mRNA_P-wetherbeei_contig6602.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6602.3.1
Unique NamemRNA_P-wetherbeei_contig6602.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Match: A0A3C0TYG0_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYG0_9PROT)

HSP 1 Score: 240 bits (612), Expect = 2.470e-78
Identity = 115/172 (66.86%), Postives = 135/172 (78.49%), Query Frame = 1
Query:    1 VFTAQATITSVLFGSNPVVQFASADGGAMVTEVGMVWAPGISTSSAIASSGSEGLLNPIAAATYKLNADLKGPTNYATPFSWGAQGIFNMTYNRVFGSPVNLVPQIAWRWDLGGRTPSPLGNYMAERKAIGLSLAANYQSRWTGSVSWTANFGPDAPLDDRDFASINIAYAF 516
            VFTAQ T TS+LF SNP+VQFASAD GA+VTEVGMV  PGISTSS IA   ++GL N +AA T  LN DL+  + YAT FSWGAQG+ ++TYNR FGSP+NL P IAW+WDLGG TP P GNY AERKAI L +   Y + W GS++WT+NFGPDAPLDDRDFAS+ I+YAF
Sbjct:   19 VFTAQTTFTSLLFASNPMVQFASADSGALVTEVGMVLVPGISTSSGIAGGNTKGLANSLAAQTAALNPDLELASGYATKFSWGAQGLMSLTYNRAFGSPINLTPSIAWKWDLGGNTPLPFGNYQAERKAITLGVTGTYLASWAGSINWTSNFGPDAPLDDRDFASVTISYAF 190          
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Match: A0A3D3UJ75_9PROT (Uncharacterized protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UJ75_9PROT)

HSP 1 Score: 198 bits (503), Expect = 2.010e-62
Identity = 90/143 (62.94%), Postives = 111/143 (77.62%), Query Frame = 1
Query:   88 VTEVGMVWAPGISTSSAIASSGSEGLLNPIAAATYKLNADLKGPTNYATPFSWGAQGIFNMTYNRVFGSPVNLVPQIAWRWDLGGRTPSPLGNYMAERKAIGLSLAANYQSRWTGSVSWTANFGPDAPLDDRDFASINIAYAF 516
            +TE+GMV+ P IS   A+++SGS GLLN +AA TYKL+A+L+  T+YAT FSWGAQG   +TYNR FG+P+NL P   WRWD  GRTPSP  NY  +RK+I L + A+Y + W GS+SWT NFGPDAPLDDRDFASINI+YAF
Sbjct:    1 MTEIGMVYLPSISAEDALSASGSSGLLNGLAAGTYKLSAELESATHYATKFSWGAQGRIGLTYNRAFGTPINLSPVFNWRWDFNGRTPSPFSNYQEDRKSISLGVNASYLASWAGSISWTHNFGPDAPLDDRDFASINISYAF 143          
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Match: A0A351T7Q8_9PROT (Uncharacterized protein (Fragment) n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T7Q8_9PROT)

HSP 1 Score: 206 bits (525), Expect = 2.310e-60
Identity = 96/171 (56.14%), Postives = 124/171 (72.51%), Query Frame = 1
Query:    4 FTAQATITSVLFGSNPVVQFASADGGAMVTEVGMVWAPGISTSSAIASSGSEGLLNPIAAATYKLNADLKGPTNYATPFSWGAQGIFNMTYNRVFGSPVNLVPQIAWRWDLGGRTPSPLGNYMAERKAIGLSLAANYQSRWTGSVSWTANFGPDAPLDDRDFASINIAYAF 516
            FTAQ T T +LF SNP+V    AD G ++TE GMV+ PGIS++  +++SG+ GL N +A+  Y +N  LK   N  T FSWGAQG   +TYNR+FG+P N+ P++ WRWD+ GRTP+P GN+  +RK+I L   A Y S WTGSVSWT NFGPDAPL DRDFAS+N++YAF
Sbjct:  452 FTAQTTFTQLLFASNPMVTALGADQGTLITEFGMVYVPGISSADGLSASGTSGLANTLASQYYHVNKSLKFAENLPTRFSWGAQGRVQLTYNRLFGTPFNVSPRVNWRWDINGRTPAPYGNFQEDRKSISLGANATYLSSWTGSVSWTHNFGPDAPLSDRDFASLNVSYAF 622          
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Match: A0A3C0TXT2_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXT2_9PROT)

HSP 1 Score: 119 bits (299), Expect = 3.280e-28
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 VFTAQATITSVLFGSNPVVQFASADGGAMVTEVGMVWAPGISTSSAIASSGSEGLLNPIAAATYKLNADLKGPTNYAT 234
            VFTAQ T T  LFGSNPVVQFASADGG +VTEVGMV+ PG+ST+SAIASS SEGL NPIAAATYKLN++LKGPTNYAT
Sbjct:  571 VFTAQGTSTMALFGSNPVVQFASADGGTVVTEVGMVFVPGLSTASAIASSNSEGLFNPIAAATYKLNSELKGPTNYAT 648          
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Match: X5M8H6_9HYPH (Uncharacterized protein n=2 Tax=Candidatus Phaeomarinobacter ectocarpi TaxID=1458461 RepID=X5M8H6_9HYPH)

HSP 1 Score: 99.0 bits (245), Expect = 6.860e-21
Identity = 68/185 (36.76%), Postives = 100/185 (54.05%), Query Frame = 1
Query:    1 VFTAQATITSVLFGSNPVVQFASADGGAMVTEVGMVWAPGISTSS-AIASSGSEGLLNPIAAATYK---------LNADLKGPTNYATPFSWGAQGIFNMTYNRVFGSPVNLVPQIAWRWDLGGRTPSPLGNYMAERKAIGLSLAANYQSRWTGSVSWTANFGPDA---PLDDRDFASINIAYAF 516
            VFT Q   T+    SNP++ F  AD G +VTE G+V  PG+   S A  ++G+    N ++A             LN D +      T  S+G   +  + YN  FG+P  L PQ+ +R DL G TP+PLGN++ +R++IGLS+ AN Q+ W   +S+T   G +     LDD DF S+  +Y+F
Sbjct:  679 VFTFQIGTTATYTNSNPLINFLGADIGILVTEFGVVHVPGVPDESPATQAAGTVVEFNRLSAVCRSGTDLPLGGILNLDSRQGCR-PTETSYGGILLTRLDYNNAFGTPWTLSPQLVYRHDLEGFTPAPLGNFVEDRRSIGLSVTANLQNTWRVGLSYTDFMGSETYQNNLDD-DFVSLTASYSF 861          
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Match: A0A081B8Y3_9HYPH (Conserved protein n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081B8Y3_9HYPH)

HSP 1 Score: 95.9 bits (237), Expect = 7.640e-20
Identity = 58/156 (37.18%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   58 QFASADGGAMVTEVGMVWAPGISTSSAIASSGSEGLLNPIAAATYKLNADLKGPTNYATPFSWGAQGIFNMTYNRVFGSPVNLVPQIAWRWDLGGRTPSPLG-NYMAERKAIGLSLAANYQSRWTGSVSWTANFGPDA--PLDDRDFASINIAYAF 516
            QF  +D    +T VG ++ P         S    G+ NP  AA +   A+      Y T FS G + +    YN  FG PV L P +AWR D+ G +P P+G  +++  KA+ L L A+YQS W  S+ +T +FG      L+DRDF S +I+YAF
Sbjct:  485 QFIGSDNATFLTNVGFMYVPDAEDHPLNRSGSLRGIENPFGAALF---ANGVTEVQYGTAFSAGYRLVVAADYNNAFGLPVTLSPNVAWRHDVTGYSPGPIGPGFVSGLKAVTLGLNASYQSAWRASLGYTNSFGGGFRNALNDRDFVSASISYAF 637          
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Match: A0A6L7MD14_9PROT (DUF1302 domain-containing protein n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L7MD14_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 1.440e-17
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  226 YATPFSWGAQGIFNMTYNRVFGSPVNLVPQIAWRWDLGGRTPSPLGNYMAERKAIGLSLAANYQSRWTGSVSWTANFGPDAP--LDDRDFASINIAYAF 516
            +A  FSWG + +  MTYN   G PV+L PQIA+  D+ G  P+P+GN++ +RK + LS+ A Y   W   +S+T +FG  A   L+DRDF +  + Y+F
Sbjct:  520 FADSFSWGYRALLRMTYNNAVG-PVSLSPQIAFSHDVNGTAPTPIGNFIEDRKTVTLSINAGYLHSWRAGLSYTNSFGGGAANLLNDRDFLAFTMNYSF 617          
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Match: A0A353LLP1_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LLP1_9PROT)

HSP 1 Score: 85.9 bits (211), Expect = 1.590e-16
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 VFTAQATITSVLFGSNPVVQFASADGGAMVTEVGMVWAPGISTSSAIASSGSEGLLNPIAAATYKLNADLKGPTNYAT 234
            VFTAQ T+TS+LF SNP V    AD G ++TE+GMV+ P IS   A+++SGS GLLN +AA TYKL+A+L+  T+YAT
Sbjct:  333 VFTAQTTLTSILFASNPFVTAMGADQGVLITEIGMVYLPSISAEDALSASGSSGLLNGLAAGTYKLSAELESATHYAT 410          
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Match: UPI0012484F8F (DUF1302 domain-containing protein n=1 Tax=Marinobacter halotolerans TaxID=1569211 RepID=UPI0012484F8F)

HSP 1 Score: 85.5 bits (210), Expect = 3.180e-16
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  226 YATPFSWGAQGIFNMTYNRVFGSPVNLVPQIAWRWDLGGRTPSPLGNYMAERKAIGLSLAANYQSRWTGSVSWTANFGPDAP---LDDRDFASINIAYAF 516
            Y T FSWG +      Y   F   VNL PQ+AW  D+ G  P P GN++ +RK+IG+SL A YQ++ TG++++T NF    P   L DRDF S +++Y+F
Sbjct:  538 YTTSFSWGYRSRLVWDYPNAFAG-VNLSPQLAWSHDVRGFAPQPAGNFIEDRKSIGVSLEAVYQNKITGNIAYT-NFMDGEPFNELTDRDFVSASVSYSF 635          
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Match: A0A3N2R390_9GAMM (DUF1302 domain-containing protein n=2 Tax=Marinobacter TaxID=2742 RepID=A0A3N2R390_9GAMM)

HSP 1 Score: 85.1 bits (209), Expect = 4.310e-16
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  184 ATYKLNADLKGPTNYATPFSWGAQGIFNMTYNRVFGSPVNLVPQIAWRWDLGGRTPSPLGNYMAERKAIGLSLAANYQSRWTGSVSWTANFG--PDAPLDDRDFASINIAYAF 516
            A   +N +      + T FSWG +  F   Y  VF   VNL PQ+A+  D+ G  PSP GN++  RKAIGLSL   YQ+R++ +V +T  FG  P   L DRDF S +++ +F
Sbjct:  510 AALNINTNYCNNEGFTTSFSWGYRTRFVWDYPNVFAG-VNLSPQLAFSHDVQGYAPSPGGNFLEGRKAIGLSLTGVYQNRYSANVGYTNYFGGKPYNELTDRDFVSASVSVSF 621          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6602.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYG0_9PROT2.470e-7866.86Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A3D3UJ75_9PROT2.010e-6262.94Uncharacterized protein n=4 Tax=Alphaproteobacteri... [more]
A0A351T7Q8_9PROT2.310e-6056.14Uncharacterized protein (Fragment) n=5 Tax=Alphapr... [more]
A0A3C0TXT2_9PROT3.280e-2882.05Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
X5M8H6_9HYPH6.860e-2136.76Uncharacterized protein n=2 Tax=Candidatus Phaeoma... [more]
A0A081B8Y3_9HYPH7.640e-2037.18Conserved protein n=1 Tax=Tepidicaulis marinus Tax... [more]
A0A6L7MD14_9PROT1.440e-1742.42DUF1302 domain-containing protein n=2 Tax=Proteoba... [more]
A0A353LLP1_9PROT1.590e-1657.69Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
UPI0012484F8F3.180e-1644.00DUF1302 domain-containing protein n=1 Tax=Marinoba... [more]
A0A3N2R390_9GAMM4.310e-1641.59DUF1302 domain-containing protein n=2 Tax=Marinoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6602contigP-wetherbeei_contig6602:2634..3152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1282876.BAOK01000001_gene3597
PFAMsDUF1302
Model size519
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.32e-22
EggNOG OGsCOG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,2U8WW@28211|Alphaproteobacteria
DescriptionProtein of unknown function (DUF1302)
Cds size519
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.9690409-CDS-P-wetherbeei_contig6602:2633..31521683186924.9690409-CDS-P-wetherbeei_contig6602:2633..3152Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6602 2634..3152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6602.3.1prot_P-wetherbeei_contig6602.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6602 2634..3152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6602.3.1

>prot_P-wetherbeei_contig6602.3.1 ID=prot_P-wetherbeei_contig6602.3.1|Name=mRNA_P-wetherbeei_contig6602.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
VFTAQATITSVLFGSNPVVQFASADGGAMVTEVGMVWAPGISTSSAIASS
GSEGLLNPIAAATYKLNADLKGPTNYATPFSWGAQGIFNMTYNRVFGSPV
NLVPQIAWRWDLGGRTPSPLGNYMAERKAIGLSLAANYQSRWTGSVSWTA
NFGPDAPLDDRDFASINIAYAF*
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mRNA from alignment at P-wetherbeei_contig6602:2634..3152-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6602.3.1 ID=mRNA_P-wetherbeei_contig6602.3.1|Name=mRNA_P-wetherbeei_contig6602.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig6602:2634..3152- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTCACCGCGCAGGCCACAATCACCTCGGTGCTGTTCGGTTCCAACCC GGTGGTGCAATTCGCCAGCGCGGATGGCGGCGCCATGGTGACGGAAGTCG GCATGGTCTGGGCGCCGGGCATTTCCACCAGCTCGGCGATTGCTTCGTCT GGCAGCGAAGGGTTGCTGAACCCGATAGCCGCCGCAACCTACAAGCTGAA TGCGGACCTGAAGGGGCCGACCAACTACGCCACCCCATTCTCGTGGGGCG CGCAGGGCATCTTCAACATGACCTATAACCGCGTGTTTGGCAGCCCCGTT AATCTGGTGCCACAGATTGCCTGGCGCTGGGATCTGGGTGGCCGCACCCC CTCACCGCTCGGTAACTATATGGCGGAACGCAAGGCGATTGGCCTGTCGC TGGCGGCGAACTATCAGTCGCGCTGGACGGGTTCGGTCAGCTGGACCGCC AATTTCGGTCCGGATGCGCCGCTCGATGACCGCGACTTTGCCTCGATCAA CATCGCCTATGCTTTCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6602:2634..3152-

>mRNA_P-wetherbeei_contig6602.3.1 ID=mRNA_P-wetherbeei_contig6602.3.1|Name=mRNA_P-wetherbeei_contig6602.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig6602:2634..3152- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTCACCGCGCAGGCCACAATCACCTCGGTGCTGTTCGGTTCCAACCC
GGTGGTGCAATTCGCCAGCGCGGATGGCGGCGCCATGGTGACGGAAGTCG
GCATGGTCTGGGCGCCGGGCATTTCCACCAGCTCGGCGATTGCTTCGTCT
GGCAGCGAAGGGTTGCTGAACCCGATAGCCGCCGCAACCTACAAGCTGAA
TGCGGACCTGAAGGGGCCGACCAACTACGCCACCCCATTCTCGTGGGGCG
CGCAGGGCATCTTCAACATGACCTATAACCGCGTGTTTGGCAGCCCCGTT
AATCTGGTGCCACAGATTGCCTGGCGCTGGGATCTGGGTGGCCGCACCCC
CTCACCGCTCGGTAACTATATGGCGGAACGCAAGGCGATTGGCCTGTCGC
TGGCGGCGAACTATCAGTCGCGCTGGACGGGTTCGGTCAGCTGGACCGCC
AATTTCGGTCCGGATGCGCCGCTCGATGACCGCGACTTTGCCTCGATCAA
CATCGCCTATGCTTTCTAA
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