mRNA_P-wetherbeei_contig6582.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6582.1.1
Unique NamemRNA_P-wetherbeei_contig6582.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6582.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6582contigP-wetherbeei_contig6582:1360..2877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog232348.ADXL01000057_gene2321
PFAMsSulfotransfer_1
Model size821
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000179
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,1G2V9@1117|Cyanobacteria,1H0KA@1129|Synechococcus
DescriptionSulfotransferase domain
Cds size483
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.4905474-CDS-P-wetherbeei_contig6582:1359..16681683186923.4905474-CDS-P-wetherbeei_contig6582:1359..1668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6582 1360..1668 -
1683186923.5059252-CDS-P-wetherbeei_contig6582:2137..22621683186923.5059252-CDS-P-wetherbeei_contig6582:2137..2262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6582 2138..2262 -
1683186923.5164785-CDS-P-wetherbeei_contig6582:2474..25231683186923.5164785-CDS-P-wetherbeei_contig6582:2474..2523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6582 2475..2523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.5270422-UTR-P-wetherbeei_contig6582:2523..25591683186923.5270422-UTR-P-wetherbeei_contig6582:2523..2559Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6582 2524..2559 -
1683186923.53728-UTR-P-wetherbeei_contig6582:2576..28771683186923.53728-UTR-P-wetherbeei_contig6582:2576..2877Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6582 2577..2877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6582.1.1prot_P-wetherbeei_contig6582.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6582 1360..2523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6582.1.1

>prot_P-wetherbeei_contig6582.1.1 ID=prot_P-wetherbeei_contig6582.1.1|Name=mRNA_P-wetherbeei_contig6582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MLNVSGGLPYSIDASPGYVYSPRPVLANLRRLNPEAGVILMLREPVARAL
SHYNYMTKAEKNPFGPTMRPFAEIVRFELDALQDEPAATAVADMLRAAGS
NADGSDGSGDGDGRKTLAAWGRAWAHLRHKAAAAGHPYAVQSPVLSSLYG
PALHFLQDWAT
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mRNA from alignment at P-wetherbeei_contig6582:1360..2877-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6582.1.1 ID=mRNA_P-wetherbeei_contig6582.1.1|Name=mRNA_P-wetherbeei_contig6582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1518bp|location=Sequence derived from alignment at P-wetherbeei_contig6582:1360..2877- (Phaeothamnion wetherbeei SAG_119_79)
ATTAAACTAAGCAGTGGCATGCAACTCGATCCCCTCGTCCTTTTTGTGTA
TTTCGCGCTCTGTTACTACGGCAGTGCGTACAACTACACCATCAATGTAG
CCTGGCGCCGTACCGAACGAAGAAAGCCGCTTCCTCGCGTCAAGGCCGAG
AACGTGCCTTCCCTGGCTCGCCACCCGCCTCTCGCTCGGCACCAGCATCC
AACCGTGGTGATCATCGGCGTGGCGAAATGCGGGACGACGGGAGTCCAGT
CCCAGGTTGTGCGAACGCTCGAAGAGGATTGGGTAAACCGCCCGCTAACG
AAGGAGATCCACCTGCTCTCCAGGAAAAGCTTGAATGAAACCGACTATTT
TCGGATGCTGAACGTGTCGGGCGGCCTGCCGTACTCTATCGACGCGTCAC
CTGGTACGTTTCAAGGAAAAACAATATTCCTTTCCAGGAAGATTTTCACT
CCCACCGGCGTTCGCTAAGCATAACGATTCATTGTCCGCACTTCAACTGA
TAAATATAAAGGAAACTGCTCCACATCTGAATGAATAACTTCTGAAACTG
TCGGAAAATGATGAAACACCATGTCGAGTCTTCTTCTCACTGGCAATGAT
TTTACAAAACCTCAGGTTACGTCTACAGCCCGCGGCCCGTATTGGCCAAC
CTGCGGCGGCTGAACCCCGAGGCCGGCGTGATTTTAATGCTTCGGGAGCC
CGTCGCGAGGGCGTTAAGCCACTACAACTACATGACCAAAGTGCGTTTGG
AGCATCGGTCGGTCGGCCAGGGCGGAATATTCCCTGAAGATCACAGGAAT
CCGAAATTCTGTTCGCTCCTTCGTCTCAGAAACGCATTTGTGCGCTTCGT
GTGCACCACGTCTCAGAACGTACTAGGTCATACCCTCGCCAATCATGAGC
AGAGGACCGACCGCCTCGTGCAGCAGCGGAGGCGCCGGAGCTAATTGTTT
GTAGAGATTTCCATCATGGCGCAGCTCTTGTGAACGGGTTCGTCGCCATT
TTAAGCGCTCATAGAATCCTCTGCTTTTCTTTTTTCCCTCTTTAGTCTGA
CAGATTCTTGAATCTAATGCCATTCAATGCGTTTCTCGACTCGACAGTAA
CTACAGAAACGAATACGGGAATGCATCAGTCTATGACACAGCCACCTCAA
ACCAGAAGCCTCCTTTTTTCCTCCGCGCATTCTTTCTATCTTTCGACGTC
TTCCCGCAGGCGGAAAAGAACCCTTTTGGCCCGACGATGCGCCCCTTCGC
GGAGATCGTCCGCTTCGAGCTCGACGCACTCCAGGATGAGCCCGCGGCGA
CGGCGGTGGCGGACATGCTAAGGGCGGCCGGCTCCAATGCCGATGGCAGC
GATGGCAGCGGCGACGGCGACGGCCGGAAGACGCTGGCCGCCTGGGGCCG
GGCCTGGGCCCACCTGCGGCACAAGGCCGCGGCGGCGGGCCACCCCTATG
CCGTCCAGAGCCCTGTGCTGAGCAGCCTGTATGGGCCGGCGCTGCACTTC
CTGCAGGACTGGGCGACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6582:1360..2877-

>mRNA_P-wetherbeei_contig6582.1.1 ID=mRNA_P-wetherbeei_contig6582.1.1|Name=mRNA_P-wetherbeei_contig6582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig6582:1360..2877- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAACGTGTCGGGCGGCCTGCCGTACTCTATCGACGCGTCACCTGG
TTACGTCTACAGCCCGCGGCCCGTATTGGCCAACCTGCGGCGGCTGAACC
CCGAGGCCGGCGTGATTTTAATGCTTCGGGAGCCCGTCGCGAGGGCGTTA
AGCCACTACAACTACATGACCAAAGCGGAAAAGAACCCTTTTGGCCCGAC
GATGCGCCCCTTCGCGGAGATCGTCCGCTTCGAGCTCGACGCACTCCAGG
ATGAGCCCGCGGCGACGGCGGTGGCGGACATGCTAAGGGCGGCCGGCTCC
AATGCCGATGGCAGCGATGGCAGCGGCGACGGCGACGGCCGGAAGACGCT
GGCCGCCTGGGGCCGGGCCTGGGCCCACCTGCGGCACAAGGCCGCGGCGG
CGGGCCACCCCTATGCCGTCCAGAGCCCTGTGCTGAGCAGCCTGTATGGG
CCGGCGCTGCACTTCCTGCAGGACTGGGCGACC
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