mRNA_P-wetherbeei_contig12752.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12752.1.1
Unique NamemRNA_P-wetherbeei_contig12752.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Match: L1J1M7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J1M7_GUITC)

HSP 1 Score: 73.2 bits (178), Expect = 8.880e-16
Identity = 35/55 (63.64%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRAVSRGR 165
            M+PLVRDLYKRF+LVGRDYP GGL+ ++ +VK+AF  N  L++D E++RAV+RGR
Sbjct:    1 MHPLVRDLYKRFILVGRDYP-GGLQIIKKKVKEAFFTNRHLEDDIEIRRAVARGR 54          
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Match: A0A067CLU1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CLU1_SAPPC)

HSP 1 Score: 72.0 bits (175), Expect = 5.090e-15
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRAVSRGR 165
            M P VRDLYKRFL+VG+DYP G LEYVR +VK+AF   AAL ++ E+K+AVSRGR
Sbjct:    1 MQPRVRDLYKRFLVVGKDYPLG-LEYVRPKVKEAFFKKAALADEAEIKKAVSRGR 54          
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Match: A0A8J5XPH7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPH7_DIALT)

HSP 1 Score: 69.7 bits (169), Expect = 1.980e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRAVSRGR 165
            M+PLVRDLYKRFLLVG+DYP GGL  VR + K+A R  A L ++ E+KRAV+RGR
Sbjct:    1 MHPLVRDLYKRFLLVGKDYP-GGLALVRRKAKEALRNQAHLQDELEIKRAVARGR 54          
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Match: A0A485K3V6_9STRA (Aste57867_786 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K3V6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.780e-14
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRAVSRGR 165
            M+PLVRD YKR LLVGRDYP G L+YVR + K+AF   A L  D+E+KRAV RGR
Sbjct:    2 MHPLVRDAYKRLLLVGRDYPLG-LDYVREKAKEAFLKQAHLTNDEEIKRAVHRGR 55          
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Match: A0A6G0WG47_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WG47_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.730e-14
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRAVSRGR 165
            M+PLVRD+YKR L+VGRDYP G L+YVR + K+AF   A L  D+E+KRAV RGR
Sbjct:    1 MHPLVRDVYKRILVVGRDYPMG-LDYVREKAKEAFYKEAHLTADEEIKRAVHRGR 54          
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Match: A0A7S1UA59_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UA59_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.200e-13
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRAVSRGR 165
            M+PLVRDLYKRFLLVGR+YP G L  VR   K A  ANA L E+ E+KRAV++GR
Sbjct:   28 MHPLVRDLYKRFLLVGREYPTG-LADVRARAKAAILANAHLTEEVEIKRAVAKGR 81          
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Match: A0A1V9Z5Y7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5Y7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.580e-13
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRAVSRGR 165
            M   VRDLYKRFLLVG+DYP G LEYVR +VK+AF   A L +D ++K AV+RGR
Sbjct:    1 MQSRVRDLYKRFLLVGKDYPLG-LEYVRPKVKEAFFQQAQLQDDADIKVAVARGR 54          
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Match: A0A5A8CP96_CAFRO (Complex1_LYR_dom domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CP96_CAFRO)

HSP 1 Score: 65.1 bits (157), Expect = 1.260e-12
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRAVSRGR 165
            M+PLVRDLYKRFL+ GRDYP G L+ VR   K AF+ NA L ++  +KRAV++GR
Sbjct:    1 MHPLVRDLYKRFLVAGRDYPQG-LDVVRRRAKLAFQENAHLTDEVAIKRAVAKGR 54          
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Match: A0A5D6XS07_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS07_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.800e-11
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRAVSRGR 165
            M+P VRDLYKRFL VG DYP G L YVR + K+AF AN  L +  E+KRA+ RGR
Sbjct:    1 MDPKVRDLYKRFLHVGGDYPLG-LAYVREKAKEAFFANRHLTDPVEIKRAIHRGR 54          
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Match: A0A3M6VMH4_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMH4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.320e-11
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRAVSRGR 165
            MNP VRDLYKRFLLVGRDYP G L +VR  VK AF  N+ L     +K+A+ RGR
Sbjct:    1 MNPKVRDLYKRFLLVGRDYPLG-LNHVRKTVKPAFFENSDLTGPLAIKKAIKRGR 54          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12752.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L1J1M7_GUITC8.880e-1663.64Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A067CLU1_SAPPC5.090e-1567.27Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A8J5XPH7_DIALT1.980e-1465.45Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A485K3V6_9STRA2.780e-1465.45Aste57867_786 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A6G0WG47_9STRA5.730e-1463.64Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1UA59_9STRA2.200e-1365.45Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9Z5Y7_9STRA9.580e-1363.64Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A5A8CP96_CAFRO1.260e-1260.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A5D6XS07_9STRA1.800e-1161.82Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A3M6VMH4_9STRA2.320e-1161.82Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12752contigP-wetherbeei_contig12752:434..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog42099.EPrPV00000014084
PFAMsComplex1_LYR
Model size165
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.92e-13
EggNOG OGs2D4PQ@1|root,2S531@2759|Eukaryota,1MHWB@121069|Pythiales
DescriptionLYR motif-containing protein 5. Source PGD
Cds size165
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.9637866-CDS-P-wetherbeei_contig12752:433..5981683185959.9637866-CDS-P-wetherbeei_contig12752:433..598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12752 434..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12752.1.1prot_P-wetherbeei_contig12752.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12752 434..598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12752.1.1

>prot_P-wetherbeei_contig12752.1.1 ID=prot_P-wetherbeei_contig12752.1.1|Name=mRNA_P-wetherbeei_contig12752.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
MNPLVRDLYKRFLLVGRDYPAGGLEYVRGEVKKAFRANAALDEDDEVKRA
VSRGR
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mRNA from alignment at P-wetherbeei_contig12752:434..598-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12752.1.1 ID=mRNA_P-wetherbeei_contig12752.1.1|Name=mRNA_P-wetherbeei_contig12752.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig12752:434..598- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCCCCTCGTGCGAGATCTTTACAAGCGATTCCTGCTCGTCGGCCG AGACTATCCAGCCGGCGGCTTGGAATACGTGAGAGGGGAGGTGAAGAAGG CCTTTCGAGCAAACGCTGCTCTCGACGAAGACGACGAAGTGAAGAGGGCC GTGTCTCGTGGGAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12752:434..598-

>mRNA_P-wetherbeei_contig12752.1.1 ID=mRNA_P-wetherbeei_contig12752.1.1|Name=mRNA_P-wetherbeei_contig12752.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig12752:434..598- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCCCCTCGTGCGAGATCTTTACAAGCGATTCCTGCTCGTCGGCCG
AGACTATCCAGCCGGCGGCTTGGAATACGTGAGAGGGGAGGTGAAGAAGG
CCTTTCGAGCAAACGCTGCTCTCGACGAAGACGACGAAGTGAAGAGGGCC
GTGTCTCGTGGGAGA
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