mRNA_P-wetherbeei_contig6593.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6593.2.1
Unique NamemRNA_P-wetherbeei_contig6593.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Match: A0A3C0TT24_9PROT (3-ketoacyl-ACP reductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TT24_9PROT)

HSP 1 Score: 387 bits (993), Expect = 6.610e-134
Identity = 206/258 (79.84%), Postives = 232/258 (89.92%), Query Frame = 1
Query:    1 MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAEL----KGLGARAFGAPADLKGDGADLKAAIGGAAQAFGGLDILVQNVSAMAVQMRQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNGGPQPYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAAPKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQRVQF 762
            MDLGLKGKKAFVTGAS+GIGLRIARLLA+EGADVGICARDA  V++TVAEL    +G GARAFG  ADL+GDG  LKAAI GAA AFGGLDILVQNVSAMA+  R+KDW+AGYQVDILGT+R+V+AAMP L+KSSAGSI V+GSIA+VSG  GPQ YGA+KAAL+HYVSGL+ +LGP+N+RANTVSPGAV+FEGGVW QV++AAP RF ETVARNPM RMATPEEVANA VFLASPAASFITGVNL+VDGGTTQRVQ+
Sbjct:    1 MDLGLKGKKAFVTGASKGIGLRIARLLASEGADVGICARDAAGVKDTVAELETIGRGTGARAFGLAADLRGDGTALKAAIDGAASAFGGLDILVQNVSAMAMMAREKDWEAGYQVDILGTVRSVEAAMPHLEKSSAGSITVVGSIASVSGTFGPQAYGAVKAALIHYVSGLSRALGPRNMRANTVSPGAVYFEGGVWHQVEKAAPDRFRETVARNPMKRMATPEEVANAVVFLASPAASFITGVNLVVDGGTTQRVQY 258          
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Match: A0A352KCY2_9PROT (3-ketoacyl-ACP reductase n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KCY2_9PROT)

HSP 1 Score: 327 bits (837), Expect = 3.130e-110
Identity = 170/254 (66.93%), Postives = 203/254 (79.92%), Query Frame = 1
Query:    1 MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAELKGLGARAFGAPADLKGDGADLKAAIGGAAQAFGGLDILVQNVSAMAVQMRQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNGGPQPYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAAPKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQRVQF 762
            MDLGL+GK  FVTGASRGIGLRIAR+ A EGA++  CAR A  V  T AEL+  G    G  ADL GDGA LK AI  +AQ  GGLDILVQNVSAMAV   + DW+  +Q DILGT+R+VDA +P+L++S+A +IVV+G+ AA+SG GGPQPYGA+KA L+HYVSGLAHSL  + IRANTVSP +V+FEGGVW +VK+  P+RF++T+ARNP GRMATPEEVA A V+LASP ASFITGVNL+VDGG TQRVQF
Sbjct:    1 MDLGLQGKNVFVTGASRGIGLRIARIFAEEGANIAFCARHAEGVDATAAELEQKGVEVVGHVADLGGDGASLKQAIEASAQKLGGLDILVQNVSAMAVGPTEADWEKSFQTDILGTIRSVDACLPYLEQSTAAAIVVVGTTAAISGTGGPQPYGAMKAGLLHYVSGLAHSLAAKQIRANTVSPSSVYFEGGVWHRVKEHMPERFEQTIARNPSGRMATPEEVAKAVVYLASPCASFITGVNLVVDGGLTQRVQF 254          
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Match: A0A1Q7WT89_9PROT (3-ketoacyl-ACP reductase n=1 Tax=Alphaproteobacteria bacterium 13_1_20CM_3_64_12 TaxID=1803502 RepID=A0A1Q7WT89_9PROT)

HSP 1 Score: 263 bits (673), Expect = 2.450e-85
Identity = 148/257 (57.59%), Postives = 184/257 (71.60%), Query Frame = 1
Query:    1 MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAELKGLGARAFGAPADLKGDGADLKAA---IGGAAQAFGGLDILVQNVSAMAVQMRQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNGGPQPYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAAPKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQRVQF 762
            MDLGLKGKKA VTG +RGIG  IA LLAAEG DV ICAR   AV+ETVA L   G RA G   D+    ADL A    +G AA+  GG+DI V NVSA+A  M ++ W  G+++D++GT+  ++AA+P+L+KSSAG+IV +GS A     G  + Y A+KA L+ YV GLA +L  +N+RAN VSPG V+F+GGVW+ V++  P+ F   +ARNPMGRM TPEEVANA VFLASP ASFITG NLI+DG  TQRVQF
Sbjct:    1 MDLGLKGKKAIVTGGTRGIGRAIASLLAAEGCDVAICARHKDAVEETVATLGRTGIRATGGAVDV----ADLPALRRWVGEAAETLGGIDIFVANVSALAQGMDEEAWRKGFEIDVMGTVFGIEAALPFLEKSSAGAIVAVGSTAMAEVYGPTRSYAAVKATLIPYVKGLARNLAAKNVRANIVSPGNVYFKGGVWNIVEERNPEMFASMLARNPMGRMGTPEEVANAVVFLASPRASFITGTNLIIDGALTQRVQF 253          
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Match: A0A0Q6EYK2_9HYPH (3-ketoacyl-ACP reductase n=1 Tax=Aurantimonas sp. Leaf443 TaxID=1736378 RepID=A0A0Q6EYK2_9HYPH)

HSP 1 Score: 262 bits (670), Expect = 6.990e-85
Identity = 144/254 (56.69%), Postives = 176/254 (69.29%), Query Frame = 1
Query:    1 MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAELKGLGARAFGAPADLKGDGADLKAAIGGAAQAFGGLDILVQNVSAMAVQMRQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNGGPQPYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAAPKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQRVQF 762
            MDLGLKG+KA VTG +RGIGL IAR LA EGADV +CARD         +L  LG    G   D+  D A LK  +  AA+  GGLDI+V NVSA+AV   ++ W  G++ DILGT+R VDAAMP L+KS  GSIV I S++    +    PYGA KAAL+HY  GLA+ L P+NIRANTVSPG  +F GGVW Q++   P+ F  ++A NP GRMATP+E+ANAAVFLASP ASF+TG NL+VDG  T+ VQF
Sbjct:    1 MDLGLKGRKALVTGGTRGIGLAIARTLAEEGADVALCARDGALALSMAEDLARLGVSTLGRGVDVS-DAAALKGFVEEAARTLGGLDIVVANVSALAVGSDEESWRQGFETDILGTVRLVDAAMPSLEKSDCGSIVTIASVSGREIDFAAGPYGAFKAALIHYTQGLAYRLAPRNIRANTVSPGNTYFPGGVWTQIEAGNPELFAASLALNPTGRMATPQEIANAAVFLASPVASFVTGTNLVVDGALTRGVQF 253          
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Match: A0A2E5PNU4_9PROT (3-ketoacyl-ACP reductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PNU4_9PROT)

HSP 1 Score: 261 bits (668), Expect = 1.410e-84
Identity = 147/254 (57.87%), Postives = 180/254 (70.87%), Query Frame = 1
Query:    1 MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAELKGLGARAFGAPADLKGDGADLKAAIGGAAQAFGGLDILVQNVSAMAVQMRQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNGGPQPYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAAPKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQRVQF 762
            M+LGL+GK+A VTG +RGIG +I  LL AEG  VG CARD G V++ VA L G  A   GA  D+  D   L+  +G  A   GGLDILV N SA+A Q     W  G +VDILGT+  VDAA+P LQKSSA SI  I S AAV+ +GG + Y  +KAAL++Y+SGL+ +LG + IRANTVSPGA+FFEGGVWD  K+ AP  ++  VAR+P  R+ TPEEVANA VFLASPAAS+I+G NLIVDG +T RVQF
Sbjct:    1 MELGLRGKRAIVTGGTRGIGRKIVELLVAEGCHVGFCARDKGQVEDCVARLSGNAAIIRGASIDVTDD-VGLQTWVGETADDLGGLDILVANASALAGQADADAWRVGIEVDILGTVHAVDAAVPHLQKSSAASITAIASTAAVNTSGGVRAYSGVKAALINYLSGLSTNLGAKGIRANTVSPGAIFFEGGVWDVRKREAPAAYEAAVARSPFARLGTPEEVANAVVFLASPAASYISGANLIVDGASTTRVQF 253          
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Match: UPI001BC24050 (SDR family oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI001BC24050)

HSP 1 Score: 261 bits (667), Expect = 2.130e-84
Identity = 142/256 (55.47%), Postives = 181/256 (70.70%), Query Frame = 1
Query:    1 MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAELKGLGARAFGAPADLKGDGADLKAAIGGAAQAFGGLDILVQNVSAMAVQMRQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNG-GPQ-PYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAAPKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQRVQF 762
            MDLGLKGKKA VTG +RGIG  IA LL  EG D+GICAR A  ++E VA  +  G +AFG+  D+  DG  L + +   A+A GGL+I + NVSA  V   +  W    ++D+LGT R  +AA+P+L+KS AG+IVV+GS AAV   G GP+  YG++KAA++ Y+  LA  L  +N+RAN VSPG V+F+GGVW+ V+Q  P+R+ + + RNPMGRM TPEEVANA VFLASP ASFITG NLI DG  TQRVQF
Sbjct:    1 MDLGLKGKKAIVTGGTRGIGRAIANLLTEEGCDIGICARTAAQIEEAVASFRAKGVKAFGSVVDVA-DGTQLTSFVKSTAEALGGLNIFISNVSAFGVSNDEATWKKSLEIDVLGTFRGCEAAVPFLEKSGAGAIVVVGSAAAVEVGGLGPRGAYGSVKAAILPYIKSLARDLAVKNVRANVVSPGTVYFKGGVWNMVEQNMPERYRQALGRNPMGRMGTPEEVANAVVFLASPRASFITGTNLICDGCITQRVQF 255          
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Match: A0A839ZC88_9HYPH (3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Angulomicrobium tetraedrale TaxID=217068 RepID=A0A839ZC88_9HYPH)

HSP 1 Score: 260 bits (665), Expect = 4.010e-84
Identity = 139/253 (54.94%), Postives = 181/253 (71.54%), Query Frame = 1
Query:    1 MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAELKGLGARAFGAPADLKGDGADLKAAIGGAAQAFGGLDILVQNVSAMAVQMRQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNGGPQPYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAAPKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQRVQ 759
            MDLGLKG +A VTG ++GIGL IA  LAAEGA+V +C+R AG  + T A L   G   +GA  D+  DG  L A +  A+  FGGLDI+V NVSA+A+   ++ W+ G+Q D++GT+R VDAA+P+L+KS A +IV I S++    +    PYG  KAALVHY  GLA +L P+ IRANTVSPG  +F+GGVWDQ++Q  P  F++ +A NP GRMATP+E+ANAAVFLASPAASF+ G NL+VDG  T+ VQ
Sbjct:    1 MDLGLKGLRAIVTGGTKGIGLAIAETLAAEGANVALCSRSAGDAEATAARLAEKGVETYGAGVDVA-DGPALAAFVEKASARFGGLDIVVANVSALAIGNDEESWNKGFQTDLMGTVRLVDAALPYLEKSGAAAIVTISSVSGREIDFAAGPYGVFKAALVHYTQGLAFTLAPKKIRANTVSPGNTYFKGGVWDQIEQGNPALFEQALALNPTGRMATPQEIANAAVFLASPAASFVYGTNLVVDGALTRGVQ 252          
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Match: A0A2D7FAM0_9HYPH (3-ketoacyl-ACP reductase n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FAM0_9HYPH)

HSP 1 Score: 259 bits (662), Expect = 1.140e-83
Identity = 142/254 (55.91%), Postives = 178/254 (70.08%), Query Frame = 1
Query:    1 MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAELKGLGARAFGAPADLKGDGADLKAAIGGAAQAFGGLDILVQNVSAMAVQMRQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNGGPQPYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAAPKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQRVQF 762
            MDLGLKGK+A VTG +RGIG RI  LL AEG  VG CARDA  V+  V  L G G +  G  AD+  D   L   I   A   GGLDI++ N SA+     +  W  G +VDILGT+RTV++AMP+L+KS A +IV I S AAV+ +GG + Y  +KAAL+ Y+SGL+ +LG + IRANTVSPGA++FEGG+WD  K+ AP  +   VAR+PMGR+ TPEEVANA VFLASPAAS+I+G NL+VDG  T R+QF
Sbjct:    1 MDLGLKGKRAIVTGGTRGIGRRIVDLLVAEGCHVGFCARDAAEVERAVGALGGGGQQIIGGTADVASD-TQLSQWIANTADTLGGLDIVIPNASALGGGADEAAWRKGLEVDILGTVRTVESAMPYLEKSDAAAIVAISSTAAVNTSGGVRAYSGVKAALISYMSGLSTNLGVKGIRANTVSPGAIYFEGGIWDVRKREAPDAYAAAVARSPMGRLGTPEEVANAVVFLASPAASYISGTNLVVDGAQTTRIQF 253          
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Match: UPI001F30BD33 (SDR family oxidoreductase n=2 Tax=Jiella TaxID=1775688 RepID=UPI001F30BD33)

HSP 1 Score: 259 bits (661), Expect = 1.620e-83
Identity = 143/254 (56.30%), Postives = 180/254 (70.87%), Query Frame = 1
Query:    1 MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAELKGLGARAFGAPADLKGDGADLKAAIGGAAQAFGGLDILVQNVSAMAVQMRQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNGGPQPYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAAPKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQRVQF 762
            MDL L+G+KA VTG ++GIGL IA  LAAEGA V ICAR+A  V+  V  L   G  AFG   D+  DG  L A +  AA A GGLDI+V NVSA+AV   ++ W  G++ D++GT+R VDAAMP L+KS A +IV I S++    +    PYGA KAAL+HY  GLA++L  +NIRANTVSPG  +F+GGVWDQ++   P+ F  ++A NP GRMATPEE+AN AVFLASPAASFITG NL++DG  T+ VQF
Sbjct:    1 MDLKLQGRKAVVTGGTKGIGLAIAETLAAEGAAVAICARNAAEVEAEVERLAAKGVAAFGKAVDVA-DGPALTAFVTEAANALGGLDIVVANVSALAVGGDEESWKKGFETDLMGTVRLVDAAMPLLEKSDAAAIVTISSVSGREIDFAAGPYGAFKAALIHYTQGLAYNLAAKNIRANTVSPGNTYFKGGVWDQIETGNPELFRASLALNPTGRMATPEEIANGAVFLASPAASFITGTNLVIDGALTRGVQF 253          
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Match: A0A1G4TYQ0_9HYPH (3-oxoacyl-[acyl-carrier protein] reductase n=6 Tax=Xanthobacteraceae TaxID=335928 RepID=A0A1G4TYQ0_9HYPH)

HSP 1 Score: 258 bits (658), Expect = 4.610e-83
Identity = 140/254 (55.12%), Postives = 178/254 (70.08%), Query Frame = 1
Query:    1 MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAELKGLGARAFGAPADLKGDGADLKAAIGGAAQAFGGLDILVQNVSAMAVQMRQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNGGPQPYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAAPKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQRVQF 762
            MDLGLKG +A V+G ++GIGL IA  LAAEG DV +C+R  G  Q T A L   G +  G  AD+  DGA L   +  AA AFGGLDI+V NVSA+AV   ++ W  G+  D++GT+R V+AAMP+L++S+AGSIV I S++    +    PYG  KAAL+HY  GLA+ L P+ IRANTVSPG  +F+GG+W+Q+K   P  + E +A NP GRMAT +EVANAAVFLASPAASFI G NL+VDG  T+ VQF
Sbjct:    1 MDLGLKGLRAVVSGGTKGIGLAIAETLAAEGCDVAVCSRHDGEAQATAARLAEAGVKTLGVGADVS-DGAALAGFVEKAASAFGGLDIVVANVSALAVGHEEEHWKKGFDTDLMGTVRLVNAAMPYLEQSAAGSIVTISSVSGREIDFACGPYGVFKAALIHYTQGLAYQLAPKKIRANTVSPGNTYFDGGIWNQIKDGNPALYAEALALNPTGRMATAQEVANAAVFLASPAASFIYGTNLVVDGALTRGVQF 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6593.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TT24_9PROT6.610e-13479.843-ketoacyl-ACP reductase n=1 Tax=Alphaproteobacter... [more]
A0A352KCY2_9PROT3.130e-11066.933-ketoacyl-ACP reductase n=5 Tax=Alphaproteobacter... [more]
A0A1Q7WT89_9PROT2.450e-8557.593-ketoacyl-ACP reductase n=1 Tax=Alphaproteobacter... [more]
A0A0Q6EYK2_9HYPH6.990e-8556.693-ketoacyl-ACP reductase n=1 Tax=Aurantimonas sp. ... [more]
A0A2E5PNU4_9PROT1.410e-8457.873-ketoacyl-ACP reductase n=1 Tax=Rhodospirillaceae... [more]
UPI001BC240502.130e-8455.47SDR family oxidoreductase n=1 Tax=Deltaproteobacte... [more]
A0A839ZC88_9HYPH4.010e-8454.943-oxoacyl-[acyl-carrier protein] reductase n=1 Tax... [more]
A0A2D7FAM0_9HYPH1.140e-8355.913-ketoacyl-ACP reductase n=2 Tax=Hyphomicrobiaceae... [more]
UPI001F30BD331.620e-8356.30SDR family oxidoreductase n=2 Tax=Jiella TaxID=177... [more]
A0A1G4TYQ0_9HYPH4.610e-8355.123-oxoacyl-[acyl-carrier protein] reductase n=6 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6593contigP-wetherbeei_contig6593:865..1629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1168059.KB899087_gene4441
Preferred nameMA20_08760
PFAMsadh_short_C2
Model size765
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00029,RC00117
KEGG koko:K00059
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.23e-82
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MW46@1224|Proteobacteria,2TUTU@28211|Alphaproteobacteria,3F0MS@335928|Xanthobacteraceae
EC1.1.1.100
DescriptionKR domain
Cds size765
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.1523628-CDS-P-wetherbeei_contig6593:864..16291683186924.1523628-CDS-P-wetherbeei_contig6593:864..1629Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6593 865..1629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6593.2.1prot_P-wetherbeei_contig6593.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6593 865..1629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6593.2.1

>prot_P-wetherbeei_contig6593.2.1 ID=prot_P-wetherbeei_contig6593.2.1|Name=mRNA_P-wetherbeei_contig6593.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MDLGLKGKKAFVTGASRGIGLRIARLLAAEGADVGICARDAGAVQETVAE
LKGLGARAFGAPADLKGDGADLKAAIGGAAQAFGGLDILVQNVSAMAVQM
RQKDWDAGYQVDILGTLRTVDAAMPWLQKSSAGSIVVIGSIAAVSGNGGP
QPYGALKAALVHYVSGLAHSLGPQNIRANTVSPGAVFFEGGVWDQVKQAA
PKRFDETVARNPMGRMATPEEVANAAVFLASPAASFITGVNLIVDGGTTQ
RVQF*
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mRNA from alignment at P-wetherbeei_contig6593:865..1629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6593.2.1 ID=mRNA_P-wetherbeei_contig6593.2.1|Name=mRNA_P-wetherbeei_contig6593.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig6593:865..1629+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCTGGGGTTGAAGGGTAAAAAGGCTTTCGTAACCGGGGCGAGCCG GGGCATTGGCCTGCGCATCGCCCGTCTTCTGGCGGCCGAGGGTGCAGATG TCGGGATTTGCGCCCGTGATGCGGGGGCCGTCCAGGAAACTGTCGCGGAA TTAAAGGGACTGGGGGCCAGAGCTTTTGGCGCTCCAGCAGACCTGAAAGG CGACGGCGCCGATCTCAAAGCCGCCATTGGTGGCGCGGCACAGGCATTCG GTGGGCTGGATATTCTGGTACAGAATGTCAGCGCCATGGCGGTGCAGATG CGCCAGAAAGACTGGGACGCCGGCTATCAGGTGGATATTCTGGGCACCCT GCGCACGGTGGACGCCGCCATGCCCTGGCTGCAAAAATCATCCGCCGGAT CCATTGTGGTGATCGGTTCCATCGCCGCCGTTTCCGGCAATGGGGGGCCG CAGCCCTATGGCGCGCTCAAGGCGGCGCTGGTGCATTATGTCAGCGGTCT GGCGCATTCGCTGGGGCCGCAAAATATTCGCGCCAATACGGTCTCGCCCG GTGCGGTATTTTTCGAAGGCGGTGTGTGGGACCAGGTAAAACAGGCGGCC CCAAAACGCTTTGACGAAACCGTGGCGCGCAATCCCATGGGCCGCATGGC GACGCCCGAAGAGGTGGCGAATGCCGCCGTTTTCCTGGCCAGCCCGGCGG CAAGCTTCATCACCGGGGTAAATCTGATTGTCGATGGCGGCACAACGCAA CGGGTACAGTTTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6593:865..1629+

>mRNA_P-wetherbeei_contig6593.2.1 ID=mRNA_P-wetherbeei_contig6593.2.1|Name=mRNA_P-wetherbeei_contig6593.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig6593:865..1629+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCTGGGGTTGAAGGGTAAAAAGGCTTTCGTAACCGGGGCGAGCCG
GGGCATTGGCCTGCGCATCGCCCGTCTTCTGGCGGCCGAGGGTGCAGATG
TCGGGATTTGCGCCCGTGATGCGGGGGCCGTCCAGGAAACTGTCGCGGAA
TTAAAGGGACTGGGGGCCAGAGCTTTTGGCGCTCCAGCAGACCTGAAAGG
CGACGGCGCCGATCTCAAAGCCGCCATTGGTGGCGCGGCACAGGCATTCG
GTGGGCTGGATATTCTGGTACAGAATGTCAGCGCCATGGCGGTGCAGATG
CGCCAGAAAGACTGGGACGCCGGCTATCAGGTGGATATTCTGGGCACCCT
GCGCACGGTGGACGCCGCCATGCCCTGGCTGCAAAAATCATCCGCCGGAT
CCATTGTGGTGATCGGTTCCATCGCCGCCGTTTCCGGCAATGGGGGGCCG
CAGCCCTATGGCGCGCTCAAGGCGGCGCTGGTGCATTATGTCAGCGGTCT
GGCGCATTCGCTGGGGCCGCAAAATATTCGCGCCAATACGGTCTCGCCCG
GTGCGGTATTTTTCGAAGGCGGTGTGTGGGACCAGGTAAAACAGGCGGCC
CCAAAACGCTTTGACGAAACCGTGGCGCGCAATCCCATGGGCCGCATGGC
GACGCCCGAAGAGGTGGCGAATGCCGCCGTTTTCCTGGCCAGCCCGGCGG
CAAGCTTCATCACCGGGGTAAATCTGATTGTCGATGGCGGCACAACGCAA
CGGGTACAGTTTTAA
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