mRNA_P-wetherbeei_contig10215.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10215.3.1
Unique NamemRNA_P-wetherbeei_contig10215.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Match: A0A7X9KKT9_9ACTN (Ku protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KKT9_9ACTN)

HSP 1 Score: 196 bits (497), Expect = 1.110e-62
Identity = 95/113 (84.07%), Postives = 106/113 (93.81%), Query Frame = 1 
Query:    1 MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSAEDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLVEIDPVYFDSPYIV 339
            MPRP+WSGTISFGL+AIPIKL++ VSKKSVSFNQLD+R+MSRIKLKKVSA+ G DVPDE IVKGYEISKGRY++VDPDELEPF+PS TK+IELEEFVDL EIDPVYFDS YIV
Sbjct:    1 MPRPIWSGTISFGLVAIPIKLYNGVSKKSVSFNQLDDRSMSRIKLKKVSADTGDDVPDEHIVKGYEISKGRYVVVDPDELEPFMPSVTKSIELEEFVDLSEIDPVYFDSQYIV 113
[Close]
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Match: A0A7K1B2F3_9ACTN (Non-homologous end joining protein Ku n=2 Tax=root TaxID=1 RepID=A0A7K1B2F3_9ACTN)

HSP 1 Score: 199 bits (507), Expect = 6.920e-62
Identity = 96/113 (84.96%), Postives = 108/113 (95.58%), Query Frame = 1 
Query:    1 MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSAEDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLVEIDPVYFDSPYIV 339
            MPRPVWSGTISFGL+AIPIKLFH VSKKSVSFNQLD+R+MSRI+LKKVSAE G DVP+E IVKGYE+SKGRY++VDPDELEPFIP+ATK+I+LEEFVDL EIDPVYFD+PYIV
Sbjct:    1 MPRPVWSGTISFGLVAIPIKLFHGVSKKSVSFNQLDDRSMSRIRLKKVSAETGEDVPEEHIVKGYELSKGRYVVVDPDELEPFIPAATKSIDLEEFVDLDEIDPVYFDTPYIV 113
[Close]
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Match: A0A539DTX7_9ACTN (Non-homologous end joining protein Ku n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DTX7_9ACTN)

HSP 1 Score: 198 bits (504), Expect = 1.750e-61
Identity = 92/113 (81.42%), Postives = 108/113 (95.58%), Query Frame = 1 
Query:    1 MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSAEDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLVEIDPVYFDSPYIV 339
            MPRPVWSGTISFGL+AIPIKLFH VSKK++SFNQLDERT+SRI+LKKVSA+ G +VPDE IV+G+E+SKGRY++VDPDELEPFIPSATK+I+LEEFVDL EIDPVYFD+PYI+
Sbjct:    1 MPRPVWSGTISFGLVAIPIKLFHGVSKKNISFNQLDERTLSRIRLKKVSADSGDEVPDEHIVRGFEVSKGRYVVVDPDELEPFIPSATKSIDLEEFVDLAEIDPVYFDTPYII 113
[Close]
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Match: A0A3C2AZQ9_9ACTN (Non-homologous end joining protein Ku n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AZQ9_9ACTN)

HSP 1 Score: 193 bits (490), Expect = 1.620e-59
Identity = 90/112 (80.36%), Postives = 107/112 (95.54%), Query Frame = 1 
Query:    1 MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSAEDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLVEIDPVYFDSPYI 336
            MPRPVWSGT+SFGL+AIPIKL+HAVSKKS+SFNQLD+RTMSRIKL+KVSAE G +VPDE IVKGYE+SKGRY++VDP++LEPF+P+ATK+I+LEEFVDL +IDPVYFDS YI
Sbjct:    1 MPRPVWSGTVSFGLVAIPIKLYHAVSKKSISFNQLDDRTMSRIKLRKVSAETGEEVPDEHIVKGYEVSKGRYVVVDPEDLEPFMPAATKSIDLEEFVDLDQIDPVYFDSAYI 112
[Close]
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Match: A0A7W1HJY9_9ACTN (Non-homologous end joining protein Ku n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1HJY9_9ACTN)

HSP 1 Score: 191 bits (484), Expect = 1.100e-58
Identity = 89/111 (80.18%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:    1 MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSAEDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLVEIDPVYFDSPY 333
            MPRPVWSGTISFGL+AIP+KLF+AV++KSVSFNQLDERTMSRI+ +KVS E G +VPDE I+KGYE+SKGRY++VDPDELEPFIP+ATKT++LEEFVDL EIDPVYFDS Y
Sbjct:    1 MPRPVWSGTISFGLVAIPVKLFNAVNRKSVSFNQLDERTMSRIRYRKVSDETGDEVPDEHIIKGYEVSKGRYVVVDPDELEPFIPAATKTVDLEEFVDLAEIDPVYFDSAY 111
[Close]
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Match: A0A848UF48_9ACTN (Non-homologous end joining protein Ku n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UF48_9ACTN)

HSP 1 Score: 189 bits (480), Expect = 9.300e-58
Identity = 90/113 (79.65%), Postives = 104/113 (92.04%), Query Frame = 1 
Query:    1 MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSAEDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLVEIDPVYFDSPYIV 339
            MPRPVW+GTISFGL+AIP+KLFHAV K+SVSFNQLD+RTM+RI+ KKVSA DG +VPDE IVKGYE+SK RYI+VDPDELEPFIPSATKT+ELEEFVDL EIDPV++D+ Y V
Sbjct:    1 MPRPVWTGTISFGLVAIPVKLFHAVRKQSVSFNQLDDRTMARIRYKKVSAADGEEVPDEHIVKGYEVSKDRYIIVDPDELEPFIPSATKTVELEEFVDLDEIDPVFYDNAYYV 113
[Close]
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Match: A0A7W1LS24_9ACTN (Non-homologous end joining protein Ku n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1LS24_9ACTN)

HSP 1 Score: 187 bits (476), Expect = 1.060e-57
Identity = 89/113 (78.76%), Postives = 103/113 (91.15%), Query Frame = 1 
Query:    1 MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSAEDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLVEIDPVYFDSPYIV 339
            MPRPVW+GTISFGL+AIP+KLF+AV ++SVSFNQLDERTMSRI+ +KVS  DG +VPDE IVKGYE++KGRY+LVDPDELEPFIPSATKT+ELEEFVDL EIDPVYFD  + V
Sbjct:    1 MPRPVWTGTISFGLVAIPVKLFNAVRRQSVSFNQLDERTMSRIRYRKVSDADGEEVPDEHIVKGYEVAKGRYVLVDPDELEPFIPSATKTVELEEFVDLTEIDPVYFDGNFYV 113
[Close]
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Match: A0A7W0KYG8_9ACTN (Non-homologous end joining protein Ku n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KYG8_9ACTN)

HSP 1 Score: 188 bits (477), Expect = 1.130e-57
Identity = 87/113 (76.99%), Postives = 104/113 (92.04%), Query Frame = 1 
Query:    1 MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSAEDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLVEIDPVYFDSPYIV 339
            MPRPVW+GTISFGL+AIP+KLFHAVS+K VSFNQLDERTMSRI+ +KVS E G +VP++ IVKGYE+SKGRY++VDPDELEPF+PSATK+++LEEFVDL +IDPVYFDS Y V
Sbjct:    1 MPRPVWTGTISFGLVAIPVKLFHAVSRKGVSFNQLDERTMSRIRYRKVSDETGEEVPEQHIVKGYEVSKGRYVIVDPDELEPFMPSATKSVDLEEFVDLADIDPVYFDSSYYV 113
[Close]
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Match: A0A7W1Z9V7_9ACTN (Non-homologous end joining protein Ku n=3 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1Z9V7_9ACTN)

HSP 1 Score: 185 bits (469), Expect = 1.220e-56
Identity = 86/111 (77.48%), Postives = 102/111 (91.89%), Query Frame = 1 
Query:    1 MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSAEDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLVEIDPVYFDSPY 333
            MPRPVW+GTISFGL+AIP+KLF+AV +KSVSFNQLDERTMSRI+ +KVS EDG +VPDE IVKGYE+SKGRY++VDP+ELEP +PSATKT+ELEEFVDL EIDP+Y+D  Y
Sbjct:    1 MPRPVWTGTISFGLVAIPVKLFNAVKRKSVSFNQLDERTMSRIRYRKVSDEDGEEVPDEHIVKGYEVSKGRYVVVDPEELEPLMPSATKTVELEEFVDLSEIDPMYYDGTY 111
[Close]
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Match: A0A4R7HYD3_9ACTN (Non-homologous end joining protein Ku n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A4R7HYD3_9ACTN)

HSP 1 Score: 184 bits (466), Expect = 4.490e-56
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 1 
Query:    1 MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSAEDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLVEIDPVYFDSPYIV 339
            M RPVW+GTISFGL+AIPIKLFHAV +K++SFNQLD+R+MSRI+ +KVSA DG  VPDE IVKGYE+SK RY++VDPDELEPF+PSATKTI+LEEFVDL EIDPVYFDS Y V
Sbjct:    1 MARPVWNGTISFGLVAIPIKLFHAVRRKNISFNQLDDRSMSRIRYQKVSASDGEVVPDEHIVKGYEVSKDRYVVVDPDELEPFLPSATKTIDLEEFVDLEEIDPVYFDSAYYV 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10215.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KKT9_9ACTN1.110e-6284.07Ku protein (Fragment) n=1 Tax=Actinomycetia bacter... [more]
A0A7K1B2F3_9ACTN6.920e-6284.96Non-homologous end joining protein Ku n=2 Tax=root... [more]
A0A539DTX7_9ACTN1.750e-6181.42Non-homologous end joining protein Ku n=1 Tax=Acid... [more]
A0A3C2AZQ9_9ACTN1.620e-5980.36Non-homologous end joining protein Ku n=1 Tax=Acid... [more]
A0A7W1HJY9_9ACTN1.100e-5880.18Non-homologous end joining protein Ku n=1 Tax=Acid... [more]
A0A848UF48_9ACTN9.300e-5879.65Non-homologous end joining protein Ku n=1 Tax=Ilum... [more]
A0A7W1LS24_9ACTN1.060e-5778.76Non-homologous end joining protein Ku n=1 Tax=Acid... [more]
A0A7W0KYG8_9ACTN1.130e-5776.99Non-homologous end joining protein Ku n=1 Tax=Acid... [more]
A0A7W1Z9V7_9ACTN1.220e-5677.48Non-homologous end joining protein Ku n=3 Tax=Acid... [more]
A0A4R7HYD3_9ACTN4.490e-5677.88Non-homologous end joining protein Ku n=2 Tax=Acid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10215contigP-wetherbeei_contig10215:2050..2388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1313172.YM304_15090
Preferred nameku
PFAMsKu
Model size339
Max annot lvl201174|Actinobacteria
KEGG koko:K10979
KEGG Pathwayko03450,map03450
Hectar predicted targeting categoryother localisation
GOsGO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050790,GO:0050896,GO:0051340,GO:0051351,GO:0051716,GO:0065007,GO:0065009,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Exons1
Evalue4.61e-52
EggNOG OGsCOG1273@1|root,COG1273@2|Bacteria,2GJMU@201174|Actinobacteria
DescriptionWith LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
Cds size339
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.3859386-CDS-P-wetherbeei_contig10215:2049..23881683185859.3859386-CDS-P-wetherbeei_contig10215:2049..2388Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10215 2050..2388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10215.3.1prot_P-wetherbeei_contig10215.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10215 2050..2388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10215.3.1

>prot_P-wetherbeei_contig10215.3.1 ID=prot_P-wetherbeei_contig10215.3.1|Name=mRNA_P-wetherbeei_contig10215.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MPRPVWSGTISFGLIAIPIKLFHAVSKKSVSFNQLDERTMSRIKLKKVSA
EDGSDVPDESIVKGYEISKGRYILVDPDELEPFIPSATKTIELEEFVDLV
EIDPVYFDSPYIV
back to top

mRNA from alignment at P-wetherbeei_contig10215:2050..2388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10215.3.1 ID=mRNA_P-wetherbeei_contig10215.3.1|Name=mRNA_P-wetherbeei_contig10215.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig10215:2050..2388+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAGGCCAGTGTGGAGTGGAACGATCAGCTTCGGGCTCATTGCGAT
CCCGATCAAGCTCTTCCATGCGGTGAGCAAGAAGAGCGTGTCCTTCAACC
AGCTCGACGAGCGGACGATGAGTCGCATCAAGCTGAAGAAGGTGTCGGCC
GAGGACGGCTCCGACGTGCCCGACGAGAGCATCGTGAAGGGCTACGAGAT
CAGCAAGGGCCGCTACATCCTCGTCGACCCCGACGAGCTCGAGCCGTTCA
TCCCGTCGGCCACGAAGACCATCGAACTCGAAGAGTTCGTCGACCTCGTC
GAGATCGACCCGGTGTACTTCGACTCGCCGTACATCGTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10215:2050..2388+

>mRNA_P-wetherbeei_contig10215.3.1 ID=mRNA_P-wetherbeei_contig10215.3.1|Name=mRNA_P-wetherbeei_contig10215.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig10215:2050..2388+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAGGCCAGTGTGGAGTGGAACGATCAGCTTCGGGCTCATTGCGAT
CCCGATCAAGCTCTTCCATGCGGTGAGCAAGAAGAGCGTGTCCTTCAACC
AGCTCGACGAGCGGACGATGAGTCGCATCAAGCTGAAGAAGGTGTCGGCC
GAGGACGGCTCCGACGTGCCCGACGAGAGCATCGTGAAGGGCTACGAGAT
CAGCAAGGGCCGCTACATCCTCGTCGACCCCGACGAGCTCGAGCCGTTCA
TCCCGTCGGCCACGAAGACCATCGAACTCGAAGAGTTCGTCGACCTCGTC
GAGATCGACCCGGTGTACTTCGACTCGCCGTACATCGTC
back to top