mRNA_P-wetherbeei_contig6611.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6611.3.1
Unique NamemRNA_P-wetherbeei_contig6611.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6611.3.1 vs. uniprot
Match: A0A835Z9P8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.220e-26
Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:   13 VYESDLGPGEIFGESVLEGLSARRRTVIAVTRVELLAIDAADYEKIRDRGHSHVPIERKLSFLKKVPLIKHMESYRRHQMAMLLRASEIPKGKVIVSPGEISKCLYFIVSGTAEV 357
            VY SDL PG++ G+ VL+G+  R  T +AV+R  LL++D  DY ++RD G S + ++ K  FLK+VPL+K ME YR +++A+L R  E PK   IV  GE S+ L+FI SGTAEV
Sbjct:  928 VYHSDLCPGDVLGDGVLDGVRTRHHTAVAVSRATLLSVDVEDYLRVRDHGVSLLSVDDKFHFLKQVPLLKGMEMYRIYRIALLARLEEYPKDTWIVRSGEASRGLFFIYSGTAEV 1042
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BLAST of mRNA_P-wetherbeei_contig6611.3.1 vs. uniprot
Match: A0A7S0XBA2_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XBA2_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 1.350e-5
Identity = 32/119 (26.89%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:   22 SDLGPGEIFGESVLEGLSARRRTVIAVTRVELLAIDAADYEKIRDRGHSHVPIERKLSFLKKVPLIKHMESYRRHQMAMLLRASEIPKGKVIVSPGEISKCLYFIVSGTAEVQSRVLAA 378
            ++L P   FGE  L     R  T++A   + L ++    Y +I   G     ++ KL F++KVP+++ M+S+    +++  +   +P+G  I + GE S  +Y +  G   V + + AA
Sbjct:   22 AELEPRHGFGEMSLFKNEPRSATIVASEHLWLASVTKESYLRIIAGGMVKA-LQEKLDFMRKVPVLRDMDSFALRNLSLCFQHVRVPRGSQIYTQGEDSDSVYVVYKGQCCVTTAITAA 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6611.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z9P8_9STRA1.220e-2649.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0XBA2_9CHLO1.350e-526.89Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6611contigP-wetherbeei_contig6611:1928..3006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1005962.W1Q9G3
Preferred namePKAR
PFAMsRIIa,cNMP_binding
Model size393
Max annot lvl4751|Fungi
KEGG koko:K04739
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000228,GO:0000785,GO:0000790,GO:0001932,GO:0001933,GO:0002831,GO:0002832,GO:0003674,GO:0004857,GO:0004860,GO:0004862,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005886,GO:0005952,GO:0006469,GO:0006950,GO:0006979,GO:0007154,GO:0008104,GO:0008150,GO:0008277,GO:0008603,GO:0009266,GO:0009267,GO:0009405,GO:0009408,GO:0009605,GO:0009607,GO:0009628,GO:0009653,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010563,GO:0010570,GO:0010605,GO:0010639,GO:0010646,GO:0010648,GO:0016020,GO:0017076,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0019954,GO:0022603,GO:0023051,GO:0023057,GO:0030154,GO:0030234,GO:0030291,GO:0030435,GO:0030436,GO:0030447,GO:0030448,GO:0030551,GO:0030552,GO:0030554,GO:0031279,GO:0031281,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032268,GO:0032269,GO:0032386,GO:0032388,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033554,GO:0033673,GO:0034305,GO:0034599,GO:0034605,GO:0034613,GO:0036094,GO:0036170,GO:0036180,GO:0040007,GO:0040008,GO:0042173,GO:0042221,GO:0042325,GO:0042326,GO:0042594,GO:0043085,GO:0043086,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043934,GO:0043936,GO:0043937,GO:0043938,GO:0043943,GO:0043945,GO:0043949,GO:0043951,GO:0044092,GO:0044093,GO:0044182,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045744,GO:0045761,GO:0045762,GO:0045786,GO:0045859,GO:0045881,GO:0045926,GO:0045936,GO:0046578,GO:0046580,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051056,GO:0051058,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051246,GO:0051248,GO:0051338,GO:0051339,GO:0051348,GO:0051349,GO:0051445,GO:0051447,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0060258,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071496,GO:0071900,GO:0071901,GO:0071944,GO:0080090,GO:0080134,GO:0090087,GO:0090316,GO:0097159,GO:0097271,GO:0097367,GO:0098772,GO:0106070,GO:0106072,GO:0110033,GO:0110034,GO:1900428,GO:1900429,GO:1900434,GO:1900435,GO:1900443,GO:1900444,GO:1901265,GO:1901363,GO:1902531,GO:1902532,GO:1902659,GO:1902660,GO:1903664,GO:1903666,GO:1903827,GO:1903829,GO:1904951,GO:2000241,GO:2000242,GO:2000479,GO:2000480
Exons4
Evalue5.73e-10
EggNOG OGsCOG0664@1|root,KOG1113@2759|Eukaryota,38GS1@33154|Opisthokonta,3NU9Z@4751|Fungi,3QKI5@4890|Ascomycota,3RSCY@4891|Saccharomycetes
DescriptioncAMP-dependent protein kinase regulatory subunit
Cds size390
COG categoryT
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.4552503-CDS-P-wetherbeei_contig6611:1929..20281683186925.4552503-CDS-P-wetherbeei_contig6611:1929..2028Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6611 1930..2028 -
1683186925.4686236-CDS-P-wetherbeei_contig6611:2246..23301683186925.4686236-CDS-P-wetherbeei_contig6611:2246..2330Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6611 2247..2330 -
1683186925.4791658-CDS-P-wetherbeei_contig6611:2554..26541683186925.4791658-CDS-P-wetherbeei_contig6611:2554..2654Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6611 2555..2654 -
1683186925.4894888-CDS-P-wetherbeei_contig6611:2899..30061683186925.4894888-CDS-P-wetherbeei_contig6611:2899..3006Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6611 2900..3006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6611.3.1prot_P-wetherbeei_contig6611.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6611 1930..3006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6611.3.1

>prot_P-wetherbeei_contig6611.3.1 ID=prot_P-wetherbeei_contig6611.3.1|Name=mRNA_P-wetherbeei_contig6611.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
VSCFVYESDLGPGEIFGESVLEGLSARRRTVIAVTRVELLAIDAADYEKI
RDRGHSHVPIERKLSFLKKVPLIKHMESYRRHQMAMLLRASEIPKGKVIV
SPGEISKCLYFIVSGTAEVQSRVLAAARLL
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mRNA from alignment at P-wetherbeei_contig6611:1928..3006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6611.3.1 ID=mRNA_P-wetherbeei_contig6611.3.1|Name=mRNA_P-wetherbeei_contig6611.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1079bp|location=Sequence derived from alignment at P-wetherbeei_contig6611:1928..3006- (Phaeothamnion wetherbeei SAG_119_79)
GTCTCGTGCTTCGTGTATGAGTCGGACTTAGGGCCGGGAGAAATTTTTGG
AGAGAGCGTGTTGGAGGGGCTGTCGGCCCGCCGAAGAACCGTCATTGCCG
TCACCAGGTCAGTCACAAGCAAGTTTGGGCGGTTGTGGTGAGGGGGAGGA
AAAGAGTGTGAGGTGAAGAATTAAGCCAATTTTTCGCAGCGGTTCAGCTG
AAACTGCTGGTTGGCAGAGGCGGCGGCCGTTGCGGCAGGTGTGCTGCAGG
GTTGGGCCATGGCCTGGAATCTGGCAAGCTGACGGCAGCAGTAGAGGGAA
CATTCTCGTGATTTATCATGCACCCTGATTCTCACTTTGTCTTCCTCTGC
AGGGTGGAGCTACTGGCGATCGACGCGGCAGACTACGAAAAGATCCGTGA
CCGCGGCCACTCCCACGTGCCCATAGAAAGAAAGCTCAGCTTCCTCAAGA
AGGTAAGTACTGATCCTGTAGCAGCCGGACAGTTGTTGAACTGCCATGGC
CGCCCGCGACGTGATGGGCTGCGTTTCGGTCTGCCGGAAGATGTGCTGCA
GCCGATGCGACTCTTCGCCGGGATCAAGTTGCGCGTCGCCGCACCGCCAC
GCTTTTCCTTGGGAGTTGAGCCGGTTTATTGGTAGCACAATAACGCAAAC
ATACTCTATCCCATTTCGCGTCCCAGGTGCCCTTGATCAAGCACATGGAG
TCATACCGCCGGCATCAAATGGCCATGCTGCTGCGAGCTTCCGAGATCCC
CAAGGGAAAGGTCAGTTCTGAGAGAACACTTTGGGTTTCTAACGGTGCAA
TAGCCGGGGCGGCCACTGCTGCCTCTGGTACGAATTTCGGTTGGATTGAA
GGGAATCCTCGATCGCACCCCAGTGCTCTCAACATGTGGTTAGTAGTGAC
GCACGATTTGCTTCAGTTCATAAAAATACCCGTAGCTCACACACTAAACC
CGAAACTCAACGCCCTTTGTCCCATCAGGTCATTGTCAGTCCAGGCGAGA
TTTCAAAGTGCCTCTACTTTATCGTGTCAGGCACCGCCGAGGTGCAGTCG
CGGGTCCTCGCCGCCGCCCGCCTCCTCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6611:1928..3006-

>mRNA_P-wetherbeei_contig6611.3.1 ID=mRNA_P-wetherbeei_contig6611.3.1|Name=mRNA_P-wetherbeei_contig6611.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig6611:1928..3006- (Phaeothamnion wetherbeei SAG_119_79)
GTCTCGTGCTTCGTGTATGAGTCGGACTTAGGGCCGGGAGAAATTTTTGG
AGAGAGCGTGTTGGAGGGGCTGTCGGCCCGCCGAAGAACCGTCATTGCCG
TCACCAGGGTGGAGCTACTGGCGATCGACGCGGCAGACTACGAAAAGATC
CGTGACCGCGGCCACTCCCACGTGCCCATAGAAAGAAAGCTCAGCTTCCT
CAAGAAGGTGCCCTTGATCAAGCACATGGAGTCATACCGCCGGCATCAAA
TGGCCATGCTGCTGCGAGCTTCCGAGATCCCCAAGGGAAAGGTCATTGTC
AGTCCAGGCGAGATTTCAAAGTGCCTCTACTTTATCGTGTCAGGCACCGC
CGAGGTGCAGTCGCGGGTCCTCGCCGCCGCCCGCCTCCTC
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