mRNA_P-wetherbeei_contig6578.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6578.1.1
Unique NamemRNA_P-wetherbeei_contig6578.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6578.1.1 vs. uniprot
Match: D7FZG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG1_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 2.190e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 3 
Query:  252 LQYAAKSTAVVRSAMKEPAKSKALAREVVHYNRNIFTAGVPSGK 383
            L+YA+K+T V+R A+KEPA+S ALARE V YNRN+F  G P GK
Sbjct:   16 LEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGK 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6578.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZG1_ECTSI2.190e-863.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6578contigP-wetherbeei_contig6578:133..968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size837
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionATPase, F1 complex, epsilon subunit, mitochondrial
Ec32 orthologEc-19_003180.1
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.2988646-UTR-P-wetherbeei_contig6578:132..4251683186923.2988646-UTR-P-wetherbeei_contig6578:132..425Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6578 133..425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.310248-CDS-P-wetherbeei_contig6578:425..9681683186923.310248-CDS-P-wetherbeei_contig6578:425..968Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6578 426..968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6578.1.1prot_P-wetherbeei_contig6578.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6578 426..968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6578.1.1

>prot_P-wetherbeei_contig6578.1.1 ID=prot_P-wetherbeei_contig6578.1.1|Name=mRNA_P-wetherbeei_contig6578.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MKEPAKSKALAREVVHYNRNIFTAGVPSGKSECEILLSSSEVAIRARSCR
LLPSLVSSLQCGVLGRAVKIFTPWRSFVSNCWSPIHLHRGMSHRTFISVS
GGRECKDGRVFLAEQRLDVATCAGLCMSLAGLIVLSDSVPFGFPYHVLCC
AQSRLRAFLKQHSSSSRQLHIPQRPSAAAPS
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mRNA from alignment at P-wetherbeei_contig6578:133..968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6578.1.1 ID=mRNA_P-wetherbeei_contig6578.1.1|Name=mRNA_P-wetherbeei_contig6578.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=836bp|location=Sequence derived from alignment at P-wetherbeei_contig6578:133..968+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGAAAAACGCAGCATGTCGGCCACCACCTTCTGGAGATTGGCTGGCAT
GACGTACCTCGAGGTGAGACCGATTTGCTATTCGGAATGGCAAGACCCAG
AGGGAGAAGAGGGAGAGGGGTAGGCACCCAGAGGTGTTGTTCCAGTCTTT
GGGAAATTCTCGTAAGGCGGCCTCTATACTTTGTCAAAGCATGATGTACT
ACATTGCCCCGGTTTGTATTTGTGTGACGAGAGGAGCACTCTAATTCCCG
TCTGCAGTACGCTGCCAAGTCCACCGCCGTCGTGCGCTCCGCGATGAAGG
AGCCCGCAAAGAGCAAGGCGCTCGCCCGCGAAGTCGTCCACTACAACCGC
AACATCTTCACCGCTGGAGTCCCCAGCGGCAAGAGTGAGTGCGAGATTCT
ACTCTCTTCTTCTGAAGTTGCCATACGAGCGAGGTCCTGCAGGTTGCTTC
CATCACTCGTTTCCTCATTGCAGTGCGGGGTGCTGGGTCGAGCTGTTAAA
ATTTTTACCCCTTGGCGGAGCTTCGTTAGCAACTGTTGGTCCCCAATCCA
CTTACATCGAGGCATGTCTCATCGAACATTCATATCCGTCTCTGGGGGCC
GTGAATGCAAAGACGGCCGTGTGTTTCTTGCCGAGCAACGTCTCGATGTT
GCCACTTGCGCTGGTTTGTGTATGTCTTTGGCTGGGCTCATCGTCCTTTC
TGACTCCGTGCCGTTTGGCTTCCCATACCATGTCCTTTGTTGTGCGCAGA
GCCGGTTGAGAGCTTTCTTGAAGCAGCACAGTAGCAGCAGCCGCCAGCTG
CACATTCCCCAGCGACCCTCGGCTGCGGCGCCTTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6578:133..968+

>mRNA_P-wetherbeei_contig6578.1.1 ID=mRNA_P-wetherbeei_contig6578.1.1|Name=mRNA_P-wetherbeei_contig6578.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig6578:133..968+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGAGCCCGCAAAGAGCAAGGCGCTCGCCCGCGAAGTCGTCCACTA
CAACCGCAACATCTTCACCGCTGGAGTCCCCAGCGGCAAGAGTGAGTGCG
AGATTCTACTCTCTTCTTCTGAAGTTGCCATACGAGCGAGGTCCTGCAGG
TTGCTTCCATCACTCGTTTCCTCATTGCAGTGCGGGGTGCTGGGTCGAGC
TGTTAAAATTTTTACCCCTTGGCGGAGCTTCGTTAGCAACTGTTGGTCCC
CAATCCACTTACATCGAGGCATGTCTCATCGAACATTCATATCCGTCTCT
GGGGGCCGTGAATGCAAAGACGGCCGTGTGTTTCTTGCCGAGCAACGTCT
CGATGTTGCCACTTGCGCTGGTTTGTGTATGTCTTTGGCTGGGCTCATCG
TCCTTTCTGACTCCGTGCCGTTTGGCTTCCCATACCATGTCCTTTGTTGT
GCGCAGAGCCGGTTGAGAGCTTTCTTGAAGCAGCACAGTAGCAGCAGCCG
CCAGCTGCACATTCCCCAGCGACCCTCGGCTGCGGCGCCTTCG
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