mRNA_P-wetherbeei_contig1275.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1275.4.1
Unique NamemRNA_P-wetherbeei_contig1275.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Match: A0A3C0TUW6_9PROT (Iron-sulfur cluster assembly scaffold protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUW6_9PROT)

HSP 1 Score: 225 bits (574), Expect = 1.870e-73
Identity = 111/143 (77.62%), Postives = 129/143 (90.21%), Query Frame = 1
Query:    4 VNELYNKAILTLAGNIGKTERLADPDATVFLDSPLCGSRITVDVKMQGGRVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAPPPQGEWQELEVLQPVADYKARHGSVMLPFEAVVKAVDEICKKHA 432
            VN+LYNKAIL+LAGNI ++ RL  PDA+VFLDSPLCGSRITVD++M+G +V++Y AEVKACALGQAASA+MA+HVVGQTAAQLH+VA+ MRAMLKH APPP GEW ELEVLQPV +YKARHGSVMLPFEAVVKAVDE+  + A
Sbjct:    3 VNDLYNKAILSLAGNITRSGRLEKPDASVFLDSPLCGSRITVDIRMEGEKVTDYAAEVKACALGQAASAVMARHVVGQTAAQLHEVAEQMRAMLKHKAPPPAGEWGELEVLQPVTEYKARHGSVMLPFEAVVKAVDEVLARRA 145          
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Match: A0A3D3UGF4_9PROT (Iron-sulfur cluster assembly scaffold protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UGF4_9PROT)

HSP 1 Score: 221 bits (562), Expect = 2.780e-71
Identity = 114/149 (76.51%), Postives = 127/149 (85.23%), Query Frame = 1
Query:    1 MVNELYNKAILTLAGNIGKTERLADPDATVFLDSPLCGSRITVDVKMQGGRVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAPPPQGEWQELEVLQPVADYKARHGSVMLPFEAVVKAVDEICKKHAGKDTS 447
            MV +LYNK IL+LAGNI +TERL  PDATVFLDSPLCGSRITVD+KM G +VS+YGAEVKACALGQAASA+MAKHVVGQ++A L Q+A DMRAMLK  APPP G W ELEVLQPVADYKARHGSVMLPFEAVV+A+DEI  +    D S
Sbjct:    1 MVADLYNKTILSLAGNIARTERLDAPDATVFLDSPLCGSRITVDLKMTGDKVSDYGAEVKACALGQAASAVMAKHVVGQSSAALRQLAKDMRAMLKEKAPPPGGIWAELEVLQPVADYKARHGSVMLPFEAVVRAIDEIEAQRKTADAS 149          
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Match: A0A3B9BLH0_9PROT (Iron-sulfur cluster assembly scaffold protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9BLH0_9PROT)

HSP 1 Score: 179 bits (453), Expect = 1.650e-55
Identity = 90/110 (81.82%), Postives = 100/110 (90.91%), Query Frame = 1
Query:   88 VFLDSPLCGSRITVDVKMQGGRVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAPPPQGEWQELEVLQPVADYKARHGSVMLPFEAVVKAVDEI 417
            +FLDSPLCGSRITVD+KM G +VS+YGAEVKACALGQAASA+MAKHVVGQ++A L Q+A DMRAMLK  APPP G W ELEVLQPVADYKARHGSVMLPFEAVV+A+DEI
Sbjct:    1 MFLDSPLCGSRITVDLKMTGDKVSDYGAEVKACALGQAASAVMAKHVVGQSSAALRQLAKDMRAMLKEKAPPPGGIWAELEVLQPVADYKARHGSVMLPFEAVVRAIDEI 110          
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Match: A0A0D7EG63_RHOPL (Nitrogen fixation protein NifU n=2 Tax=Rhodopseudomonas TaxID=1073 RepID=A0A0D7EG63_RHOPL)

HSP 1 Score: 167 bits (424), Expect = 1.880e-50
Identity = 84/160 (52.50%), Postives = 114/160 (71.25%), Query Frame = 1
Query:    1 MVNELYNKAILTLAGNIGKTERLADPDATVFLDSPLCGSRITVDVKMQGGRVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAPPPQGEWQELEVLQPVADYKARHGSVMLPFEAVVKAVDEI--------CKKHAGKDTSPHA 456
            M+N++YN  I+ LAGNI +  RL DPDAT    S LCGS + +D+KM G  V+++  EVKACALGQA+S+IMA+HVVG TA++L ++ + +R MLK +A PP G+W E+ +L+PV DYKARH S +L F+AVV A+D+I        C K AG+D SP A
Sbjct:    1 MLNDIYNARIIELAGNIPRLGRLPDPDATATAHSKLCGSTVKIDLKMDGPVVTDFAHEVKACALGQASSSIMARHVVGSTASELRELREAVRRMLKENAAPPDGKWSEIAMLEPVRDYKARHASTLLTFDAVVDAIDQIEAKESEKECDKAAGEDASPQA 160          
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Match: A0A521VZ24_9HYPH (Iron-sulfur cluster assembly scaffold protein n=1 Tax=Xanthobacteraceae bacterium TaxID=2021379 RepID=A0A521VZ24_9HYPH)

HSP 1 Score: 166 bits (419), Expect = 7.190e-50
Identity = 83/150 (55.33%), Postives = 109/150 (72.67%), Query Frame = 1
Query:    1 MVNELYNKAILTLAGNIGKTERLADPDATVFLDSPLCGSRITVDVKMQGGRVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAPPPQGEWQELEVLQPVADYKARHGSVMLPFEAVVKAVDEICKKHAGKDTSP 450
            M+N++YNK IL LAGNI +  RLA PDA+    S LCGS +TVD+KM G  VS++  EVKACALGQA+S+IMA H+VG  AA+L  + D +R MLK + PPPQG+W ++ VL+PV DYKARH S +L F+AVV A+D+I  + A   + P
Sbjct:    1 MLNDVYNKRILELAGNIPRLGRLASPDASATALSKLCGSTVTVDLKMDGPVVSDFAHEVKACALGQASSSIMANHIVGSEAAELRTLRDTVRRMLKENGPPPQGKWADIAVLEPVRDYKARHASTLLTFDAVVDAIDKIEARRAALSSQP 150          
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Match: A0A562CB09_9HYPH (NifU-like protein involved in Fe-S cluster formation n=1 Tax=Mesorhizobium sp. J18 TaxID=935263 RepID=A0A562CB09_9HYPH)

HSP 1 Score: 164 bits (414), Expect = 3.760e-49
Identity = 78/144 (54.17%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 MVNELYNKAILTLAGNIGKTERLADPDATVFLDSPLCGSRITVDVKMQGGRVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAPPPQGEWQELEVLQPVADYKARHGSVMLPFEAVVKAVDEICKKHA 432
            M++++YN  IL  AGNIG+  RL+DPDA+    S LCGS +T+D+KM  G V+++  EVKACALGQA+S+IMA H++G  A +L +V + MR MLK + PPP+G + +L+ L+PV DYKARH S ML F+AVV A+D+I +KHA
Sbjct:    1 MIDDVYNAKILAFAGNIGRIGRLSDPDASATAHSKLCGSTVTIDLKMSDGVVADFAHEVKACALGQASSSIMAAHIIGARAGELREVRETMRKMLKENGPPPEGRFADLKYLEPVRDYKARHASTMLTFDAVVDAIDQIERKHA 144          
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Match: A0A0Q7TK49_9HYPH (Nitrogen fixation protein NifU n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TK49_9HYPH)

HSP 1 Score: 164 bits (414), Expect = 4.130e-49
Identity = 83/145 (57.24%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    1 MVNELYNKAILTLAGNIGKTERLADPDATVFLDSPLCGSRITVDVKMQGGRVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAPPPQGEWQELEVLQPVADYKARHGSVMLPFEAVVKAVDEICKKHAG 435
            M+N++YN  IL LA +I +  RL  PDAT    S LCGS +TVDVKM GG V+++  +VKACALGQA+S+IMA+HV+G T  +L +V + +R MLK + PPP G+W E+ VL+PV DYKARH S ML F+AVVKAVDEI  K  G
Sbjct:    1 MLNDVYNARILDLAAHIPRLGRLDAPDATATAHSKLCGSTVTVDVKMDGGAVTDFAHDVKACALGQASSSIMARHVIGATPDELREVRETVRKMLKENGPPPTGKWAEIAVLEPVRDYKARHASTMLTFDAVVKAVDEIEAKTGG 145          
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Match: A0A6N6VH02_9HYPH (Iron-sulfur cluster assembly scaffold protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VH02_9HYPH)

HSP 1 Score: 163 bits (413), Expect = 6.440e-49
Identity = 86/141 (60.99%), Postives = 107/141 (75.89%), Query Frame = 1
Query:    1 MVNELYNKAILTLAGNIGKTERLADPDATVFLDSPLCGSRITVDVKMQGGRVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAPPPQ----GEWQELEVLQPVADYKARHGSVMLPFEAVVKAVD 411
            M+NE+YN  IL LAGNI  TERLA PDA+    S LCGS++TVDVKM G +V  YGA+VKACALGQA+S+IMA HV+G TAA+LH+V   MR MLK    PP+    G+W++LEVL+PV +YKARH S +L F+AV +AVD
Sbjct:    1 MLNEIYNARILKLAGNIPLTERLAAPDASATAVSKLCGSKVTVDVKMDGDKVVAYGADVKACALGQASSSIMAAHVIGSTAAELHEVGAAMRRMLKEGGEPPREIYDGKWKDLEVLEPVRNYKARHASTLLIFDAVEEAVD 141          
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Match: A0A1I4QVF3_9HYPH (Iron-sulfur cluster assembly scaffold protein n=1 Tax=Pleomorphomonas diazotrophica TaxID=1166257 RepID=A0A1I4QVF3_9HYPH)

HSP 1 Score: 162 bits (410), Expect = 1.430e-48
Identity = 85/144 (59.03%), Postives = 105/144 (72.92%), Query Frame = 1
Query:    1 MVNELYNKAILTLAGNIGKTERLADPDATVFLDSPLCGSRITVDVKMQGGRVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAPPPQGEWQELEVLQPVADYKARHGSVMLPFEAVVKAVDEICKKHA 432
            M++E+YN  IL LAGNIG+  RLA PDAT    S LCGS+ITVD++M+G  V++Y  EVKACALGQAA+A+MA+HVVG TA +L Q  DDM AMLK  A PP G + E+  L+PV D+KARH S ML FEAVV  +D+I    A
Sbjct:    1 MLDEIYNARILDLAGNIGRIGRLAAPDATATRHSRLCGSQITVDLRMEGDVVADYAHEVKACALGQAAAAVMARHVVGATATELRQARDDMFAMLKEGAAPPAGRFAEISCLEPVRDFKARHTSTMLVFEAVVACLDDIAAARA 144          
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Match: UPI000489AC33 (iron-sulfur cluster assembly scaffold protein n=1 Tax=Chelativorans sp. J32 TaxID=935840 RepID=UPI000489AC33)

HSP 1 Score: 162 bits (409), Expect = 2.160e-48
Identity = 78/146 (53.42%), Postives = 109/146 (74.66%), Query Frame = 1
Query:    1 MVNELYNKAILTLAGNIGKTERLADPDATVFLDSPLCGSRITVDVKMQGGRVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAPPPQGEWQELEVLQPVADYKARHGSVMLPFEAVVKAVDEICKKHAGK 438
            M++++YN  IL  AGNI +  RLADPDAT    S LCGS +TVD+KM  G V+++  EV+ACALGQA+S++MA+HV+G +A +L  V ++MR MLK + PPP+G + +L+ L+PV DYKARH S ML F+AVV  +D+I +K AG+
Sbjct:    1 MIDDVYNAKILGFAGNISRVGRLADPDATATAHSKLCGSTVTVDLKMTDGVVTDFAHEVRACALGQASSSVMARHVIGASAEELRVVREEMRRMLKENGPPPEGRFADLKYLEPVRDYKARHASTMLTFDAVVDCIDQIERKEAGE 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1275.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TUW6_9PROT1.870e-7377.62Iron-sulfur cluster assembly scaffold protein n=1 ... [more]
A0A3D3UGF4_9PROT2.780e-7176.51Iron-sulfur cluster assembly scaffold protein n=4 ... [more]
A0A3B9BLH0_9PROT1.650e-5581.82Iron-sulfur cluster assembly scaffold protein (Fra... [more]
A0A0D7EG63_RHOPL1.880e-5052.50Nitrogen fixation protein NifU n=2 Tax=Rhodopseudo... [more]
A0A521VZ24_9HYPH7.190e-5055.33Iron-sulfur cluster assembly scaffold protein n=1 ... [more]
A0A562CB09_9HYPH3.760e-4954.17NifU-like protein involved in Fe-S cluster formati... [more]
A0A0Q7TK49_9HYPH4.130e-4957.24Nitrogen fixation protein NifU n=1 Tax=Pseudolabry... [more]
A0A6N6VH02_9HYPH6.440e-4960.99Iron-sulfur cluster assembly scaffold protein n=1 ... [more]
A0A1I4QVF3_9HYPH1.430e-4859.03Iron-sulfur cluster assembly scaffold protein n=1 ... [more]
UPI000489AC332.160e-4853.42iron-sulfur cluster assembly scaffold protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1275contigP-wetherbeei_contig1275:5947..6405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1297863.APJF01000004_gene346
Preferred namenifU
PFAMsNifU_N
Model size459
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.02e-49
EggNOG OGsCOG0822@1|root,COG0822@2|Bacteria,1RDGB@1224|Proteobacteria,2U74A@28211|Alphaproteobacteria,3JRJR@41294|Bradyrhizobiaceae
DescriptionNifU-like N terminal domain
Cds size459
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.8091073-CDS-P-wetherbeei_contig1275:5946..64051683185959.8091073-CDS-P-wetherbeei_contig1275:5946..6405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1275 5947..6405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1275.4.1prot_P-wetherbeei_contig1275.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1275 5947..6405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1275.4.1

>prot_P-wetherbeei_contig1275.4.1 ID=prot_P-wetherbeei_contig1275.4.1|Name=mRNA_P-wetherbeei_contig1275.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MVNELYNKAILTLAGNIGKTERLADPDATVFLDSPLCGSRITVDVKMQGG
RVSEYGAEVKACALGQAASAIMAKHVVGQTAAQLHQVADDMRAMLKHHAP
PPQGEWQELEVLQPVADYKARHGSVMLPFEAVVKAVDEICKKHAGKDTSP
HA*
back to top

mRNA from alignment at P-wetherbeei_contig1275:5947..6405-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1275.4.1 ID=mRNA_P-wetherbeei_contig1275.4.1|Name=mRNA_P-wetherbeei_contig1275.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig1275:5947..6405- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTAATGAGCTGTATAACAAGGCCATCCTCACCCTTGCCGGAAACAT TGGTAAAACGGAGCGGCTTGCCGATCCCGACGCCACGGTTTTCCTGGACA GCCCGCTCTGCGGCAGCCGCATCACGGTGGATGTCAAAATGCAGGGCGGC AGGGTTAGCGAATATGGGGCTGAGGTAAAAGCCTGCGCATTGGGGCAGGC GGCGTCCGCCATTATGGCCAAACATGTGGTTGGGCAAACGGCGGCGCAAT TACATCAGGTGGCGGACGATATGCGGGCGATGCTGAAACACCATGCGCCG CCGCCGCAGGGCGAATGGCAGGAACTGGAAGTGCTACAGCCGGTCGCGGA TTACAAGGCCCGGCATGGCTCTGTCATGCTGCCGTTCGAAGCGGTTGTAA AAGCCGTCGATGAAATCTGTAAAAAACACGCAGGCAAGGACACCAGCCCA CATGCGTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1275:5947..6405-

>mRNA_P-wetherbeei_contig1275.4.1 ID=mRNA_P-wetherbeei_contig1275.4.1|Name=mRNA_P-wetherbeei_contig1275.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig1275:5947..6405- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTAATGAGCTGTATAACAAGGCCATCCTCACCCTTGCCGGAAACAT
TGGTAAAACGGAGCGGCTTGCCGATCCCGACGCCACGGTTTTCCTGGACA
GCCCGCTCTGCGGCAGCCGCATCACGGTGGATGTCAAAATGCAGGGCGGC
AGGGTTAGCGAATATGGGGCTGAGGTAAAAGCCTGCGCATTGGGGCAGGC
GGCGTCCGCCATTATGGCCAAACATGTGGTTGGGCAAACGGCGGCGCAAT
TACATCAGGTGGCGGACGATATGCGGGCGATGCTGAAACACCATGCGCCG
CCGCCGCAGGGCGAATGGCAGGAACTGGAAGTGCTACAGCCGGTCGCGGA
TTACAAGGCCCGGCATGGCTCTGTCATGCTGCCGTTCGAAGCGGTTGTAA
AAGCCGTCGATGAAATCTGTAAAAAACACGCAGGCAAGGACACCAGCCCA
CATGCGTAA
back to top