mRNA_P-wetherbeei_contig6596.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6596.1.1
Unique NamemRNA_P-wetherbeei_contig6596.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6596.1.1 vs. uniprot
Match: A0A7S2R9L1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9L1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.660e-5
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:  406 DPRQNYTVNVGHAIEALRNDIPLIFEEAPTMDIFSPDIVLK 528
            D ++NYT+NVG AIE LR+D+PL+F  AP MDIF+  +VL 
Sbjct:  179 DLKRNYTLNVGKAIETLRDDVPLMFRSAPDMDIFADGVVLS 219
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BLAST of mRNA_P-wetherbeei_contig6596.1.1 vs. uniprot
Match: A0A836CA49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA49_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 8.740e-5
Identity = 27/87 (31.03%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:  316 DPTGFASNAAQLHQIEMVDLLERPSGPRM------PDPRQNYTVNVGHAIEALRNDIPLIFEEAPTMDIFSPDIVLKVQR----RGR 546
            D +   + A  ++++  V+L ER +             +Q +TV +GH I+ L+ ++P++FE  P++DIF+ D+VLK  +    RGR
Sbjct:   54 DESAHVAAAPAVNEVSRVELPERDTSTEDRLNQEDEKKKQEFTVALGHCIDTLQEELPVLFERRPSLDIFTSDVVLKDPKGTLSRGR 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6596.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2R9L1_9STRA2.660e-558.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CA49_9STRA8.740e-531.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6596contigP-wetherbeei_contig6596:1343..2194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3712.Bo01139s040.1
PFAMsDUF2358
Model size852
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.00012
EggNOG OGsKOG2546@1|root,KOG2546@2759|Eukaryota,37HI2@33090|Viridiplantae,3GCXJ@35493|Streptophyta,3HT8C@3699|Brassicales
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-05_003630.1
DescriptionUncharacterized conserved protein (DUF2358)
Cds size600
COG categoryTZ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.287579-UTR-P-wetherbeei_contig6596:1342..14201683186924.287579-UTR-P-wetherbeei_contig6596:1342..1420Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6596 1343..1420 +
1683186924.3066695-UTR-P-wetherbeei_contig6596:2020..21941683186924.3066695-UTR-P-wetherbeei_contig6596:2020..2194Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6596 2021..2194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.2983596-CDS-P-wetherbeei_contig6596:1420..20201683186924.2983596-CDS-P-wetherbeei_contig6596:1420..2020Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6596 1421..2020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6596.1.1prot_P-wetherbeei_contig6596.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6596 1421..2020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6596.1.1

>prot_P-wetherbeei_contig6596.1.1 ID=prot_P-wetherbeei_contig6596.1.1|Name=mRNA_P-wetherbeei_contig6596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp
MMRRRPTLLLSALCGCFLSLVQPFTLGLAPSRRLARLHVAKGGSTPEGTP
TAAGTRRPAEAALNAAQAHSHMSFFGAGWDPTGFASNAAQLHQIEMVDLL
ERPSGPRMPDPRQNYTVNVGHAIEALRNDIPLIFEEAPTMDIFSPDIVLK
VQRRGRGWLVILFICLTATLLFSCFASVCGALFVASVVLPSKSRLSALN*
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mRNA from alignment at P-wetherbeei_contig6596:1343..2194+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6596.1.1 ID=mRNA_P-wetherbeei_contig6596.1.1|Name=mRNA_P-wetherbeei_contig6596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig6596:1343..2194+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAGCCGGCGGATTCTTGCTCTCAGAGAGGGATCGATTCAGTTCGATCA
TCAAAAGTCACTCATCCACCCAGTTCAAATGATGCGACGACGTCCGACCC
TGCTTTTATCTGCTCTGTGTGGGTGCTTTCTGTCCCTGGTGCAACCATTT
ACGCTGGGGTTAGCTCCGTCACGACGTCTGGCCAGACTACACGTTGCCAA
AGGAGGTTCAACGCCGGAGGGAACGCCGACAGCAGCAGGCACCCGCCGCC
CAGCGGAGGCAGCCTTGAATGCGGCGCAAGCACACTCGCACATGTCGTTT
TTTGGCGCTGGATGGGACCCAACAGGTTTCGCTTCCAACGCCGCACAACT
GCATCAGATCGAGATGGTGGATCTGCTCGAGCGGCCGTCGGGCCCGCGAA
TGCCGGACCCGAGGCAAAATTACACCGTAAACGTTGGCCACGCCATCGAG
GCGCTTCGCAACGACATTCCTCTGATCTTTGAGGAGGCGCCGACGATGGA
CATCTTCTCGCCCGACATCGTCTTGAAGGTACAGAGACGTGGCAGGGGCT
GGCTCGTCATTCTTTTTATTTGCTTGACAGCAACACTACTTTTTTCTTGC
TTTGCCAGCGTTTGTGGAGCCTTGTTCGTTGCTTCGGTGGTTCTGCCTTC
CAAAAGCAGATTATCGGCCTTGAACTAGATTCTGGGTATATTTCATAGCA
CCGGCGCTCTGATTTGCGCCAACAGCCAGCAACCTCAAGTGCGGCACGTC
CTCCAATTTTTCTGTGCTTTTCCTTCTTTTTCCGTCTCGGCTGGCTGCGG
TCCTCCCTGTCTAGAAACGCCGCTTGCTCGCTCCCTCACCTCCTAGCAAT
TG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6596:1343..2194+

>mRNA_P-wetherbeei_contig6596.1.1 ID=mRNA_P-wetherbeei_contig6596.1.1|Name=mRNA_P-wetherbeei_contig6596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig6596:1343..2194+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGACGACGTCCGACCCTGCTTTTATCTGCTCTGTGTGGGTGCTT
TCTGTCCCTGGTGCAACCATTTACGCTGGGGTTAGCTCCGTCACGACGTC
TGGCCAGACTACACGTTGCCAAAGGAGGTTCAACGCCGGAGGGAACGCCG
ACAGCAGCAGGCACCCGCCGCCCAGCGGAGGCAGCCTTGAATGCGGCGCA
AGCACACTCGCACATGTCGTTTTTTGGCGCTGGATGGGACCCAACAGGTT
TCGCTTCCAACGCCGCACAACTGCATCAGATCGAGATGGTGGATCTGCTC
GAGCGGCCGTCGGGCCCGCGAATGCCGGACCCGAGGCAAAATTACACCGT
AAACGTTGGCCACGCCATCGAGGCGCTTCGCAACGACATTCCTCTGATCT
TTGAGGAGGCGCCGACGATGGACATCTTCTCGCCCGACATCGTCTTGAAG
GTACAGAGACGTGGCAGGGGCTGGCTCGTCATTCTTTTTATTTGCTTGAC
AGCAACACTACTTTTTTCTTGCTTTGCCAGCGTTTGTGGAGCCTTGTTCG
TTGCTTCGGTGGTTCTGCCTTCCAAAAGCAGATTATCGGCCTTGAACTAG
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