mRNA_P-wetherbeei_contig659.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig659.4.1
Unique NamemRNA_P-wetherbeei_contig659.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig659.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig659contigP-wetherbeei_contig659:1853..5301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLY1
Model size2172
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue5.3e-05
EggNOG OGs29J8N@1|root,2RSGS@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_000150.1
Descriptionfunction. Source PGD
Cds size1107
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig659.4.1prot_P-wetherbeei_contig659.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig659 2775..5158 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.746581-UTR-P-wetherbeei_contig659:1852..27741683186923.746581-UTR-P-wetherbeei_contig659:1852..2774Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig659 1853..2774 -
1683186923.8241842-UTR-P-wetherbeei_contig659:5158..53011683186923.8241842-UTR-P-wetherbeei_contig659:5158..5301Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig659 5159..5301 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.7581465-CDS-P-wetherbeei_contig659:2774..29281683186923.7581465-CDS-P-wetherbeei_contig659:2774..2928Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig659 2775..2928 -
1683186923.766907-CDS-P-wetherbeei_contig659:3277..36811683186923.766907-CDS-P-wetherbeei_contig659:3277..3681Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig659 3278..3681 -
1683186923.775876-CDS-P-wetherbeei_contig659:3835..39491683186923.775876-CDS-P-wetherbeei_contig659:3835..3949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig659 3836..3949 -
1683186923.7852473-CDS-P-wetherbeei_contig659:4369..44291683186923.7852473-CDS-P-wetherbeei_contig659:4369..4429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig659 4370..4429 -
1683186923.798325-CDS-P-wetherbeei_contig659:4542..46081683186923.798325-CDS-P-wetherbeei_contig659:4542..4608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig659 4543..4608 -
1683186923.807821-CDS-P-wetherbeei_contig659:4706..48161683186923.807821-CDS-P-wetherbeei_contig659:4706..4816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig659 4707..4816 -
1683186923.8160346-CDS-P-wetherbeei_contig659:4959..51581683186923.8160346-CDS-P-wetherbeei_contig659:4959..5158Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig659 4960..5158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig659.4.1

>prot_P-wetherbeei_contig659.4.1 ID=prot_P-wetherbeei_contig659.4.1|Name=mRNA_P-wetherbeei_contig659.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=369bp
MATAEDPQADGHVHHMMNGATSCSGEPWTGGTCLCVGKHETVRVKMRMGP
GPVKEGGVGRIIAYNAENDSFTVKYVLGGMEKNIERKYIICNVEGGTKRH
CHKAPEDSNALFLKVAKTKRASQPKKPRTAGGPTEAAKAAKKRPQIAKEG
KPARPQAPAAVVAAAVSKVAKGLNAPRQKPLGQATGIIVPAIPAATAAAT
SNAGKENVEALAAACKPAKPAAADAATVVPRPVKKSVTQVPMQLAPTAAL
AKPLKKRLVVTPPPQEQPRAAVIKPEPEPELVPETAVKAPALPALDHVRL
DQFRLVLKGRLITASTGGGDGAVPVSALIDLEPQDGGAPFTLAERDAFLA
ILNRDNAVFVDDGCCYEV*
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mRNA from alignment at P-wetherbeei_contig659:1853..5301-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig659.4.1 ID=mRNA_P-wetherbeei_contig659.4.1|Name=mRNA_P-wetherbeei_contig659.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3449bp|location=Sequence derived from alignment at P-wetherbeei_contig659:1853..5301- (Phaeothamnion wetherbeei SAG_119_79)
CGCTTTAGGAGCGCCGACGCAAAAAGTCAAGCGGAAAACCTTATCGGATA
GTGGTAGGGCCTGTTGGCGCGAAAGGCGCCCCGTCCCGTACCATATTCGA
AGAGAACAGACGACGGTTGGTCTTAATCATAAAAGAGAGCAAAATGGCGA
CTGCGGAGGATCCCCAGGCGGACGGTCACGTCCACCACATGATGAACGGT
GCTACCTCGTGTAGCGGGGAGCCGTGGACCGGCGGCACCTGCCTCTGCGT
AGGAAAGCACGAGACCGTCAGGGTGAAGATGCGCATGGGCCCTGGCCCCG
TGAAGGAAGGCGGCGTCGGCAGGATTATAGCGTACAATGCAGGTAACGTC
TCGAGGTGAAAGCGCTACCATGCTTTCCGTTGCTTATCAACTCTCCTCTT
CCTTCTTATGCGCCACCAAGCGATCTTATTGCGTCGGGGCGGATCCCGAG
TCAGTCGCTCATTCTCCACCTCGTTCCCGTCGCAGAGAACGATTCGTTCA
CGGTGAAGTATGTGCTCGGAGGCATGGAGAAGAATATCGAGAGGAAGTAC
ATCATCTGCAACGTCGAAGGGGGCACCAAGCGCCACTGCCACAAGGTAAT
TCGCGTACAGTGGAGCAGGGCCTGCCGAAACGCGATCGGCGCCACGACCT
TTTCTAACGTCCATGTCTCTTTCTTGCTGTCGCGGCGCGCCAGGCTCCGG
AGGACTCGAACGCCCTTTTCCTCAAGGTCGCCAAGACAAAGAGAGCGTCG
CAACCCAAGGTGCGCCCCAATTACCGCCAAAACCGAAACCCGTGTCCGCT
GCATCGCCTTGAATCGCTCCGTCGCCAAGAAGCGTGCGTGACCCGCCCCT
TCTTGCCGATTTCTGCCCGCAGAAGCCGCGCACGGCTGGTGGCCCCACCG
AGGCCGCCAAGGCCGCGAAGAAGAGGCCCCAGGTGCGTATTATCGAGACG
AGGTGGGCCACGGGGCACGTTGGAGTGCCCCTCTCGGTTTGAAGCCAGAG
AACCGCAGACTTTACCTATTTTGTACATGATACCGAGCGAAACTTCTCTA
CACCAATGTTTCTGACGCTTAACCCATTTTGGCTACCTGCCAGAACCCGT
CCGACACTTTTTCCGGCGCCGATTTACTCGTTTCCGGTCGTTGCTCGTTT
CCTCCCGCTCTTCGCCGTGACTACCATTCGCGCACTTTGCATGCCTGCCT
CCATCAAATAATTCGTTAAGGTACTCCCACCGACGCATGTGACGTCCGCT
CCGTTGCGTTGCTGCTTCCGAACCCGTTTCTTCGGCGTTTCCGCACTTCT
CTGCAATTGCACCCACCTTTGGTTGCGGTCCTTTCCACACGGTTTCTTGC
AGATCGCCAAGGAGGGGAAGCCCGCGAGGCCGCAGGCGCCCGCCGCCGTC
GTCGCCGCCGCCGTCTCCAAGGTGGCGAAGGGCCTCAACGCGCCGCGGCA
GAAGCCGCTGGGCCAGGTGCGACTAAAGGCGCCACCTGTACTCTTCTTTC
CGGTTTTGCTGCACCTGGTGGCCGATTTCGGGCTCTGCAGCCGCCCCGGT
GTCTTTTGGCGGCCAACCGGGTGCTTCGCGACCGCTTTTGTGTCCACTTT
CTTGGTTCCCGTGCCGGCAGGCCACCGGCATCATTGTGCCGGCCATACCT
GCCGCCACCGCCGCCGCCACGAGCAATGCGGGCAAGGAGAACGTCGAGGC
GCTCGCGGCGGCTTGCAAGCCCGCCAAGCCCGCGGCGGCTGACGCCGCCA
CAGTAGTCCCTAGGCCGGTGAAAAAGTCGGTGACACAGGTGCCGATGCAG
CTGGCCCCGACGGCCGCGCTTGCCAAGCCGCTCAAGAAGCGGCTCGTCGT
AACGCCACCGCCGCAGGAGCAGCCGCGTGCCGCCGTCATAAAGCCGGAGC
CCGAACCCGAGCTGGTGCCAGAGACCGCCGTGAAGGCGCCAGCATTGCCC
GCTTTGGACCACGTGCGGCTGGACCAGTTCCGGCTAGTCCTGAAGGGACG
GCTCATCACGGCGAGCACGGGAGGGTGAGATAAGCGGCAACCGCCTAAAG
CATCCGGCGGCGGTTCGGACGCGCTGAGCCTTCGTTGCCTTGATTGATCA
GAAAACTGTTGACGGGGGAGTCCAGTTGAGGTTTAGGAGAACTGCGTGGC
TTTTGCTGGGCTAGGTATGCACCGAGATTTTCACCGTGCTGCCGCTGGCC
GCCCTATCTAACCGCCACGGTGAGTGCGCTTGTTTGCGTGTTCCCTTTTC
GGTCCTTCACCGCTGGCCAACCCCCTATGCGGCCGCCTTCACTCCGCCCG
CCCCTGCTGTTGTCGCCTCGGCCGCCGCCCTCGCCGATGCCGCCGTCGCC
ACTCTTGCCGCTGCGCATGATAGAGGGGACGGCGCTGTTCCTGTGTCGGC
GCTCATCGATCTTGAACCGCAGGATGGCGGGGCACCATTCACGCTGGCGG
AGCGCGATGCATTCCTCGCCATCCTGAATCGCGACAACGCCGTCTTTGTG
GACGACGGCTGCTGCTACGAGGTGTAATAGAGAGCTTCCAGCGGCTGGCC
AGCAGAGTCGAGTTCCGGCGGGTGCCGACCACCGGCACGTACGCCCACAG
CTCCATGCCGTTCGGCGCGTTGACCAGCGGCCGCGGGCCAGCGGTCTCGT
CCGGTGGCAGCATTGGCTGGTGGCAGCGGCGCTAGCGGCGCCGGCATAGT
CGGGCAGTACCCGCTGGCATCAACGTCTCAGTTACCTGCTGCGACGACGA
TGACAAAGAGATGGCTTCGTTCTGGGCGAGGCTGATAAGAAACAACTAGA
ATGTGGTATCGGAAACCGGGCTGGGGGCGCTGGGCATTCGGTCTGACGGC
GTTGTTTCTGCTATGGTCGTGGCAGGGGCAGCGAGCACGGCTTCCAGGGA
TGAGGCACCTTTGGTTTTGAAGCCCGGTCCTAGATCCGGGTTTCTCTTCC
CGGCGATGGCGACTGGAGTTTCGGGTACAGGAGTTGAGGGGGGAGAGGGG
CGGCGCTCCTTGCTGCTCTACATATTGGTCCGCTGGAATGGGTGCGGCGC
CATTTGGGGTTCGAGGGCAGGACGATCGGAAGGTGAGCGGCGATGGCAGG
AGCAACGCGACAGCAGGGGAAGGCGGAGCGGCCGGCAGCTCGATCACCGC
CGCGACGATGGCGGCGGCGGTGGCCATGATGGCGGTAGCAGCGGCGGCGA
TGGCGGAGGCGGTGCCGCTGTTCCTTGGGCCGCTGTCGTCGATGTTAATA
AGGGGGGGCGCAGGGTGGTTGGAGTTTTTTTCCTTCTTGGTTAGGTTGGA
AAGTGAAATGGTCAAGGCGGGAGAGCGAACAGGTATGCACTTGACGCAGG
AGATAGGGGCATTGTGAAGGAGGTGCGGGCTTCGCGTCGCTGCTAAGCAA
TTCATCGATCCCCTGAAGGCAAAGAGAGAACATAGGCAATGTGAACGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig659:1853..5301-

>mRNA_P-wetherbeei_contig659.4.1 ID=mRNA_P-wetherbeei_contig659.4.1|Name=mRNA_P-wetherbeei_contig659.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1107bp|location=Sequence derived from alignment at P-wetherbeei_contig659:1853..5301- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACTGCGGAGGATCCCCAGGCGGACGGTCACGTCCACCACATGAT
GAACGGTGCTACCTCGTGTAGCGGGGAGCCGTGGACCGGCGGCACCTGCC
TCTGCGTAGGAAAGCACGAGACCGTCAGGGTGAAGATGCGCATGGGCCCT
GGCCCCGTGAAGGAAGGCGGCGTCGGCAGGATTATAGCGTACAATGCAGA
GAACGATTCGTTCACGGTGAAGTATGTGCTCGGAGGCATGGAGAAGAATA
TCGAGAGGAAGTACATCATCTGCAACGTCGAAGGGGGCACCAAGCGCCAC
TGCCACAAGGCTCCGGAGGACTCGAACGCCCTTTTCCTCAAGGTCGCCAA
GACAAAGAGAGCGTCGCAACCCAAGAAGCCGCGCACGGCTGGTGGCCCCA
CCGAGGCCGCCAAGGCCGCGAAGAAGAGGCCCCAGATCGCCAAGGAGGGG
AAGCCCGCGAGGCCGCAGGCGCCCGCCGCCGTCGTCGCCGCCGCCGTCTC
CAAGGTGGCGAAGGGCCTCAACGCGCCGCGGCAGAAGCCGCTGGGCCAGG
CCACCGGCATCATTGTGCCGGCCATACCTGCCGCCACCGCCGCCGCCACG
AGCAATGCGGGCAAGGAGAACGTCGAGGCGCTCGCGGCGGCTTGCAAGCC
CGCCAAGCCCGCGGCGGCTGACGCCGCCACAGTAGTCCCTAGGCCGGTGA
AAAAGTCGGTGACACAGGTGCCGATGCAGCTGGCCCCGACGGCCGCGCTT
GCCAAGCCGCTCAAGAAGCGGCTCGTCGTAACGCCACCGCCGCAGGAGCA
GCCGCGTGCCGCCGTCATAAAGCCGGAGCCCGAACCCGAGCTGGTGCCAG
AGACCGCCGTGAAGGCGCCAGCATTGCCCGCTTTGGACCACGTGCGGCTG
GACCAGTTCCGGCTAGTCCTGAAGGGACGGCTCATCACGGCGAGCACGGG
AGGAGGGGACGGCGCTGTTCCTGTGTCGGCGCTCATCGATCTTGAACCGC
AGGATGGCGGGGCACCATTCACGCTGGCGGAGCGCGATGCATTCCTCGCC
ATCCTGAATCGCGACAACGCCGTCTTTGTGGACGACGGCTGCTGCTACGA
GGTGTAA
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