mRNA_P-wetherbeei_contig6593.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6593.4.1
Unique NamemRNA_P-wetherbeei_contig6593.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Match: A0A2A5EU69_9HYPH (Uncharacterized protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5EU69_9HYPH)

HSP 1 Score: 147 bits (371), Expect = 1.980e-43
Identity = 75/120 (62.50%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    1 RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALVLLAVAWRAEKYPNARPIALAGWGFNIGIVLFCGSLYVLGVTGSRALVLLTPMGGLAFMTGWGALAFSALR 360
            + WL  GA+NGLLAVA GAFGAHGL+     ++L+AF T AQYHMYHAL LLA+AW A + P +   A AGWGF+IGI+LF GSLY LG+TGSR+LVL+TP+GG+AF+ GW  LA +A R
Sbjct:    2 KIWLLLGAVNGLLAVAFGAFGAHGLKARAGAAELSAFETGAQYHMYHALALLALAWVASQAPTSLTTA-AGWGFSIGILLFSGSLYYLGITGSRSLVLVTPIGGVAFLIGWLCLAVAAYR 120          
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Match: A0A2E5BMY9_9HYPH (Uncharacterized protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BMY9_9HYPH)

HSP 1 Score: 142 bits (358), Expect = 1.880e-41
Identity = 71/120 (59.17%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALVLLAVAWRAEKYPNARPIALAGWGFNIGIVLFCGSLYVLGVTGSRALVLLTPMGGLAFMTGWGALAFSALR 360
            + W+  GALNG +AV  GAF AHGL+    P+DLAAF T A YHMYHAL LLAV W A + P+   + +AGW F +GI+LF GSLY LG+TGSR+LVL+TPMGG AF+ GW  LA +A R
Sbjct:    2 KLWILLGALNGFMAVGFGAFAAHGLKARATPTDLAAFNTGADYHMYHALALLAVGWLAAQAPSPL-VTMAGWAFALGILLFSGSLYYLGLTGSRSLVLVTPMGGTAFLIGWLCLAIAAYR 120          
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Match: A0A2Z4UJU4_9HYPH (Uncharacterized protein n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2Z4UJU4_9HYPH)

HSP 1 Score: 142 bits (357), Expect = 2.670e-41
Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    1 RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALVLLAVAWRAEKYPNARPIALAGWGFNIGIVLFCGSLYVLGVTGSRALVLLTPMGGLAFMTGWGALAFSA 354
            + WL  GALNG LAV  GAFGAHGL+     +DLAAF T AQYHM HAL LLAVAW A   P+A     AGW F IGI+LF GSLY LG+TGSR+LVL+TP+GG AFM GW  LA +A
Sbjct:    2 KLWLMLGALNGFLAVGFGAFGAHGLKARASATDLAAFETGAQYHMTHALALLAVAWVASIAPSALATT-AGWAFTIGILLFSGSLYFLGITGSRSLVLITPIGGTAFMLGWFCLAIAA 118          
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Match: X5MLP5_9HYPH (COG2363 n=1 Tax=Candidatus Phaeomarinobacter ectocarpi TaxID=1458461 RepID=X5MLP5_9HYPH)

HSP 1 Score: 140 bits (352), Expect = 1.790e-40
Identity = 74/125 (59.20%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    1 RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALVLLAVAWRAEKYPNARPIA----LAGWGFNIGIVLFCGSLYVLGVTGSRALVLLTPMGGLAFMTGWGALAFSALRT 363
            + WL   ALNG +AVAAGAFGAHGL+G V    LAAF T AQYHMYHAL L+ VAW A   P +   A    +AGW F  GIVLF GSLY  G+T SRALVL+TP+GGLAF+ GW  L ++AL++
Sbjct:    2 KLWLTLAALNGFIAVAAGAFGAHGLQGRVGERALAAFETGAQYHMYHALALVGVAWLASISPQSGITATGPTVAGWAFLTGIVLFSGSLYFYGLTESRALVLITPLGGLAFLCGWATLLYAALKS 126          
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Match: A0A6N6VEQ1_9HYPH (DUF423 domain-containing protein n=2 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VEQ1_9HYPH)

HSP 1 Score: 139 bits (350), Expect = 3.500e-40
Identity = 70/120 (58.33%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALVLLAVAWRAEKYPNARPIALAGWGFNIGIVLFCGSLYVLGVTGSRALVLLTPMGGLAFMTGWGALAFSALR 360
            + WL  GAL+G LAVA GAFG+HGL   VPP  +  F    +YHMYHAL LLAVAW A + P+A  ++ AGW F  GIVLF GSLY LG+TGS+ALVL+TP+GG+AFM GW  L  + L+
Sbjct:    3 KLWLTIGALSGFLAVALGAFGSHGLAHRVPPEQITTFEIGVRYHMYHALALLAVAWLASREPSAL-VSTAGWAFVAGIVLFSGSLYFLGLTGSKALVLVTPLGGVAFMIGWLCLVVAGLK 121          
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Match: A0A2N3EIC7_9PROT (DUF423 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3EIC7_9PROT)

HSP 1 Score: 137 bits (346), Expect = 1.380e-39
Identity = 72/118 (61.02%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALVLLAVAWRAEKYPNARPIALAGWGFNIGIVLFCGSLYVLGVTGSRALVLLTPMGGLAFMTGWGALAFSA 354
            R WL  GAL+GL++VA GAF AHGL+  V P+++AAF T A+Y MYHAL LLAVAW A +         AGW F IG +LF GSLY LG+TGSRALVL+TP+GG+AF+ GW ALA SA
Sbjct:    2 RLWLTIGALSGLVSVALGAFAAHGLQARVGPAEIAAFETGARYQMYHALALLAVAWAASQ-GGGNFAQAAGWAFLIGTILFSGSLYYLGLTGSRALVLVTPIGGIAFLAGWLALALSA 118          
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Match: A0A2N3EP71_9PROT (DUF423 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3EP71_9PROT)

HSP 1 Score: 137 bits (344), Expect = 2.950e-39
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALVLLAVAWRAEKYPNARP---IALAGWGFNIGIVLFCGSLYVLGVTGSRALVLLTPMGGLAFMTGWGALAFS 351
            + WL  GAL+GL+AVA GAFGAHGL+    P++L AF T A+Y MYHAL L+AVAW A +         IA+AGW F  G +LFCGSLY LG+TGSR LV++TP+GGLAF+ GW +LA +
Sbjct:    2 KLWLILGALSGLMAVALGAFGAHGLQARAGPAELTAFETGARYQMYHALALIAVAWAATQGGTTLTNLTIAIAGWAFVTGTILFCGSLYYLGLTGSRTLVMITPVGGLAFLAGWLSLALA 121          
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Match: A7HW25_PARL1 (Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=A7HW25_PARL1)

HSP 1 Score: 136 bits (343), Expect = 4.310e-39
Identity = 69/120 (57.50%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    1 RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALVLLAVAWRAEKYP---NARPIALAGWGFNIGIVLFCGSLYVLGVTGSRALVLLTPMGGLAFMTGWGALAFS 351
            R WL  GAL+GL++VA GAF AHGL+  V P++LAAF T A+Y MYHAL L+AVAW + +     ++  +++AGW F IG VLF GSLY LG+TGSR+LVL+TP+GG+AF+ GW ALA +
Sbjct:    2 RMWLTIGALSGLISVALGAFAAHGLQNRVGPTELAAFETGARYQMYHALALIAVAWASTQAGGGFSSLSVSIAGWAFLIGSVLFSGSLYYLGITGSRSLVLVTPVGGVAFLAGWVALALA 121          
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Match: UPI0003805134 (DUF423 domain-containing protein n=1 Tax=Amorphus coralli TaxID=340680 RepID=UPI0003805134)

HSP 1 Score: 135 bits (339), Expect = 2.160e-38
Identity = 72/119 (60.50%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    1 RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALVLLAVAWRAEKYPNARPIALAGWGFNIGIVLFCGSLYVLGVTGSRALVLLTPMGGLAFMTGWGALAFSAL 357
            R W+  GALNG LAVA GAF AHGL G VP +DLA F+T A YH+ HA+ L+AV   A    + R ++ AGW F  GIVLF GSLYVLG TGSRALV+LTP+GG AF+ GW ALA++A+
Sbjct:   11 RLWIVAGALNGFLAVAFGAFAAHGLRGRVPDADLAIFQTGAHYHLVHAVALVAVGLAAAHLKH-RGVSAAGWLFLAGIVLFSGSLYVLGFTGSRALVMLTPVGGTAFLAGWLALAWAAI 128          
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Match: A0A081B9T5_9HYPH (Conserved protein n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081B9T5_9HYPH)

HSP 1 Score: 134 bits (338), Expect = 2.260e-38
Identity = 71/118 (60.17%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALVLLAVAWRAEKYPNARPIALAGWGFNIGIVLFCGSLYVLGVTGSRALVLLTPMGGLAFMTGWGALAFSA 354
            + WL  GA+NG L+VA GAF AH L G V   +LAAF T A+YHMYHAL LLAVAW A+ + +A     AGW F  G++LF GSLY LG+TGSRALVL+TP+GGLAF+ GW  LA +A
Sbjct:    2 KLWLILGAVNGFLSVALGAFAAHRLAGKVGEKELAAFETGARYHMYHALALLAVAWLAQ-HASASLTQAAGWAFVAGMILFSGSLYYLGLTGSRALVLVTPVGGLAFLAGWALLAAAA 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6593.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A5EU69_9HYPH1.980e-4362.50Uncharacterized protein n=1 Tax=Rhodobiaceae bacte... [more]
A0A2E5BMY9_9HYPH1.880e-4159.17Uncharacterized protein n=1 Tax=Rhodobiaceae bacte... [more]
A0A2Z4UJU4_9HYPH2.670e-4163.56Uncharacterized protein n=3 Tax=Hyphomicrobiales T... [more]
X5MLP5_9HYPH1.790e-4059.20COG2363 n=1 Tax=Candidatus Phaeomarinobacter ectoc... [more]
A0A6N6VEQ1_9HYPH3.500e-4058.33DUF423 domain-containing protein n=2 Tax=Parvibacu... [more]
A0A2N3EIC7_9PROT1.380e-3961.02DUF423 domain-containing protein n=1 Tax=Alphaprot... [more]
A0A2N3EP71_9PROT2.950e-3957.50DUF423 domain-containing protein n=1 Tax=Alphaprot... [more]
A7HW25_PARL14.310e-3957.50Uncharacterized protein n=1 Tax=Parvibaculum lavam... [more]
UPI00038051342.160e-3860.50DUF423 domain-containing protein n=1 Tax=Amorphus ... [more]
A0A081B9T5_9HYPH2.260e-3860.17Conserved protein n=1 Tax=Tepidicaulis marinus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6593contigP-wetherbeei_contig6593:2370..2744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1282876.BAOK01000001_gene1458
PFAMsDUF423
Model size375
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.53e-43
EggNOG OGsCOG2363@1|root,COG2363@2|Bacteria,1MZX3@1224|Proteobacteria,2UGS5@28211|Alphaproteobacteria,4BSYP@82117|unclassified Alphaproteobacteria
DescriptionProtein of unknown function (DUF423)
Cds size375
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.2102518-CDS-P-wetherbeei_contig6593:2369..27441683186924.2102518-CDS-P-wetherbeei_contig6593:2369..2744Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6593 2370..2744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6593.4.1prot_P-wetherbeei_contig6593.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6593 2370..2744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6593.4.1

>prot_P-wetherbeei_contig6593.4.1 ID=prot_P-wetherbeei_contig6593.4.1|Name=mRNA_P-wetherbeei_contig6593.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
RTWLWTGALNGLLAVAAGAFGAHGLEGHVPPSDLAAFRTAAQYHMYHALV
LLAVAWRAEKYPNARPIALAGWGFNIGIVLFCGSLYVLGVTGSRALVLLT
PMGGLAFMTGWGALAFSALRTGKA*
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mRNA from alignment at P-wetherbeei_contig6593:2370..2744-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6593.4.1 ID=mRNA_P-wetherbeei_contig6593.4.1|Name=mRNA_P-wetherbeei_contig6593.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig6593:2370..2744- (Phaeothamnion wetherbeei SAG_119_79)
AGAACCTGGTTATGGACCGGTGCGCTGAATGGCCTGCTGGCGGTGGCGGC CGGGGCGTTCGGCGCGCATGGGCTGGAAGGCCATGTTCCGCCAAGCGATC TGGCGGCGTTTCGTACCGCCGCGCAGTACCACATGTATCATGCGCTGGTC TTGCTGGCGGTGGCCTGGCGCGCAGAGAAATACCCGAATGCACGTCCCAT CGCGTTGGCTGGATGGGGGTTTAACATTGGTATCGTGCTTTTTTGCGGAT CACTTTATGTTCTGGGGGTAACCGGATCACGCGCCCTTGTATTGCTGACT CCCATGGGCGGATTGGCGTTTATGACGGGCTGGGGTGCGCTGGCCTTCTC AGCGCTGAGGACAGGGAAGGCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6593:2370..2744-

>mRNA_P-wetherbeei_contig6593.4.1 ID=mRNA_P-wetherbeei_contig6593.4.1|Name=mRNA_P-wetherbeei_contig6593.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig6593:2370..2744- (Phaeothamnion wetherbeei SAG_119_79)
AGAACCTGGTTATGGACCGGTGCGCTGAATGGCCTGCTGGCGGTGGCGGC
CGGGGCGTTCGGCGCGCATGGGCTGGAAGGCCATGTTCCGCCAAGCGATC
TGGCGGCGTTTCGTACCGCCGCGCAGTACCACATGTATCATGCGCTGGTC
TTGCTGGCGGTGGCCTGGCGCGCAGAGAAATACCCGAATGCACGTCCCAT
CGCGTTGGCTGGATGGGGGTTTAACATTGGTATCGTGCTTTTTTGCGGAT
CACTTTATGTTCTGGGGGTAACCGGATCACGCGCCCTTGTATTGCTGACT
CCCATGGGCGGATTGGCGTTTATGACGGGCTGGGGTGCGCTGGCCTTCTC
AGCGCTGAGGACAGGGAAGGCGTAG
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