mRNA_P-wetherbeei_contig6619.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6619.2.1
Unique NamemRNA_P-wetherbeei_contig6619.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6619.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6619contigP-wetherbeei_contig6619:1658..2853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size950
Hectar predicted targeting categoryother localisation
Exons2
Cds size948
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.8485959-CDS-P-wetherbeei_contig6619:1659..20081683186925.8485959-CDS-P-wetherbeei_contig6619:1659..2008Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6619 1660..2008 -
1683186925.8600876-CDS-P-wetherbeei_contig6619:2254..28531683186925.8600876-CDS-P-wetherbeei_contig6619:2254..2853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6619 2255..2853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6619.2.1prot_P-wetherbeei_contig6619.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6619 1660..2853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6619.2.1

>prot_P-wetherbeei_contig6619.2.1 ID=prot_P-wetherbeei_contig6619.2.1|Name=mRNA_P-wetherbeei_contig6619.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=316bp
AKRAAADRAAGSGGAGGASYGSHSSHALSRSGTTPGMGGGAAAVLAAQQV
ASAGADRPGAFSVTGGGSASVVADAKEASLRRMEESKTGGDGFKYGPRDV
YGSGGDKIYASGDYHDKGNDDEHSGRFHQRGGGDGDEYSGQYSGAWIPSV
IGSGAGPDELIAMERGRVAGTVPITAGERLRLLWSSEETYRMHPPHAEII
VLLLCFQGAATAQASLLDRGCTPWTVAVGVALWVLFPCLLLLFVWQFVVA
RVRAEGAVLVYVRDDADAGVTVAGMRRIGSGGSRHSLGYGEDRMNQEQSV
STTTGERSGPSGGSGG
back to top

mRNA from alignment at P-wetherbeei_contig6619:1658..2853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6619.2.1 ID=mRNA_P-wetherbeei_contig6619.2.1|Name=mRNA_P-wetherbeei_contig6619.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1196bp|location=Sequence derived from alignment at P-wetherbeei_contig6619:1658..2853- (Phaeothamnion wetherbeei SAG_119_79)
GCAAAGCGTGCCGCCGCCGACCGGGCCGCCGGCAGCGGCGGCGCCGGCGG
TGCGTCGTATGGCAGCCACAGCAGCCACGCCCTCAGCCGCAGCGGCACAA
CTCCTGGGATGGGCGGAGGCGCAGCCGCTGTCCTCGCCGCCCAGCAGGTC
GCGTCGGCCGGCGCCGACCGGCCCGGCGCGTTTTCCGTCACCGGCGGCGG
CAGCGCGTCTGTGGTGGCGGACGCGAAGGAGGCCAGCCTGCGACGCATGG
AGGAGAGCAAAACCGGTGGCGACGGCTTCAAGTACGGCCCTCGCGACGTT
TACGGCTCTGGCGGCGACAAAATCTACGCCTCCGGCGACTACCACGACAA
AGGAAACGACGACGAACACAGCGGTCGCTTCCACCAGCGCGGCGGCGGAG
ACGGCGACGAGTACAGCGGCCAGTACAGCGGCGCATGGATACCATCGGTG
ATTGGCTCGGGAGCGGGCCCGGACGAGCTGATTGCGATGGAGCGAGGCCG
CGTTGCCGGCACCGTCCCCATCACGGCGGGCGAGCGGCTGCGGTTGCTGT
GGAGCTCCGAGGAGACGTACCGAATGCACCCGCCGCATGCCGAGATCATG
TGAGTTTCCTTCTTCTCCTTCGTTCTTTTCCAGCTGTCCGCTTTTCCGTC
GCCTTGCTAAACTCTGTCGTCTTCTTCATTCCGATGGTGAGCAACCTGTT
TCATTGTTAGGCTGCCACAGCCACCGCGGTCGCCGCCGCCACCGCAGGCG
CCCCATACTTGCTTCGAACACCAACCACATTGTTTCTAAACCGTTTTCCT
CCTCGCCTCCTCCCCCTGCTTCTTGATTTGCTCTCTACTCCACAGCGTCC
TGCTACTGTGCTTCCAAGGCGCGGCTACCGCCCAAGCCTCCCTGCTCGAC
CGCGGCTGCACCCCGTGGACCGTTGCTGTCGGCGTTGCCCTCTGGGTCCT
CTTTCCGTGCCTGCTGCTCCTTTTCGTCTGGCAGTTCGTCGTCGCCCGCG
TCCGCGCCGAGGGCGCCGTCCTGGTCTACGTGCGCGACGATGCCGACGCG
GGCGTGACGGTCGCCGGCATGCGCCGCATCGGCTCAGGTGGCAGCCGCCA
CAGCCTCGGCTACGGCGAGGACCGGATGAACCAGGAGCAGAGCGTCAGCA
CCACCACTGGCGAGCGCAGCGGCCCCAGCGGCGGCAGCGGCGGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6619:1658..2853-

>mRNA_P-wetherbeei_contig6619.2.1 ID=mRNA_P-wetherbeei_contig6619.2.1|Name=mRNA_P-wetherbeei_contig6619.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=948bp|location=Sequence derived from alignment at P-wetherbeei_contig6619:1658..2853- (Phaeothamnion wetherbeei SAG_119_79)
GCAAAGCGTGCCGCCGCCGACCGGGCCGCCGGCAGCGGCGGCGCCGGCGG
TGCGTCGTATGGCAGCCACAGCAGCCACGCCCTCAGCCGCAGCGGCACAA
CTCCTGGGATGGGCGGAGGCGCAGCCGCTGTCCTCGCCGCCCAGCAGGTC
GCGTCGGCCGGCGCCGACCGGCCCGGCGCGTTTTCCGTCACCGGCGGCGG
CAGCGCGTCTGTGGTGGCGGACGCGAAGGAGGCCAGCCTGCGACGCATGG
AGGAGAGCAAAACCGGTGGCGACGGCTTCAAGTACGGCCCTCGCGACGTT
TACGGCTCTGGCGGCGACAAAATCTACGCCTCCGGCGACTACCACGACAA
AGGAAACGACGACGAACACAGCGGTCGCTTCCACCAGCGCGGCGGCGGAG
ACGGCGACGAGTACAGCGGCCAGTACAGCGGCGCATGGATACCATCGGTG
ATTGGCTCGGGAGCGGGCCCGGACGAGCTGATTGCGATGGAGCGAGGCCG
CGTTGCCGGCACCGTCCCCATCACGGCGGGCGAGCGGCTGCGGTTGCTGT
GGAGCTCCGAGGAGACGTACCGAATGCACCCGCCGCATGCCGAGATCATC
GTCCTGCTACTGTGCTTCCAAGGCGCGGCTACCGCCCAAGCCTCCCTGCT
CGACCGCGGCTGCACCCCGTGGACCGTTGCTGTCGGCGTTGCCCTCTGGG
TCCTCTTTCCGTGCCTGCTGCTCCTTTTCGTCTGGCAGTTCGTCGTCGCC
CGCGTCCGCGCCGAGGGCGCCGTCCTGGTCTACGTGCGCGACGATGCCGA
CGCGGGCGTGACGGTCGCCGGCATGCGCCGCATCGGCTCAGGTGGCAGCC
GCCACAGCCTCGGCTACGGCGAGGACCGGATGAACCAGGAGCAGAGCGTC
AGCACCACCACTGGCGAGCGCAGCGGCCCCAGCGGCGGCAGCGGCGGC
back to top