGGGCGGGCTGGCGGATCTACGTTCCGGCGGCGGGAAAGG
TGGTGACGTCGGGCCATGTCCGTTTCGACGAGGCGGTTTTCCCCTCCACC
CGCCTGACGGGCACCAGGACCGACGCTGGAGAGGACGACGTTTTCCCGTG
GCCGGAGGAGAACGACGCGGCTACTGTTGAAGGTGGCGTTACGAACGGCC
CGACCGTCGATGATGCGGCAACTGCCGAACCGACAGGAGCAAGAGCAGCT
GTGGCTTCCGCGGGCGCAGGCGAGGGCAGCGGTGACAGAAGCGGCGGCGA
GACCGGTGCTGCAAGTGACAGCGGTGGCGGCGCTGGCGGCCGCCGCGGCA
GCGGCGGGAGCAATATTACAACCGACTGCAACGCCGGGGGTGCAGCAGCT
GCCGATGATCCCGCAGGAGCGTCGGCGGCAGGGTCGTTGACGCAGGTTCC
CGCTGCGGATGACGCGCGTGGTAGCGGCGGTGCTGGCAATGATAGCAGCA
GCGGCGGAAGCAGTGGCGGCAACAGCGTACTTCGTGGTTCAGAGAGCACC
CTCGGCCCGCATTCACGCTATCATCAACGCAGCGGCTCGTTTCTACGGCC
AGCCCTTTCGAACGTGCCCTCTACGGCGGGCGGTGGAGGCAGCAGTGGCG
AAATCGACGGGGGCGGCAGCGGCAGAAGTGGAGACGCTGGTGCCATGATG
GGTGGCGGCGTGGTACATCCGGCAGCTTTGACGGGTGACGACCTGGTAGG
CCGCCAGGTCAGCGTGCTCTGGGACAACGTTGACGACCGCCGCAACGTCT
GGCAAGTAGGAACGGTGGTCAAGTACAAGAAACGTGCCAGGGGGGATTAT
GATATTCAGTTTCCTGATGAGAGCGGGCCACGGCAGCGGAATTTCCCGGC
GGCGGACCACGATGCGAGCGCCGATGCGGGTACTGGCGCCTGGCATGTTG
CCACGCCCGGC
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