mRNA_P-wetherbeei_contig6611.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6611.1.1
Unique NamemRNA_P-wetherbeei_contig6611.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6611.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6611contigP-wetherbeei_contig6611:2..1224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1224
Hectar predicted targeting categoryother localisation
Exons1
Cds size987
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.3841338-UTR-P-wetherbeei_contig6611:1..2371683186925.3841338-UTR-P-wetherbeei_contig6611:1..237Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6611 2..237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.394849-CDS-P-wetherbeei_contig6611:237..12241683186925.394849-CDS-P-wetherbeei_contig6611:237..1224Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6611 238..1224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6611.1.1prot_P-wetherbeei_contig6611.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6611 238..1224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6611.1.1

>prot_P-wetherbeei_contig6611.1.1 ID=prot_P-wetherbeei_contig6611.1.1|Name=mRNA_P-wetherbeei_contig6611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=329bp
ADGAGGAGNGGGEDGYGSGGDESGGGGWDLGVAAAFDDSVVWEGSNYDGI
AAAGAAGASWNGVTATPNTNLRDGGGNGGGARGVGGIFSHEGDSLLSVTD
AGRSSWDGRDPAAPFLWEEGGGAGFGSGRLGGFDGCRLLAGASIDSLDTL
SLAASVSSLQGGSGGGGGGCDRRHPFGAGLLPGLGLHDDGTASLPSLLRP
TDDVGLGGRKRSKKDEATVVPRSGGMSLQELHGRLKCGADGADAGGGRRN
CAAAGAAAATAMRLPGIIKTKGTRPRMGGGGGSSREAMRPGDKGSDGSGA
GADWAPVCGDSVVILPIKTFSKVAASLA*
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mRNA from alignment at P-wetherbeei_contig6611:2..1224-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6611.1.1 ID=mRNA_P-wetherbeei_contig6611.1.1|Name=mRNA_P-wetherbeei_contig6611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1223bp|location=Sequence derived from alignment at P-wetherbeei_contig6611:2..1224- (Phaeothamnion wetherbeei SAG_119_79)
GCCGATGGCGCCGGTGGCGCCGGCAACGGCGGCGGGGAGGATGGGTACGG
CAGCGGCGGGGATGAGAGCGGCGGCGGCGGCTGGGACTTAGGCGTTGCTG
CTGCGTTTGACGACAGCGTCGTTTGGGAAGGCAGCAACTACGACGGCATC
GCGGCGGCCGGTGCCGCAGGTGCCAGCTGGAATGGGGTAACAGCAACACC
CAACACAAACCTACGCGATGGTGGCGGCAACGGCGGCGGCGCCCGCGGCG
TGGGGGGCATCTTCTCACACGAAGGCGACAGCCTCTTGAGCGTTACCGAT
GCCGGCAGGAGCAGCTGGGACGGCCGCGATCCGGCTGCGCCATTCTTGTG
GGAAGAAGGGGGTGGCGCCGGCTTTGGCAGCGGCCGACTTGGCGGCTTTG
ACGGCTGCAGGTTGCTGGCGGGTGCCAGCATTGACTCGTTGGACACGCTG
TCCCTTGCGGCATCTGTATCATCGCTGCAGGGTGGTAGCGGCGGCGGCGG
CGGTGGCTGCGACAGACGGCACCCATTCGGCGCCGGACTGCTTCCGGGAC
TTGGCCTGCACGACGACGGGACCGCCAGCCTTCCCAGCCTCCTCCGGCCG
ACCGATGACGTTGGTCTCGGCGGACGGAAGCGCTCCAAAAAAGACGAGGC
AACTGTCGTCCCAAGGTCCGGCGGAATGAGTCTTCAAGAGCTCCACGGCC
GCCTAAAGTGTGGCGCCGATGGCGCTGACGCCGGCGGCGGCAGACGAAAC
TGCGCGGCGGCAGGTGCTGCGGCGGCGACCGCGATGCGGCTGCCAGGAAT
CATCAAGACAAAAGGCACCAGGCCAAGAATGGGAGGTGGCGGCGGCAGCA
GCCGTGAGGCGATGCGTCCGGGTGATAAGGGCTCTGATGGCAGCGGCGCC
GGCGCAGATTGGGCGCCGGTCTGCGGAGATTCGGTGGTCATTCTTCCGAT
CAAGACATTTAGCAAGGTAGCAGCCTCTTTGGCGTAAGGGTAAAAGACGT
TACAGTGGCGCTACGCCTGCGGGTTTCGGCTACACCGGGTGGCTGTGGCA
CCACGCTGCAAAAGGCCTGTCCACAGCCACTGGCTTTTTTTAGATTTGAA
TTGTGAAGATAACGAACGACATCTGTCGGCGTTTTGTTGTGAACCAAAAC
ATTCTGACAGCCAGAGCGGGATGAAACATATTAAACAGGCCCAAGGAGTC
GAAGGACATCAACTTGGGTGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6611:2..1224-

>mRNA_P-wetherbeei_contig6611.1.1 ID=mRNA_P-wetherbeei_contig6611.1.1|Name=mRNA_P-wetherbeei_contig6611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=987bp|location=Sequence derived from alignment at P-wetherbeei_contig6611:2..1224- (Phaeothamnion wetherbeei SAG_119_79)
GCCGATGGCGCCGGTGGCGCCGGCAACGGCGGCGGGGAGGATGGGTACGG
CAGCGGCGGGGATGAGAGCGGCGGCGGCGGCTGGGACTTAGGCGTTGCTG
CTGCGTTTGACGACAGCGTCGTTTGGGAAGGCAGCAACTACGACGGCATC
GCGGCGGCCGGTGCCGCAGGTGCCAGCTGGAATGGGGTAACAGCAACACC
CAACACAAACCTACGCGATGGTGGCGGCAACGGCGGCGGCGCCCGCGGCG
TGGGGGGCATCTTCTCACACGAAGGCGACAGCCTCTTGAGCGTTACCGAT
GCCGGCAGGAGCAGCTGGGACGGCCGCGATCCGGCTGCGCCATTCTTGTG
GGAAGAAGGGGGTGGCGCCGGCTTTGGCAGCGGCCGACTTGGCGGCTTTG
ACGGCTGCAGGTTGCTGGCGGGTGCCAGCATTGACTCGTTGGACACGCTG
TCCCTTGCGGCATCTGTATCATCGCTGCAGGGTGGTAGCGGCGGCGGCGG
CGGTGGCTGCGACAGACGGCACCCATTCGGCGCCGGACTGCTTCCGGGAC
TTGGCCTGCACGACGACGGGACCGCCAGCCTTCCCAGCCTCCTCCGGCCG
ACCGATGACGTTGGTCTCGGCGGACGGAAGCGCTCCAAAAAAGACGAGGC
AACTGTCGTCCCAAGGTCCGGCGGAATGAGTCTTCAAGAGCTCCACGGCC
GCCTAAAGTGTGGCGCCGATGGCGCTGACGCCGGCGGCGGCAGACGAAAC
TGCGCGGCGGCAGGTGCTGCGGCGGCGACCGCGATGCGGCTGCCAGGAAT
CATCAAGACAAAAGGCACCAGGCCAAGAATGGGAGGTGGCGGCGGCAGCA
GCCGTGAGGCGATGCGTCCGGGTGATAAGGGCTCTGATGGCAGCGGCGCC
GGCGCAGATTGGGCGCCGGTCTGCGGAGATTCGGTGGTCATTCTTCCGAT
CAAGACATTTAGCAAGGTAGCAGCCTCTTTGGCGTAA
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