mRNA_P-wetherbeei_contig6617.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6617.1.1
Unique NamemRNA_P-wetherbeei_contig6617.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Match: A0A836C8A3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A3_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.200e-51
Identity = 89/164 (54.27%), Postives = 118/164 (71.95%), Query Frame = 1
Query:   64 QRNADADAVFFVTGANRGIGLEMAKQLLGRTQGVIVGACRSPNDATALQQLVEGNPNRVRIMQLDLTDQASITAMGDRMANDH-GRCDLLLNVAGILGDAKTTPGPERSLSAVERDWMLYSIQVNCVGPVMVTQALRALLHTAKTSRA--PSVVANISARVGSI 546
            +RNAD  AVF +T A+RG+GLE+AKQL  RTQG ++ +CR P+ A  LQ L + +P R+ +++LD+TDQAS+ A    +A  H GR D L NVAG+LGD + TPGPERSL A++RDW+ +S++VN +GPVM+ QA+   L T    RA  PSVV N SARVGSI
Sbjct:   31 ERNADTGAVFLLTAASRGLGLELAKQLASRTQGHVIASCRQPSKALELQALAQSHPGRMTVLELDVTDQASVDAAAAHVAALHNGRLDALFNVAGLLGDGRATPGPERSLGAIQRDWLRHSMEVNVIGPVMLAQAMAPHLRTTGQGRAKTPSVVVNFSARVGSI 194          
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Match: D7FPJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ1_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.020e-47
Identity = 89/179 (49.72%), Postives = 124/179 (69.27%), Query Frame = 1
Query:   31 VVSLQPKPAAAQRNADADAVFFVTGANRGIGLEMAKQLLGRTQGVIVGACRSPNDATALQQL--VEGNPNRVRIMQLDLTDQASITAMGDRMANDHGRCDLLLNVAGILGDAKTTPGPERSLSAVERDWMLYSIQVNCVGPVMVTQALRALLHT-AKT----SRAPSVVANISARVGSI 546
            VV      AAA+RNAD  +V FVTGANRGIGLE+ +QLL R +G +V ACR P+ A  L+ L  + GN  R+ ++++D+ DQ S+    + + + +GR DLL NVAG+LGD K TPGPERS+ A++RDW+ ++++VN +GP+M+  AL  LL + AK     ++ PSVV N SARVGSI
Sbjct:   21 VVKFVKTEAAARRNADPGSVAFVTGANRGIGLEVTRQLLERAKGTVVAACRDPSSAADLRALGRIAGNEKRLDMVKMDIEDQTSLETAAEHVRSTYGRVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVAALTPLLESPAKKGDDGAKPPSVVVNFSARVGSI 199          
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Match: A0A7S3L7K7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7K7_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.130e-46
Identity = 90/173 (52.02%), Postives = 115/173 (66.47%), Query Frame = 1
Query:   64 QRNADADAVFFVTGANRGIGLEMAKQLLGRTQGVIVGACRSPNDATALQQLVEG--NPNRVRIMQLDLTDQASITAMGDRMANDHGRCDLLLNVAGILGDAKTTPGPERSLSAVERDWMLYSIQVNCVGPVMVTQALRALLHTAKT----------SRAPSVVANISARVGSI 546
            +RN D +AVF VTGA+RGIGL+  K L  +TQG IV  CR P  AT L + +    NP+RV ++ LDL +Q+SI A G R+ N + R D+LLNVAG+LGD+KTTPGPERSL+ V+R W   S+ +N +GPVMVTQ L  LL   +            R  +VVAN+SARVGSI
Sbjct:   79 KRNQDPEAVFVVTGASRGIGLQFVKALTTKTQGKIVACCRKPEQATQLNEFIGTLPNPSRVEVIPLDLEEQSSIEAFGTRVRNTYNRVDILLNVAGLLGDSKTTPGPERSLARVDRKWFETSLAINLIGPVMVTQELVPLLGQRRRPRKDNDDGTKDRPAAVVANLSARVGSI 251          
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Match: A0A7S4MLR2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MLR2_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.230e-44
Identity = 92/185 (49.73%), Postives = 118/185 (63.78%), Query Frame = 1
Query:   64 QRNADADAVFFVTGANRGIGLEMAKQLLGRTQGVIVGACRSPNDATALQQLVEGNP----NRVRIMQLDLTDQASITAMGDRMANDHGRCDLLLNVAGILGDA-KTTPGPERSLSAVERDWMLYSIQVNCVGPVMVTQALRALLHTA----------KTS---------RAPSVVANISARVGSI 546
            QRNAD  AVF +TGANRGIGL+  K +L R++G I   CRSP DA AL+ +    P     R+R+++LD+ DQ SI    D +  ++GR D LLNVAGILGD  ++TPGPERSL  ++R+W   S+ VN +GPVM+ QAL  L+ T           KTS         RAPS+VAN+SARVGSI
Sbjct:   94 QRNADPHAVFVITGANRGIGLQFVKAVLDRSRGRIAACCRSPRDAEALEAVKASLPAEERERIRLVRLDVEDQMSIEGAADEIRTEYGRVDALLNVAGILGDGGESTPGPERSLGKIDREWTAKSLAVNVIGPVMLAQALAPLMRTKGGRGQRRTRRKTSDEGEEKEEQRAPSIVANLSARVGSI 278          
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Match: A0A7S2UED2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UED2_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.100e-42
Identity = 83/181 (45.86%), Postives = 120/181 (66.30%), Query Frame = 1
Query:   37 SLQPKPAAAQRNADADAVFFVTGANRGIGLEMAKQLLGRTQGVIVGACRSPNDATALQQLVEG-------NPNRVRIMQLDLTDQASITAMGDRMANDHGRCDLLLNVAGILGDAKTTPGPERSLSAVERDWMLYSIQVNCVGPVMVTQALRALLHTAKTS----RAPSVVANISARVGSI 546
            S  P   A +RN D +AV  VTGA+RGIGL+  K L+ RT+G IV  CRSP +A  L   +E        + +R+ +++LD+ DQ SI  + + + N + R D+LLNVAG+LGD  +TPGPERSL+ ++RDW+  S+ VN +GPVM++QAL  L+ + +      RA +++AN+SARVGSI
Sbjct:   55 STDPSSNAMKRNQDPNAVHVVTGASRGIGLQFVKSLIDRTEGKIVACCRSPENAHGLHTFLETMSLTDSLDRDRIEVLKLDIEDQTSIDELSNSIRNSYNRVDVLLNVAGLLGDGTSTPGPERSLAKLDRDWIEKSMAVNVIGPVMLSQALSPLMASPQRGKEDKRATTLIANLSARVGSI 235          
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Match: A0A7S3PXF5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXF5_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.670e-42
Identity = 80/167 (47.90%), Postives = 111/167 (66.47%), Query Frame = 1
Query:   64 QRNADADAVFFVTGANRGIGLEMAKQLLGRTQGVIVGACRSPNDATALQQLVEGNPN----RVRIMQLDLTDQASITAMGDRMANDHGRCDLLLNVAGILGDAKTTPGPERSLSAVERDWMLYSIQVNCVGPVMVTQALRALLHTA--KTSRAPSVVANISARVGSI 546
            +RN DADAVF VTGA+RGIGL++ K L  RT+G IV  CR+P +A  L   ++  P     R+ +  LDL +Q +I  +G  + + H R D+L NVAGILGD K TPGPERSL +++R+W + S+ VN +GPV ++Q L  ++ +   K  R  SV+ N+SARVGSI
Sbjct:   87 KRNNDADAVFVVTGASRGIGLQILKDLATRTKGTIVACCRAPKEADHLHSFIKSLPTNESRRILLKSLDLEEQETIETLGKEIEDSHKRVDVLYNVAGILGDGKNTPGPERSLRSLDRNWAMKSMNVNYIGPVSLSQVLAPMMRSTLKKDDRGKSVIVNLSARVGSI 253          
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Match: B7FYH7_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYH7_PHATC)

HSP 1 Score: 150 bits (379), Expect = 5.740e-42
Identity = 82/164 (50.00%), Postives = 109/164 (66.46%), Query Frame = 1
Query:   88 VFFVTGANRGIGLEMAKQLLGRTQGVIVGACRSPNDATALQQLVEG--NPNRVRIMQLDLTDQASITAMGDRMANDHGRCDLLLNVAGILGDAKTTPGPERSLSAVERDWMLYSIQVNCVGPVMVTQALRALLHTAKT---------SRAPSVVANISARVGSI 546
            VF VTGA+RGIGL+  K L+ R +G IV  CRSP  A  LQ+ +    +P R+RI+ LDL DQ SI   G  +    GR D+LLNVAG+LGDAKTTPGPERSL+ VERDW   ++ +N +GPVM+++ L  L+   +          +RA +V+A++SARVGSI
Sbjct:    1 VFVVTGASRGIGLQFVKTLILRARGSIVACCRSPEKAELLQEFIATLEDPRRIRIVSLDLEDQTSIERAGAEIKEMFGRVDMLLNVAGLLGDAKTTPGPERSLAKVERDWFEKTLAINTIGPVMLSKELSPLMMQRRKRKSSDNDTETRAVAVIASLSARVGSI 164          
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Match: A0A448YYN6_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYN6_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.460e-41
Identity = 85/180 (47.22%), Postives = 115/180 (63.89%), Query Frame = 1
Query:   67 RNADADAVFFVTGANRGIGLEMAKQLLGRTQGVIVGACRSPNDATALQQLV----EGNPNRVRIMQLDLTDQASITAMGDRMANDHGRCDLLLNVAGILGDAKTTPGPERSLSAVERDWMLYSIQVNCVGPVMVTQALRALLHTAKTS----------------RAPSVVANISARVGSI 546
            RN+D DAVF V GA+RGIGL+   +LL  T+G ++  CRSP+DA  LQ L+    + + NRV +++LD+ +Q SI      +   +GR DLLLNVAGILGD K TPGPERS++ +ER+WM  + QVN +GPVM+ + L  L+  A+ +                RA  VVAN+SARVGSI
Sbjct:   95 RNSDPDAVFLVNGASRGIGLQFVSKLLSDTKGRVIAGCRSPDDAPKLQDLLSTLDKKSRNRVEVIKLDVENQDSIELSAAEIKVQYGRVDLLLNVAGILGDGKNTPGPERSVAKIEREWMEKTFQVNVIGPVMLAKELAPLMTQARRTGRRKADSSDETLSEKQRAVGVVANLSARVGSI 274          
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Match: A0A6U3XUM5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3XUM5_9STRA)

HSP 1 Score: 151 bits (381), Expect = 6.290e-41
Identity = 82/179 (45.81%), Postives = 113/179 (63.13%), Query Frame = 1
Query:   67 RNADADAVFFVTGANRGIGLEMAKQLLGRTQGVIVGACRSPNDATALQQLVEGNPNRVRIMQLDLTDQASITAMGDRMANDHGRCDLLLNVAGILGDAK-TTPGPERSLSAVERDWMLYSIQVNCVGPVMVTQALRALLHTA------------------KTSRAPSVVANISARVGSI 546
            RN+D++AVF V+GA+RGIGL+    LL RTQG I+  CRSP  A  L  +   + +R+ ++ LDL DQ++I A+G ++   + R D L NVAGILGD   +TPGPERSL+++ERDW+  S+ VN VGP M+ +AL  L+ T                    T R P+V+ N+SARVGSI
Sbjct:  117 RNSDSNAVFVVSGASRGIGLQFVSSLLERTQGKIIACCRSPATADQLNNIASQHTDRIEVLPLDLEDQSTIDALGLQLTKTYQRIDALFNVAGILGDGGISTPGPERSLASIERDWLEKSLAVNIVGPTMLVKALSPLMRTKGKRKILIDNGGKQLVVIPPTDRPPTVIVNLSARVGSI 295          
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Match: A0A7S2HD28_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HD28_9STRA)

HSP 1 Score: 150 bits (379), Expect = 7.390e-41
Identity = 81/177 (45.76%), Postives = 113/177 (63.84%), Query Frame = 1
Query:   64 QRNADADAVFFVTGANRGIGLEMAKQLLGRTQGVIVGACRSPNDATALQQLVEGNPN---RVRIMQLDLTDQASITAMGDRMANDHGRCDLLLNVAGILGDAKTTPGPERSLSAVERDWMLYSIQVNCVGPVMVTQALRALLHTAKTS-------------RAPSVVANISARVGSI 546
            +RN D +AVF V G++RGIGL+  K L+ R+QG I+  CRSP+ A  L + +  +P    RV+ +QLD+ DQASI A  + +   + R D L NVAGILGD K+ PGPERSLS ++RDW+  ++ VN +GPVM++QAL  ++ +                 RA SV+ N+SARVGSI
Sbjct:   94 KRNGDPNAVFVVNGSSRGIGLQFVKSLVDRSQGTILACCRSPDSADKLNEFLSSSPQASQRVKTIQLDVEDQASIDAAAEEIKTSYNRVDCLFNVAGILGDGKSDPGPERSLSKLDRDWVEKTMAVNVIGPVMLSQALAPMMISKXXXXXXXXXXXXXXXXRAQSVIVNLSARVGSI 270          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6617.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8A3_9STRA2.200e-5154.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FPJ1_ECTSI1.020e-4749.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3L7K7_9STRA2.130e-4652.02Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4MLR2_9STRA1.230e-4449.73Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2UED2_9STRA1.100e-4245.86Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3PXF5_9STRA1.670e-4247.90Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B7FYH7_PHATC5.740e-4250.00Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A448YYN6_9STRA1.460e-4147.22Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
A0A6U3XUM5_9STRA6.290e-4145.81Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2HD28_9STRA7.390e-4145.76Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6617contigP-wetherbeei_contig6617:2..690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPJ1
PFAMsadh_short,adh_short_C2
Model size546
Max annot lvl2759|Eukaryota
KEGG koko:K19877
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010033,GO:0016491,GO:0042221,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0110095,GO:0110096,GO:1901700,GO:1901701,GO:1990748
Exons2
Evalue1.67e-48
EggNOG OGsCOG1028@1|root,KOG1611@2759|Eukaryota
Descriptioncellular detoxification of aldehyde
Cds size546
COG categoryIQ
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.8012445-CDS-P-wetherbeei_contig6617:1..1051683186925.8012445-CDS-P-wetherbeei_contig6617:1..105Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6617 2..105 -
1683186925.8114042-CDS-P-wetherbeei_contig6617:248..6901683186925.8114042-CDS-P-wetherbeei_contig6617:248..690Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6617 249..690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6617.1.1prot_P-wetherbeei_contig6617.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6617 2..690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6617.1.1

>prot_P-wetherbeei_contig6617.1.1 ID=prot_P-wetherbeei_contig6617.1.1|Name=mRNA_P-wetherbeei_contig6617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
SASANPANPAVVSLQPKPAAAQRNADADAVFFVTGANRGIGLEMAKQLLG
RTQGVIVGACRSPNDATALQQLVEGNPNRVRIMQLDLTDQASITAMGDRM
ANDHGRCDLLLNVAGILGDAKTTPGPERSLSAVERDWMLYSIQVNCVGPV
MVTQALRALLHTAKTSRAPSVVANISARVGSI
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mRNA from alignment at P-wetherbeei_contig6617:2..690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6617.1.1 ID=mRNA_P-wetherbeei_contig6617.1.1|Name=mRNA_P-wetherbeei_contig6617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=689bp|location=Sequence derived from alignment at P-wetherbeei_contig6617:2..690- (Phaeothamnion wetherbeei SAG_119_79)
TCTGCATCAGCAAACCCAGCTAATCCTGCAGTTGTGAGCCTCCAACCAAA GCCGGCAGCGGCGCAGAGGAATGCCGATGCCGACGCCGTCTTCTTCGTCA CCGGCGCGAACCGCGGCATCGGCCTGGAAATGGCGAAACAGCTCCTCGGA CGGACACAGGGAGTGATCGTCGGCGCCTGCAGAAGTCCAAACGACGCGAC CGCTCTGCAGCAGCTTGTGGAGGGCAACCCAAATCGCGTGCGCATCATGC AGCTCGACTTGACAGACCAAGCGAGCATCACTGCTATGGGGGACCGCATG GCCAACGATCATGGGAGATGCGACCTGCTCTTGAACGTTGCCGGAATTCT TGGCGATGCCAAAACCACCCCCGGTCCAGAGCGAAGCTTGTCTGCGGTTG AGAGGGACTGGATGCTTTACAGCATTCAGGTTAACTGCGTTGGTAAGTTA TGTGGCTGAACAATCGCCAATTGTTTCTTTTCTATTTTGTTGCAGTTTCC ATGCCATCGGTCCGAAACAGCGACCTTCCATCCAGTGCAATACAGTCAAA CACTCTTGCTGGCCTCTTGCTCCGTCCGTCGGCAGGCCCGGTGATGGTGA CACAAGCGCTGCGCGCGCTGCTCCACACGGCAAAGACTTCTAGAGCACCT TCCGTAGTGGCCAACATCAGCGCCCGTGTCGGCAGCATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6617:2..690-

>mRNA_P-wetherbeei_contig6617.1.1 ID=mRNA_P-wetherbeei_contig6617.1.1|Name=mRNA_P-wetherbeei_contig6617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig6617:2..690- (Phaeothamnion wetherbeei SAG_119_79)
TCTGCATCAGCAAACCCAGCTAATCCTGCAGTTGTGAGCCTCCAACCAAA
GCCGGCAGCGGCGCAGAGGAATGCCGATGCCGACGCCGTCTTCTTCGTCA
CCGGCGCGAACCGCGGCATCGGCCTGGAAATGGCGAAACAGCTCCTCGGA
CGGACACAGGGAGTGATCGTCGGCGCCTGCAGAAGTCCAAACGACGCGAC
CGCTCTGCAGCAGCTTGTGGAGGGCAACCCAAATCGCGTGCGCATCATGC
AGCTCGACTTGACAGACCAAGCGAGCATCACTGCTATGGGGGACCGCATG
GCCAACGATCATGGGAGATGCGACCTGCTCTTGAACGTTGCCGGAATTCT
TGGCGATGCCAAAACCACCCCCGGTCCAGAGCGAAGCTTGTCTGCGGTTG
AGAGGGACTGGATGCTTTACAGCATTCAGGTTAACTGCGTTGGCCCGGTG
ATGGTGACACAAGCGCTGCGCGCGCTGCTCCACACGGCAAAGACTTCTAG
AGCACCTTCCGTAGTGGCCAACATCAGCGCCCGTGTCGGCAGCATT
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