mRNA_P-wetherbeei_contig6604.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6604.1.1
Unique NamemRNA_P-wetherbeei_contig6604.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Match: A0A2D4CBX1_PYTIN (ATP-dependent DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBX1_PYTIN)

HSP 1 Score: 280 bits (716), Expect = 4.740e-83
Identity = 139/251 (55.38%), Postives = 177/251 (70.52%), Query Frame = 1
Query:  277 CISQWGHDFRPDYSKLGWCKKTFPDVPVLAVTATATGKVVGDVVRSLGMRNHKSVNQGIDRPYLYFEVREKPKSGMDQMTAVAEYVKSK--AGATGIVYCMTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVATIAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRREDISKLQNIIRISGKGGRA-TKERHGELLEEMRAYCEQTDQCRKVFLEVYFG 1020
            C+SQWGHDFRPDYSKLG  K  FPDVP++A+TATA  KV+  V RSL +RN K  +   +RP L FEVREKP      + A+ + + ++    A GIVYCMTK + E +A YL  +GVRADFYHAGQ+ G RQ VQ +WQ+G+I VV ATIAYGMGI+K+DVRYV+H+S+ KS+ GYYQEAGRAGRDG P++C+L Y   DISK+++I+ +  KG  A  +  H E L +M  YCE    CR+  L  YFG
Sbjct:  312 CVSQWGHDFRPDYSKLGLLKDEFPDVPLMALTATAPPKVIQGVQRSLKIRNAKIFSMSFNRPNLSFEVREKPLQEAKALEALHQVISTEFQESAVGIVYCMTKQECEDVANYLFDRGVRADFYHAGQSNGDRQLVQEAWQQGQISVVCATIAYGMGINKADVRYVIHYSVAKSMEGYYQEAGRAGRDGLPSKCILFYSSRDISKMRSILYMPQKGMTAKARAVHIEKLRDMAEYCEDETSCRRKLLVTYFG 562          
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Match: A0A425CKQ2_9STRA (ATP-dependent DNA helicase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CKQ2_9STRA)

HSP 1 Score: 270 bits (689), Expect = 1.020e-79
Identity = 135/252 (53.57%), Postives = 174/252 (69.05%), Query Frame = 1
Query:  277 CISQWGHDFRPDYSKLGWCKKTFPDVPVLAVTATATGKVVGDVVRSLGMRNHKSVNQGIDRPYLYFEVREKPK-SGMDQMTAVAEYVKS--KAGATGIVYCMTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVATIAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRREDISKLQNIIRISGKG-GRATKERHGELLEEMRAYCEQTDQCRKVFLEVYFG 1020
            C+SQWGHDFRP+YS+LG  KKTFPDVP++A+TATA  KV+ D+ RSL +      +   +R  L FEVREKP+ S    M A+ +++ +     A GIVYCMTK D+E +A YL  +G+ ADFYHAGQ+   R  VQ +WQ G++ +V ATIAYGMGI+K DVRYV+HFS+ KSI GYYQEAGRAGRDGKP+ C++ Y   D+SKL++I+ +  KG  R T+  H E L  M  YCE    CR+  L  YFG
Sbjct:  269 CVSQWGHDFRPEYSQLGLLKKTFPDVPLMALTATAPPKVIKDIQRSLRISKGLVFSMSFNRQNLTFEVREKPRGSDKTAMEALYQFISTTYSQDAVGIVYCMTKQDSEDVANYLFDRGLSADFYHAGQSATDRHMVQEAWQNGQLSIVCATIAYGMGINKPDVRYVIHFSVAKSIEGYYQEAGRAGRDGKPSHCIMFYSPRDVSKLRSILFMPQKGMTRKTRAVHMEKLRTMAEYCEDDATCRRQLLISYFG 520          
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Match: G4Z2Z7_PHYSP (ATP-dependent DNA helicase n=2 Tax=Phytophthora TaxID=4783 RepID=G4Z2Z7_PHYSP)

HSP 1 Score: 264 bits (675), Expect = 2.010e-79
Identity = 134/252 (53.17%), Postives = 173/252 (68.65%), Query Frame = 1
Query:  277 CISQWGHDFRPDYSKLGWCKKTFPDVPVLAVTATATGKVVGDVVRSLGMRNHKSVNQGIDRPYLYFEVREKPK-SGMDQMTAVAEYVKSK--AGATGIVYCMTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVATIAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRREDISKLQNIIRISGKG-GRATKERHGELLEEMRAYCEQTDQCRKVFLEVYFG 1020
            C+SQWGHDFRP+YS+LG  KKTFP+VP++A+TATA  KV+  V RSL + N    +   +R  L FEVR+KP  S +  M A+ E +       A GIVYCMTK D+E +A YL  +G+ ADFYHAGQ+   R  VQ +WQ G++ +V ATIAYGMGI+K DVRYV+HFS+ KSI GYYQEAGRAGRDGKP++C++ Y   DISK+++I+ +  KG  + T+  H E L  M  YCE    CR+  L  YFG
Sbjct:  123 CVSQWGHDFRPEYSQLGMLKKTFPNVPLMALTATAPPKVIQGVQRSLKISNGPVFSMSFNRQNLTFEVRDKPLGSDVKAMEALYELISKTYPRDAVGIVYCMTKQDSEDVANYLFDRGLSADFYHAGQSATDRHMVQEAWQNGQLSIVCATIAYGMGINKPDVRYVIHFSVAKSIEGYYQEAGRAGRDGKPSQCIIFYSARDISKMRSILFMPQKGMTKQTRAVHMEKLRAMAEYCEDDTTCRRQQLISYFG 374          
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Match: A0A0W8D3S3_PHYNI (ATP-dependent DNA helicase n=13 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D3S3_PHYNI)

HSP 1 Score: 266 bits (680), Expect = 1.530e-78
Identity = 132/252 (52.38%), Postives = 174/252 (69.05%), Query Frame = 1
Query:  277 CISQWGHDFRPDYSKLGWCKKTFPDVPVLAVTATATGKVVGDVVRSLGMRNHKSVNQGIDRPYLYFEVREKPKSGMDQ-MTAVAEYVKSKAG--ATGIVYCMTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVATIAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRREDISKLQNIIRISGKG-GRATKERHGELLEEMRAYCEQTDQCRKVFLEVYFG 1020
            C+SQWGHDFRP+Y++LG  KKTFP VP++A+TATA  KV+  V +SL + N    +   +R  L FEVR+KP+ G  + M A+ +++ +     A GIVYCMTK D E +A YL   G+ ADFYHAGQ+   R  VQ +WQ G++ +V ATIAYGMGI+K DVRYV+HFS+ KSI GYYQEAGRAGRDGKP++C+L Y   D+SK++NI+ +  KG  + T+  H E L+ M  YCE    CR+  L  YFG
Sbjct:  259 CVSQWGHDFRPEYNQLGILKKTFPTVPLMALTATAPPKVIDHVKKSLMISNGHVFSMSFNRQNLTFEVRDKPRGGDKKAMEALYQHISTTYAPDAVGIVYCMTKQDCEDVANYLFDHGLSADFYHAGQSATDRHMVQEAWQNGQLSIVCATIAYGMGINKPDVRYVIHFSVAKSIEGYYQEAGRAGRDGKPSQCILFYSPRDVSKMRNILSMPQKGMTKKTRAVHMEKLKSMAEYCEDDTTCRRQLLISYFG 510          
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Match: A0A485KUN2_9STRA (ATP-dependent DNA helicase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUN2_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.540e-78
Identity = 130/252 (51.59%), Postives = 170/252 (67.46%), Query Frame = 1
Query:  277 CISQWGHDFRPDYSKLGWCKKTFPDVPVLAVTATATGKVVGDVVRSLGMRNHKSVNQGIDRPYLYFEVREKPKSGMDQMTAVAEYVKSKAG--ATGIVYCMTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVATIAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRREDISKLQNIIRISGKGGRATKER--HGELLEEMRAYCEQTDQCRKVFLEVYFG 1020
            C++QWGHDFRPDY KLG  K+ FPDVP++A+TATA  KVV  V + L        +   +R  L F+V EK       +  +  Y+ SK      GIVYCMTK  +E +A YL  +G++ADFYHAGQ++  R+ VQ +WQ+G++ VV ATIAYGMGIDK+DVRYV+H+S+ KSI GYYQEAGRAGRDG+P++C + Y R D+SK++ II +  KG    K R  H E LE+M  YCE T  CR+ +L  YFG
Sbjct:  164 CVTQWGHDFRPDYHKLGKLKELFPDVPLMALTATAPQKVVDSVKKILKTPRATIYSMSFNRGNLSFDVVEKEHEEAKSLAQLHSYIASKYANNVVGIVYCMTKQQSEDVANYLFDRGIQADFYHAGQSSTDREMVQEAWQDGQVKVVCATIAYGMGIDKADVRYVIHYSVAKSIEGYYQEAGRAGRDGQPSQCTIFYNRRDVSKIRGIINMPKKGN-TMKSRGVHMEKLEKMMEYCEDTSSCRRQYLVSYFG 414          
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Match: A0A6G0XAI7_9STRA (ATP-dependent DNA helicase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAI7_9STRA)

HSP 1 Score: 263 bits (671), Expect = 2.160e-78
Identity = 129/251 (51.39%), Postives = 167/251 (66.53%), Query Frame = 1
Query:  277 CISQWGHDFRPDYSKLGWCKKTFPDVPVLAVTATATGKVVGDVVRSLGMRNHKSVNQGIDRPYLYFEVREKPKSGMDQMTAVAEYVKSKAG--ATGIVYCMTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVATIAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRREDISKLQNIIRISGKGGRA-TKERHGELLEEMRAYCEQTDQCRKVFLEVYFG 1020
            C++QWGHDFRPDY+KLG  K+ FPDVPV+A+TATA  KV+  V + L +      +   +R  L F V EK       +  +  Y+ S       GIVYCMTK  +E +A YL  +G++ADFYHAGQ++  R+ VQ +WQ+G++ VV ATIAYGMGIDK DVRYVLHFS+ KSI GYYQEAGRAGRDG+P++C + Y R D+SK++ II +  KG    T+  H E LE M  YCE    CR+ +L  YFG
Sbjct:  164 CVTQWGHDFRPDYNKLGRLKELFPDVPVMALTATAPQKVIDSVKKILKIPRATIFSMSFNRSNLSFSVIEKESEEPKALAQLYSYISSNYSNNVVGIVYCMTKQQSEDVANYLFDRGIQADFYHAGQSSTDREMVQEAWQDGQVKVVCATIAYGMGIDKPDVRYVLHFSVAKSIEGYYQEAGRAGRDGQPSQCTIFYNRRDVSKIRGIINMPRKGNTMKTRGVHMEKLERMMEYCEDAGSCRRQYLVSYFG 414          
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Match: A0A2D4CC22_PYTIN (DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC22_PYTIN)

HSP 1 Score: 280 bits (715), Expect = 3.130e-78
Identity = 139/251 (55.38%), Postives = 177/251 (70.52%), Query Frame = 1
Query:  277 CISQWGHDFRPDYSKLGWCKKTFPDVPVLAVTATATGKVVGDVVRSLGMRNHKSVNQGIDRPYLYFEVREKPKSGMDQMTAVAEYVKSK--AGATGIVYCMTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVATIAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRREDISKLQNIIRISGKGGRA-TKERHGELLEEMRAYCEQTDQCRKVFLEVYFG 1020
            C+SQWGHDFRPDYSKLG  K  FPDVP++A+TATA  KV+  V RSL +RN K  +   +RP L FEVREKP      + A+ + + ++    A GIVYCMTK + E +A YL  +GVRADFYHAGQ+ G RQ VQ +WQ+G+I VV ATIAYGMGI+K+DVRYV+H+S+ KS+ GYYQEAGRAGRDG P++C+L Y   DISK+++I+ +  KG  A  +  H E L +M  YCE    CR+  L  YFG
Sbjct: 2103 CVSQWGHDFRPDYSKLGLLKDEFPDVPLMALTATAPPKVIQGVQRSLKIRNAKIFSMSFNRPNLSFEVREKPLQEAKALEALHQVIXTEFQESAVGIVYCMTKQECEDVANYLFDRGVRADFYHAGQSNGDRQLVQEAWQQGQISVVCATIAYGMGINKADVRYVIHYSVAKSMEGYYQEAGRAGRDGLPSKCILFYSSRDISKMRSILYMPQKGMTAKARAVHIEKLRDMAEYCEDETSCRRKLLVTYFG 2353          
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Match: A0A3R7JQM2_9STRA (ATP-dependent DNA helicase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JQM2_9STRA)

HSP 1 Score: 262 bits (670), Expect = 8.000e-78
Identity = 131/251 (52.19%), Postives = 171/251 (68.13%), Query Frame = 1
Query:  277 CISQWGHDFRPDYSKLGWCKKTFPDVPVLAVTATATGKVVGDVVRSLGMRNHKSVNQGIDRPYLYFEVREKPKSGMDQMTAVAEYVKSK--AGATGIVYCMTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVATIAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRREDISKLQNIIRISGKG-GRATKERHGELLEEMRAYCEQTDQCRKVFLEVYFG 1020
            C+SQWGHDFRP+YS++G  KKTFPDVPV+A+TATA  KV+  V RSL +      +   +R  L FEVR+KP+     M  + + + +     A GIVYCMTK ++E +A YL  + + ADFYHAGQ+   R  VQ +WQ G++ +V ATIAYGMGI+K DVRYV+HFS+ KSI GYYQEAGRAGRDGKP++C+L Y   DISK++NI+ +  KG  + T+  H E L+ M  YCE    CR+  L  YFG
Sbjct:  193 CVSQWGHDFRPEYSQMGILKKTFPDVPVMALTATAPPKVIKGVQRSLHITKGSVFSMSFNRQNLSFEVRDKPRGDKKAMEELYKLISTTFPPDAVGIVYCMTKQESEDVANYLFDRELSADFYHAGQSGTNRHMVQEAWQTGQLSIVCATIAYGMGINKPDVRYVIHFSVAKSIEGYYQEAGRAGRDGKPSQCILFYSPRDISKMRNILNMPTKGMTKKTRAVHMEKLKAMGEYCEDETTCRRQQLISYFG 443          
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Match: H3GQI3_PHYRM (ATP-dependent DNA helicase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQI3_PHYRM)

HSP 1 Score: 263 bits (673), Expect = 1.370e-77
Identity = 132/252 (52.38%), Postives = 170/252 (67.46%), Query Frame = 1
Query:  277 CISQWGHDFRPDYSKLGWCKKTFPDVPVLAVTATATGKVVGDVVRSLGMRNHKSVNQGIDRPYLYFEVREKPK-SGMDQMTAVAEYVKSK--AGATGIVYCMTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVATIAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRREDISKLQNIIRISGKG-GRATKERHGELLEEMRAYCEQTDQCRKVFLEVYFG 1020
            C+SQWGHDFRP+YS+LG  KKTFP VPV+A+TATA  KV+  V RSL +      +   +R  L FEVR+KP  S    M A+ + + +     A GIVYCMTK D E +A YL  +G+ ADFYHAGQ+   R  VQ +WQ G++ +V ATIAYGMGIDK DVRYV+HFS+ KSI GYYQEAGRAGRDGKP++C++ Y   DIS++++I+R+  KG  +  +  H E L  +  YCE    CR+  L  YFG
Sbjct:  252 CVSQWGHDFRPEYSQLGLLKKTFPKVPVMALTATAPPKVIEGVQRSLRISKGHVFSMSFNRTNLTFEVRDKPLGSNAKAMEALFQLISTTYPRNAVGIVYCMTKQDCEDVANYLFDRGLSADFYHAGQSATDRHMVQDAWQNGQLSIVCATIAYGMGIDKPDVRYVIHFSVAKSIEGYYQEAGRAGRDGKPSQCIIFYSPRDISRMRSILRMPQKGMNKQARASHMEKLRSVAEYCEDDTTCRRQLLISYFG 503          
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Match: A0A6A3SMB9_9STRA (ATP-dependent DNA helicase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SMB9_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.480e-77
Identity = 134/252 (53.17%), Postives = 173/252 (68.65%), Query Frame = 1
Query:  277 CISQWGHDFRPDYSKLGWCKKTFPDVPVLAVTATATGKVVGDVVRSLGMRNHKSVNQGIDRPYLYFEVREKPK-SGMDQMTAVAEYVKSK--AGATGIVYCMTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVATIAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRREDISKLQNIIRISGKG-GRATKERHGELLEEMRAYCEQTDQCRKVFLEVYFG 1020
            C+SQWGHDFRP+YS+LG  KKT+PDVP++A+TATA  KV+  V RSL + N    +   +R  L FEVR+KP  S +  + A+ E +       A GIVYCMTK D+E +A YL  +G+ ADFYHAGQ+   R  VQ +WQ G++ +V ATIAYGMGI+K DVRYV+HFS+ KSI GYYQEAGRAGRDGKP++CV+ Y   DISK+++I+ +  KG  + T+  H E L  M  YCE    CR+  L  YFG
Sbjct:  282 CVSQWGHDFRPEYSQLGMLKKTYPDVPLMALTATAPPKVIQGVQRSLRISNGPVFSMSFNRQNLTFEVRDKPLGSDVKALEALYELISKTYPRDAVGIVYCMTKQDSEDVANYLFDRGLSADFYHAGQSATDRHMVQEAWQNGQLSIVCATIAYGMGINKPDVRYVIHFSVAKSIEGYYQEAGRAGRDGKPSQCVIFYSARDISKMRSILFMPQKGMTKQTRAVHMEKLRAMAEYCEDDTTCRRQQLISYFG 533          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6604.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4CBX1_PYTIN4.740e-8355.38ATP-dependent DNA helicase n=1 Tax=Pythium insidio... [more]
A0A425CKQ2_9STRA1.020e-7953.57ATP-dependent DNA helicase n=1 Tax=Peronospora eff... [more]
G4Z2Z7_PHYSP2.010e-7953.17ATP-dependent DNA helicase n=2 Tax=Phytophthora Ta... [more]
A0A0W8D3S3_PHYNI1.530e-7852.38ATP-dependent DNA helicase n=13 Tax=Phytophthora T... [more]
A0A485KUN2_9STRA1.540e-7851.59ATP-dependent DNA helicase n=1 Tax=Aphanomyces ste... [more]
A0A6G0XAI7_9STRA2.160e-7851.39ATP-dependent DNA helicase n=1 Tax=Aphanomyces eut... [more]
A0A2D4CC22_PYTIN3.130e-7855.38DNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]
A0A3R7JQM2_9STRA8.000e-7852.19ATP-dependent DNA helicase n=3 Tax=Phytophthora ke... [more]
H3GQI3_PHYRM1.370e-7752.38ATP-dependent DNA helicase n=1 Tax=Phytophthora ra... [more]
A0A6A3SMB9_9STRA1.480e-7753.17ATP-dependent DNA helicase n=4 Tax=Phytophthora Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6604contigP-wetherbeei_contig6604:2..3290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000013626
PFAMsDEAD,Helicase_C,RecQ_Zn_bind
Model size1689
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons6
Evalue3.45e-58
EggNOG OGsCOG0514@1|root,KOG0351@2759|Eukaryota,1MFQW@121069|Pythiales
DescriptionBloom syndrome protein, DEAD DEAH box helicase. Source PGD
Cds size960
COG categoryL
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6604.1.1prot_P-wetherbeei_contig6604.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6604 422..2981 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.044565-UTR-P-wetherbeei_contig6604:1..4211683186925.044565-UTR-P-wetherbeei_contig6604:1..421Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6604 2..421 +
1683186925.115895-UTR-P-wetherbeei_contig6604:2981..32901683186925.115895-UTR-P-wetherbeei_contig6604:2981..3290Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6604 2982..3290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.063503-CDS-P-wetherbeei_contig6604:421..4781683186925.063503-CDS-P-wetherbeei_contig6604:421..478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6604 422..478 +
1683186925.0712376-CDS-P-wetherbeei_contig6604:777..8721683186925.0712376-CDS-P-wetherbeei_contig6604:777..872Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6604 778..872 +
1683186925.0792413-CDS-P-wetherbeei_contig6604:1310..14101683186925.0792413-CDS-P-wetherbeei_contig6604:1310..1410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6604 1311..1410 +
1683186925.08761-CDS-P-wetherbeei_contig6604:1719..17831683186925.08761-CDS-P-wetherbeei_contig6604:1719..1783Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6604 1720..1783 +
1683186925.0965853-CDS-P-wetherbeei_contig6604:2057..21281683186925.0965853-CDS-P-wetherbeei_contig6604:2057..2128Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6604 2058..2128 +
1683186925.1059897-CDS-P-wetherbeei_contig6604:2408..29811683186925.1059897-CDS-P-wetherbeei_contig6604:2408..2981Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6604 2409..2981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6604.1.1

>prot_P-wetherbeei_contig6604.1.1 ID=prot_P-wetherbeei_contig6604.1.1|Name=mRNA_P-wetherbeei_contig6604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
MRNHKSVNQGIDRPYLYFEVREKPKSGMDQMTAVAEYVKSKAGATGIVYC
MTKTDTEQIALYLISQGVRADFYHAGQTTGQRQQVQTSWQEGEIDVVVAT
IAYGMGIDKSDVRYVLHFSIPKSIAGYYQEAGRAGRDGKPAECVLMYRRE
DISKLQNIIRISGKGGRATKERHGELLEEMRAYCEQTDQCRKVFLEVYFG
SGGLRGSGSGGRGGGGGGCGVHGGGADGGYGSAARTGTRCCVTQCDVCCN
AAQGPWDDEDSGDGGGGGGFGGAAAVTAVAAAAAPAPPGRQKTAFVRASE
LPRYSTGGILSAFSFVKNR*
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mRNA from alignment at P-wetherbeei_contig6604:2..3290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6604.1.1 ID=mRNA_P-wetherbeei_contig6604.1.1|Name=mRNA_P-wetherbeei_contig6604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3289bp|location=Sequence derived from alignment at P-wetherbeei_contig6604:2..3290+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATCTGTAATGGTTTTGGAGGGTTTCCGTAGTTTTCTCTTCTGCCACT TGTTTCCCTTTGTGTTTTCCGTCTCTTCTCTTTGTGTGGAGCCTTGAGGC GGCTTTCCGATCTCATCATTTTGCTTGAACCATTGACAAGCTGTTCGCTC CAGTTCTCTTCCGCACACCGTCCACGGCCGGCGTCCGACCCGCCGTTGCC GCCGCTGCCTGCCTCTTCCTCCAGACCGCCCGCTCATCTCACGGCCGCGC CGTCGCCTTTCCCCGTCTGACACAGCTGCATCTCACAGTGGGGCCATGAT TTCCGGCCGGATTACTCCAAGCTGGGGTGGTGCAAAAAGACGTTTCCGGA CGTGCCCGTCCTGGCGGTGACGGCCACCGCTACTGGCAAGGTGGTGGGCG ACGTGGTGCGCTCGCTTGGCATGCGCAACCACAAGTCCGTGAACCAGGGC ATTGACCGACCCTACCTCTATTTCGAGGTCCGTTCCGTTCCGTTTCGTCT CTCTTTCCCACCTTGGGAGGCTTAAGGGACGGATCAGTACAGCCACCTGG AGCCGTTGGTTTGTATTGCCTGGGTGCATCGTGAACCGGGTGTTTGTTGG GAGGGGTTGAGGGAGACGAGCGCGGTTATTCGAAAGGTTTGGGGAGATTT TCTTCCTCTCTGTTTTTAAAGCCCCTTCTGAAACTAAGCTGGGAAGTTGC CAGCCACCTTCCGCTCCAAATGTTTTCCTGCGGCGTGCCTTTGAGACGGT TCCATCCTCACTGTACGGTGACGTAGGTACGGGAGAAGCCGAAGAGCGGG ATGGACCAAATGACCGCCGTGGCCGAGTACGTCAAGAGCAAGGCCGGCGC CACGGGCATCGTCTACTGCATGTGGGTCTCGATTTTCTTGGATTCTCAAC AATTTACTCTTCCGATTTTGTTCGGGCTTTCTGTTCCTTTTTCCGGTCTT TTAATCCAAAGTGCAGATTTGAGCTCATCGGAATTAACATCGCGCGCACC CGCGTCCCGTCAATATGATGTTTTCTTGCAGCAGACCTTCTATCCGCTTT TTGATGGATGGAGCATTTAGCAAGACGCCTGCATATTTGCTGCGTGGGTC GCGGCCGCTTGCTCTTGTCTTAGTACCGCCACATCATCTGCTGCCGCTGC CACTGCGGCCACTACCATTGCTGCTGCCACTTCTCCGCGGCCGCCTCGCC AAGTCCGTCTCCAGCGCCGCTGCCGCCACCGCTGCTGCCGCCGCCGCCGC GCTCACGTACGCACATTCTCCGCTGCCTCTTTGCCCGCTGCATGTCTCTT CTGGCGCAGGACGAAGACCGACACGGAGCAGATTGCCTTGTACCTTATCA GCCAGGGCGTGCGGGCTGACTTTTACCACGCCGGGCAGACCACGGGCCAG CGGCAGCAGGTGCGGACGCGGTATGACTGGCGGCCTGGCTGGCTGGCTGG CTGGCTAAACGAGGCGGGTCTTGCTTTGTCGGGACTGCTTAATGTTTCAT TTGGCTTCAGCTTCGTTAGTGGATATAGGTAGAATGCCGCAGCATGGCAG GATAAAGGCTCCGAAGCTCTTAGGTTCATGTATCACCCCTGGCGCTCTTT CTGTTCTCGTGGCCGAATTCGATGGTTGCACGTCGTTGTCGCTGCTACTC CCTCTGTCCGCCGCCTGAACGGCCTACTAAATACATCCCTGTCTCTCCTT TTTCTCTGAATTGCGCAGGTGCAGACGTCGTGGCAGGAGGGGGAGATTGA CGTCGTCGTGGCGACCATCGCCTACGGCATGGGTGAGTCTCTTTTTTGGG GGGTGGGGTTTCCCTCTCTCGTGTGTGAGCCTGTTTTGGGGACTGTGTGC CTACACTCAAAGGGATTCAGGCGGCAGCTGCCGTTGCTTTTGAGGGGCAG GGACAGAGATTTTGACGCCTTTTGGGTGCCGTGGGGAAATAAACATGCAT ACTGTAGATTTTGTTTCGTCCGCTGCTCCTTTGGCCACCGATAAGTCCGC TCCTTCGCAACTTGCGCCAGCTTCCTTTTTCTCGCTGTTTCCCGGCCTTC CTTCAGGCATCGACAAGAGCGACGTGCGCTACGTGCTGCACTTTTCTATC CCCAAGAGCATTGCGGGTTACTACCAGGTAAGGTGGCGTCGCATCGTCCC AGGAACATTGTATTGCAGCTCTCGGAGCCCCGGCACCCGCCCTTTGTTGC AGTGAAGCGAAGGCTTAGATGGCGTTCCTGCCCGCCTCCCGTCACCCCCT TGCCGACTCGGGCGCGTTCTCACGAACCTCCAATTGCTGCCTCCTTCCCT TTTGCTCGACCGAGTTTTGCTCTCTATCGCCATCCTTTCCACCCGGCTAA CCGGCCCTGCCATTCTTCTTCCAAAGTAATGCGACGCCGCGCCAAATGCC GAGGCAGGAGGCCGGGCGAGCCGGGCGGGATGGAAAGCCGGCCGAGTGCG TCCTGATGTACCGCCGCGAGGACATCTCCAAGCTACAGAACATCATCCGG ATAAGCGGCAAGGGCGGACGGGCAACCAAGGAGCGCCACGGCGAGCTGTT GGAAGAAATGCGCGCCTACTGCGAACAGACCGACCAGTGCCGCAAGGTTT TTCTGGAGGTGTACTTCGGCAGCGGCGGCCTTCGCGGCAGCGGCAGCGGC GGCCGCGGCGGTGGCGGCGGCGGTTGCGGCGTCCATGGCGGCGGTGCCGA CGGCGGCTACGGCAGTGCGGCGCGGACGGGAACGCGCTGCTGCGTCACCC AGTGCGACGTTTGCTGCAACGCCGCGCAGGGACCGTGGGATGACGAGGAC AGCGGTGACGGCGGCGGCGGCGGTGGTTTCGGCGGTGCGGCGGCGGTGAC GGCGGTGGCGGCGGCGGCGGCTCCAGCGCCGCCGGGGCGGCAAAAGACTG CGTTCGTGCGGGCATCGGAGTTGCCGCGGTATTCCACCGGCGGCATCCTC TCCGCCTTCTCCTTTGTCAAAAATCGTTGACGACGGGGCGGTCGTGGTTC GTAGGAATGCTATACATTATTGTGTTTCACCAACCACCTCCTGGCCTGCT GTCCGCAGCACTTCGACTACCGCCGCAGCATCCGCCCGAACAAATAATTC CCTTTCTTTATTAGCAGATAGCGGAGCGTCGCCTGGAAGACATGGAGGGG AAAGAGGCAATAATCCACAAAAACCACCAGAGGGAACGAGCGGCACGATG CCTTTCTTTCGCTTCCTCCCAAGTCAATGAAGCGTTTGTTTTGAAGAGCC AGAGCCCGAGGCTTTCGCTAGCGGTTATGCAACAGGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6604:2..3290+

>mRNA_P-wetherbeei_contig6604.1.1 ID=mRNA_P-wetherbeei_contig6604.1.1|Name=mRNA_P-wetherbeei_contig6604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig6604:2..3290+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAACCACAAGTCCGTGAACCAGGGCATTGACCGACCCTACCTCTA
TTTCGAGGTACGGGAGAAGCCGAAGAGCGGGATGGACCAAATGACCGCCG
TGGCCGAGTACGTCAAGAGCAAGGCCGGCGCCACGGGCATCGTCTACTGC
ATGACGAAGACCGACACGGAGCAGATTGCCTTGTACCTTATCAGCCAGGG
CGTGCGGGCTGACTTTTACCACGCCGGGCAGACCACGGGCCAGCGGCAGC
AGGTGCAGACGTCGTGGCAGGAGGGGGAGATTGACGTCGTCGTGGCGACC
ATCGCCTACGGCATGGGCATCGACAAGAGCGACGTGCGCTACGTGCTGCA
CTTTTCTATCCCCAAGAGCATTGCGGGTTACTACCAGGAGGCCGGGCGAG
CCGGGCGGGATGGAAAGCCGGCCGAGTGCGTCCTGATGTACCGCCGCGAG
GACATCTCCAAGCTACAGAACATCATCCGGATAAGCGGCAAGGGCGGACG
GGCAACCAAGGAGCGCCACGGCGAGCTGTTGGAAGAAATGCGCGCCTACT
GCGAACAGACCGACCAGTGCCGCAAGGTTTTTCTGGAGGTGTACTTCGGC
AGCGGCGGCCTTCGCGGCAGCGGCAGCGGCGGCCGCGGCGGTGGCGGCGG
CGGTTGCGGCGTCCATGGCGGCGGTGCCGACGGCGGCTACGGCAGTGCGG
CGCGGACGGGAACGCGCTGCTGCGTCACCCAGTGCGACGTTTGCTGCAAC
GCCGCGCAGGGACCGTGGGATGACGAGGACAGCGGTGACGGCGGCGGCGG
CGGTGGTTTCGGCGGTGCGGCGGCGGTGACGGCGGTGGCGGCGGCGGCGG
CTCCAGCGCCGCCGGGGCGGCAAAAGACTGCGTTCGTGCGGGCATCGGAG
TTGCCGCGGTATTCCACCGGCGGCATCCTCTCCGCCTTCTCCTTTGTCAA
AAATCGTTGA
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