mRNA_P-wetherbeei_contig6581.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6581.1.1
Unique NamemRNA_P-wetherbeei_contig6581.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Match: A0A2Z6DZ58_HYDTE (Heat shock protein Hsp20 n=1 Tax=Hydrogenophilus thermoluteolus TaxID=297 RepID=A0A2Z6DZ58_HYDTE)

HSP 1 Score: 103 bits (256), Expect = 6.740e-26
Identity = 51/93 (54.84%), Postives = 70/93 (75.27%), Query Frame = 1
Query:   43 VSVDLPGVKKSDITVRVEDGVLRISAQRRQEAEEKDETFHRVERSFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEIQ 321
            +  DLPG+ K D+ V +E+GVL IS +R+QE EEKD+ +HRVER +G   RS  +PE+ADPD + A+F++GVL+V IGK+EA KP  K IEI+
Sbjct:   59 IKADLPGLAKDDVHVTLENGVLSISGERKQEKEEKDKKYHRVERVYGRFVRSFTLPEDADPDQISAQFKDGVLEVRIGKSEAVKP--KRIEIK 149          
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Match: A0A2V6FDT2_9BACT (Heat-shock protein Hsp20 n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6FDT2_9BACT)

HSP 1 Score: 103 bits (256), Expect = 6.920e-26
Identity = 51/98 (52.04%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   28 DKEWRVSVDLPGVKKSDITVRVEDGVLRISAQRRQEAEEKDETFHRVERSFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEIQ 321
            DKEW V  DLP +KK D+ V VE+GVL I+ +R+ E EEKD+ +HR+ERS+G   RS ++P+ AD   V AEF++GVLKV + K+E  KP  KA+E++
Sbjct:   54 DKEWLVKADLPEIKKEDVKVTVENGVLTITGERKFEKEEKDKKYHRIERSYGSFTRSFMLPDGADGVKVNAEFKDGVLKVHLPKSEKAKP--KAVEVK 149          
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Match: A0A832HSA0_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A832HSA0_9BACT)

HSP 1 Score: 102 bits (254), Expect = 1.590e-25
Identity = 48/98 (48.98%), Postives = 74/98 (75.51%), Query Frame = 1
Query:   28 DKEWRVSVDLPGVKKSDITVRVEDGVLRISAQRRQEAEEKDETFHRVERSFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEIQ 321
            DKE+ +  +LP VKK D++V VE+GVL I+ +R+ E EEK++ +HRVER++G  +RS +VPE+AD D V AEF++GVLKV + K+E  KP+   ++++
Sbjct:   59 DKEYLIKAELPEVKKEDVSVTVENGVLTIAGERKFEKEEKNKRYHRVERAYGRFERSFLVPEDADGDKVAAEFKDGVLKVHLAKSEKAKPRTIEVKVE 156          
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Match: A0A6N6PZI6_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A6N6PZI6_9BACT)

HSP 1 Score: 101 bits (251), Expect = 3.950e-25
Identity = 50/98 (51.02%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   28 DKEWRVSVDLPGVKKSDITVRVEDGVLRISAQRRQEAEEKDETFHRVERSFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEIQ 321
            +KEW V  DLP V+K D+ V VEDGVL ++ +RR E EEKD+ +HR+ERS+G   RS  +P+ AD   V AEF++GVL+V + KTE  KP  +A+E++
Sbjct:   54 EKEWLVKADLPEVRKEDVKVTVEDGVLTVAGERRFEKEEKDKKYHRIERSYGNFLRSFALPDAADAGKVTAEFKDGVLRVHLPKTEKAKP--QAVEVK 149          
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Match: A0A101I4A4_9BACT (Heat shock protein Hsp20 n=2 Tax=Bacteria candidate phyla TaxID=1783234 RepID=A0A101I4A4_9BACT)

HSP 1 Score: 100 bits (248), Expect = 1.060e-24
Identity = 49/100 (49.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:   19 AQMDKEWRVSVDLPGVKKSDITVRVEDGVLRISAQRRQEAEEKDETFHRVERSFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEI 318
            ++ DKE+ V+V+LPG+KK DIT+ +++ VL I  +R+ E EEK +TFHR+ERS+G   RSV +P+  D D+++A F++G+L +TI K E  K K K IEI
Sbjct:   49 SETDKEFFVTVELPGLKKEDITLSIDNNVLTIEGERKSEKEEKGKTFHRIERSYGKFYRSVTLPKKVDEDNIKASFKDGLLNITIPKVE--KEKVKNIEI 146          
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Match: A0A6M1RSR6_9BACT (Hsp20/alpha crystallin family protein n=2 Tax=Verrucomicrobia subdivision 3 TaxID=134621 RepID=A0A6M1RSR6_9BACT)

HSP 1 Score: 100 bits (248), Expect = 1.180e-24
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 1
Query:   28 DKEWRVSVDLPGVKKSDITVRVEDGVLRISAQRRQEAEEKDETFHRVERSFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEI 318
            DKE+ + V+LP V K D+ V VE G L IS +R+ E EEK+  +HRVER +G   RS  +PE+ADPD+VRAEF++GVL+V + K+E  +PK   +++
Sbjct:   56 DKEYLLKVELPEVSKDDVKVTVEGGTLTISGERKAEKEEKNRKYHRVERFYGRFVRSFTIPEDADPDNVRAEFKDGVLRVHLPKSEKARPKQIEVKV 152          
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Match: A0A139AE35_GONPJ (HSP20-like chaperone n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AE35_GONPJ)

HSP 1 Score: 100 bits (250), Expect = 1.730e-24
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 AIRFFSAQMDKEWRVSVDLPGVKKSDITVRVEDGVLRISAQRRQEAEEKDETFHRVERSFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEI 318
            A R   ++  K + V  DLPGVKK DI + +++ VL I A+R++E+E KDET H VERS+G  QR+  +PENA  D V A+F  GVL++TIGK E  KP  K IEI
Sbjct:   89 AFRVDVSETPKAYLVKADLPGVKKEDIHLTIDNNVLSIKAERKEESEVKDETHHVVERSYGSFQRAFRLPENAVQDQVDAKFDNGVLQLTIGKEEEKKPDAKRIEI 194          
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Match: A0A832HLP8_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A832HLP8_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 3.360e-24
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   28 DKEWRVSVDLPGVKKSDITVRVEDGVLRISAQRRQEAEEKDETFHRVERSFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEI 318
            D E+ + V+LP VKK D+ V VE G L IS +R+ E EEK   FHRVER +G  +RS  VP+NAD D+V+AEF++GVL+V + K E  +PK   +++
Sbjct:   56 DAEYLIKVELPEVKKEDVKVTVEGGTLTISGERKAEKEEKGRKFHRVERYYGRFERSFAVPDNADADNVKAEFKDGVLRVHLPKNEKARPKQIEVKV 152          
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Match: HSP11_OXYRB (18.3 kDa class I heat shock protein n=2 Tax=Atripliceae TaxID=1307774 RepID=HSP11_OXYRB)

HSP 1 Score: 98.6 bits (244), Expect = 5.870e-24
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 1
Query:   52 DLPGVKKSDITVRVEDG-VLRISAQRRQEAEEKDETFHRVERSFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEI 318
            DLPGVKK ++ V VEDG VLRIS QR +E EEK++T+HRVERS G   R   +PENA  D V+A    GVL VT+ K EAPKP+ KAI +
Sbjct:   71 DLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPKNEAPKPQVKAINV 160          
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Match: A0A3B8Q2D4_9BACT (Heat-shock protein Hsp20 n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3B8Q2D4_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 6.390e-24
Identity = 48/100 (48.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   19 AQMDKEWRVSVDLPGVKKSDITVRVEDGVLRISAQRRQEAEEKDETFHRVERSFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEI 318
            A+ DKEW V  DLP VKK D+ + VE+GVL I+ +R+ E EEK + +HR+ER++G   RS  +P+ AD   V AEF++GVLKV + K+E  KPK   +++
Sbjct:   51 AEDDKEWLVKADLPEVKKEDVKLTVENGVLTITGERKFEKEEKSKKYHRIERAYGNFLRSFTLPDAADAAKVTAEFKDGVLKVHLPKSEIAKPKSIEVKV 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6581.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6DZ58_HYDTE6.740e-2654.84Heat shock protein Hsp20 n=1 Tax=Hydrogenophilus t... [more]
A0A2V6FDT2_9BACT6.920e-2652.04Heat-shock protein Hsp20 n=1 Tax=Verrucomicrobia b... [more]
A0A832HSA0_9BACT1.590e-2548.98Hsp20/alpha crystallin family protein n=1 Tax=Verr... [more]
A0A6N6PZI6_9BACT3.950e-2551.02Hsp20/alpha crystallin family protein n=1 Tax=Verr... [more]
A0A101I4A4_9BACT1.060e-2449.00Heat shock protein Hsp20 n=2 Tax=Bacteria candidat... [more]
A0A6M1RSR6_9BACT1.180e-2449.48Hsp20/alpha crystallin family protein n=2 Tax=Verr... [more]
A0A139AE35_GONPJ1.730e-2450.94HSP20-like chaperone n=1 Tax=Gonapodya prolifera (... [more]
A0A832HLP8_9BACT3.360e-2449.48Hsp20/alpha crystallin family protein n=1 Tax=Verr... [more]
HSP11_OXYRB5.870e-2458.8918.3 kDa class I heat shock protein n=2 Tax=Atripl... [more]
A0A3B8Q2D4_9BACT6.390e-2448.00Heat-shock protein Hsp20 n=1 Tax=Verrucomicrobiale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6581contigP-wetherbeei_contig6581:39..362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog161934.XP_010691818.1
PFAMsHSP20
Model size324
Max annot lvl35493|Streptophyta
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0043621,GO:0044424,GO:0044464,GO:0050896
Exons1
Evalue3.94e-24
EggNOG OGsCOG0071@1|root,KOG0710@2759|Eukaryota,37ZRB@33090|Viridiplantae,3GPNX@35493|Streptophyta
DescriptionkDa class I heat shock
Cds size300
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.40458-UTR-P-wetherbeei_contig6581:38..621683186923.40458-UTR-P-wetherbeei_contig6581:38..62Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6581 39..62 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.4148674-CDS-P-wetherbeei_contig6581:62..3621683186923.4148674-CDS-P-wetherbeei_contig6581:62..362Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6581 63..362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6581.1.1prot_P-wetherbeei_contig6581.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6581 63..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6581.1.1

>prot_P-wetherbeei_contig6581.1.1 ID=prot_P-wetherbeei_contig6581.1.1|Name=mRNA_P-wetherbeei_contig6581.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
MDKEWRVSVDLPGVKKSDITVRVEDGVLRISAQRRQEAEEKDETFHRVER
SFGLVQRSVVVPENADPDDVRAEFREGVLKVTIGKTEAPKPKGKAIEIQ*
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mRNA from alignment at P-wetherbeei_contig6581:39..362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6581.1.1 ID=mRNA_P-wetherbeei_contig6581.1.1|Name=mRNA_P-wetherbeei_contig6581.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig6581:39..362+ (Phaeothamnion wetherbeei SAG_119_79)
GCCATCCGTTTTTTCTCCGCGCAGATGGACAAGGAGTGGCGCGTCTCTGT GGACCTGCCTGGCGTCAAGAAGTCCGACATCACCGTCCGCGTCGAGGACG GCGTCCTGCGCATATCCGCCCAGCGCCGCCAAGAGGCCGAGGAGAAGGAT GAGACTTTTCACCGCGTCGAGCGCAGCTTCGGGCTGGTGCAGCGGTCGGT GGTGGTGCCGGAGAACGCAGATCCGGACGACGTCCGGGCGGAGTTCCGGG AGGGCGTCCTGAAGGTGACCATTGGCAAGACAGAGGCGCCCAAACCTAAG GGCAAGGCCATCGAGATCCAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6581:39..362+

>mRNA_P-wetherbeei_contig6581.1.1 ID=mRNA_P-wetherbeei_contig6581.1.1|Name=mRNA_P-wetherbeei_contig6581.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig6581:39..362+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAAGGAGTGGCGCGTCTCTGTGGACCTGCCTGGCGTCAAGAAGTC
CGACATCACCGTCCGCGTCGAGGACGGCGTCCTGCGCATATCCGCCCAGC
GCCGCCAAGAGGCCGAGGAGAAGGATGAGACTTTTCACCGCGTCGAGCGC
AGCTTCGGGCTGGTGCAGCGGTCGGTGGTGGTGCCGGAGAACGCAGATCC
GGACGACGTCCGGGCGGAGTTCCGGGAGGGCGTCCTGAAGGTGACCATTG
GCAAGACAGAGGCGCCCAAACCTAAGGGCAAGGCCATCGAGATCCAGTGA
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