mRNA_P-wetherbeei_contig6613.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6613.1.1
Unique NamemRNA_P-wetherbeei_contig6613.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6613.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6613contigP-wetherbeei_contig6613:1191..2008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size271
Hectar predicted targeting categoryother localisation
Exons3
Cds size258
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.5687296-UTR-P-wetherbeei_contig6613:1190..12011683186925.5687296-UTR-P-wetherbeei_contig6613:1190..1201Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6613 1191..1201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.5784292-CDS-P-wetherbeei_contig6613:1201..12451683186925.5784292-CDS-P-wetherbeei_contig6613:1201..1245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6613 1202..1245 +
1683186925.5876074-CDS-P-wetherbeei_contig6613:1530..15701683186925.5876074-CDS-P-wetherbeei_contig6613:1530..1570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6613 1531..1570 +
1683186925.5985758-CDS-P-wetherbeei_contig6613:1834..20081683186925.5985758-CDS-P-wetherbeei_contig6613:1834..2008Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6613 1835..2008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6613.1.1prot_P-wetherbeei_contig6613.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6613 1202..2008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6613.1.1

>prot_P-wetherbeei_contig6613.1.1 ID=prot_P-wetherbeei_contig6613.1.1|Name=mRNA_P-wetherbeei_contig6613.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MLPGQNLHRQMPHVSDLRYSAVQLRFRNAETQASFDQHAVMARIATCRIL
TTVAMPSILAAIGTGFREGDMFKVITGCANVALVLG
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mRNA from alignment at P-wetherbeei_contig6613:1191..2008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6613.1.1 ID=mRNA_P-wetherbeei_contig6613.1.1|Name=mRNA_P-wetherbeei_contig6613.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=818bp|location=Sequence derived from alignment at P-wetherbeei_contig6613:1191..2008+ (Phaeothamnion wetherbeei SAG_119_79)
TTGTCAGCCTGATGCTCCCGGGGCAGAATCTACACCGGCAGATGCCGCAC
GTCAGGCGAGGATAAAATCCACAGCGTTTTCAAGCCCTAAGCACCAACTC
GTTTGTCTGCTTTCTCGATGGGCTGCGGCGAGGCAGCCGAGAAGGGAAAG
CAACATTGTTCGGGTCGACGTGCGGCTTCTTCGCGTTGTCACGATGCGGC
TCTTCGCTCTGCTGCACAAGGATGTGGATTGCTCGCTGTTTCTGCGGGTT
GTTTCCTGTGCTTCAGCGCGGTCGCCATCCTCAACCACCAGTTGGCCTTG
CTCTCCTCTCTCTTCCTCTTTGATGACAACAAACGAACAGTGACCTGCGC
TACAGCGCCGTCCAGCTCCGCTTCCGCAACGTAAGCCGATGACTGCAACC
CCTCCCATCCCTTTAACGCTTTGCCTTTCAGCCGGTCCCCAAAGCTTCTA
CTTTCTTCTCAGTTCAGCTTCCCTGGATTCTCGTGTTTTCGTCCTGCTGG
AATCCCGGCGCAGCGATACTGCGTCGCCACGTTGCCAAGGCGGCCAGGCT
GCAAACAACAAGAGCCGTTGTCATACATTTCCCACCGTGCTCTGTCTGTT
TCCTTTTCCTGCCGACGTTCGTTCGCAACGGGCGCGCGTCGCAGGCGGAG
ACGCAGGCGTCATTCGACCAGCACGCCGTCATGGCACGCATCGCCACCTG
CCGCATCCTGACGACAGTAGCAATGCCATCGATCCTCGCCGCAATCGGGA
CGGGTTTCCGTGAGGGTGACATGTTCAAGGTCATCACCGGGTGCGCGAAC
GTCGCGCTCGTGCTCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6613:1191..2008+

>mRNA_P-wetherbeei_contig6613.1.1 ID=mRNA_P-wetherbeei_contig6613.1.1|Name=mRNA_P-wetherbeei_contig6613.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig6613:1191..2008+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCCGGGGCAGAATCTACACCGGCAGATGCCGCACGTCAGTGACCT
GCGCTACAGCGCCGTCCAGCTCCGCTTCCGCAACGCGGAGACGCAGGCGT
CATTCGACCAGCACGCCGTCATGGCACGCATCGCCACCTGCCGCATCCTG
ACGACAGTAGCAATGCCATCGATCCTCGCCGCAATCGGGACGGGTTTCCG
TGAGGGTGACATGTTCAAGGTCATCACCGGGTGCGCGAACGTCGCGCTCG
TGCTCGGG
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