mRNA_P-wetherbeei_contig6561.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6561.1.1
Unique NamemRNA_P-wetherbeei_contig6561.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6561.1.1 vs. uniprot
Match: D8LNZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ6_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.070e-13
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 2 
Query:    5 LVEDLQGGATTLPAAQQTIRVLFSSLVQTRRNGKQSADAARELTLRLDVTSAALEAAREQARADKRSYDHRLTRLARDYEERLSGLINHTTMSRLLEAEAETAQNG 322
            ++E+L+ G + L  A+  IRVLFSSLV +RR  KQ   AA+     LD    ALE  +E  + + RSYD +LT L  DYE +++GLINHT MS LL A  E ++ G
Sbjct:   88 MIEELESGVSDLKGAKGIIRVLFSSLVASRRGLKQKTGAAKGFQEELDKQKRALEDTQELRQTELRSYDRKLTSLTADYERKINGLINHTGMSGLLHAAIERSEGG 193
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6561.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNZ6_ECTSI5.070e-1346.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6561contigP-wetherbeei_contig6561:2..3305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2639
Hectar predicted targeting categoryother localisation
Exons6
Cds size1932
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6561.1.1prot_P-wetherbeei_contig6561.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6561 513..2799 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.2352533-UTR-P-wetherbeei_contig6561:1..1141683186922.2352533-UTR-P-wetherbeei_contig6561:1..114Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6561 2..114 -
1683186922.2446008-UTR-P-wetherbeei_contig6561:195..5121683186922.2446008-UTR-P-wetherbeei_contig6561:195..512Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6561 196..512 -
1683186922.2920008-UTR-P-wetherbeei_contig6561:2799..29401683186922.2920008-UTR-P-wetherbeei_contig6561:2799..2940Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6561 2800..2940 -
1683186922.3001697-UTR-P-wetherbeei_contig6561:3169..33051683186922.3001697-UTR-P-wetherbeei_contig6561:3169..3305Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6561 3170..3305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.252597-CDS-P-wetherbeei_contig6561:512..7161683186922.252597-CDS-P-wetherbeei_contig6561:512..716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6561 513..716 -
1683186922.2665353-CDS-P-wetherbeei_contig6561:762..11151683186922.2665353-CDS-P-wetherbeei_contig6561:762..1115Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6561 763..1115 -
1683186922.2762675-CDS-P-wetherbeei_contig6561:1253..13651683186922.2762675-CDS-P-wetherbeei_contig6561:1253..1365Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6561 1254..1365 -
1683186922.2842996-CDS-P-wetherbeei_contig6561:1536..27991683186922.2842996-CDS-P-wetherbeei_contig6561:1536..2799Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6561 1537..2799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6561.1.1

>prot_P-wetherbeei_contig6561.1.1 ID=prot_P-wetherbeei_contig6561.1.1|Name=mRNA_P-wetherbeei_contig6561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=644bp
MSRLLEAEAETAQNGCSSAGGSGGGGEASVLDISGLSVQTAMTPIGGGVG
GGGFGTAAEPLGRVANEGAGAASVGAASRAASEGAPTAPPPPDREEQSRM
LLRLSNERNSALREQLRRIEGDLGRAEARAADAEQTRRAERQRQREERDF
LEFELKALRAEHKRLGARYAEALVGLEQAAAAGSAAAVAAAAASVGGHGP
GGGSGGGGRHVGTRSMPTSPLRPSSALRRRGVSGGGGGISVVGFNGGGIN
GHGGGSHAGGDFRDDDGDSLSPVEADDDLNGGGDGGFLGGGGGIGSRRSG
GGQGVGTTGGIRGSGGRIGDSPHWDDDGDGDGDGGYDDGDGGYDAFDDDD
APFDGVAEDLAAIKQGFIPESMKFVLGVQDDVEAEAAEAMAGGGGSGGQG
GKPRNVFERLCAVTTESHRLKLNKEQAAARPQQRNSTRRRERGRFATISS
GDNVSAGSAPSSFGPDAMFLSPPPLPLGGSGGAAGASSSDAPLLPPLPPS
YDDSARDSNRAFPLPPLPAPPPPPPAAPPQPIPDVFARLLDPAKFPVSAK
EKHAPPAATRYSIRFKLAASEGAGVAGTRGTAGTGRRGMPRADRRWLQVS
APATAATAAARLRRALGRAAAAMVTAGWPAAAGSAAPSRGRRS*
back to top

mRNA from alignment at P-wetherbeei_contig6561:2..3305-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6561.1.1 ID=mRNA_P-wetherbeei_contig6561.1.1|Name=mRNA_P-wetherbeei_contig6561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3304bp|location=Sequence derived from alignment at P-wetherbeei_contig6561:2..3305- (Phaeothamnion wetherbeei SAG_119_79)
AGACCTAGTGGAGGATTTGCAGGGGGGCGCGACGACGCTGCCGGCGGCGC
AGCAGACGATTCGGGTGCTGTTCAGCAGTCTGGTGCAGACGCGGCGGAAC
GGCAAGCAGAGCGCTGACGCTGCTCGCGAGCTCACAGTGAGTTCGAAAGG
AGGCTTTCGAAGCCTTCGCTTACGTCGGACCCAGGCTACAGCGTGCTTTT
AGCCCGTTTATTATTAGCACTTGCCACCTTTTCGCGGGCTCTCAGCCCTG
ATCTTTCTGGAAATGGAAGCGTTTGGGCTCACCTATTAACAAGAGTTTGA
GCCTCCCTCCGAAATCCTTTCATATCCATGCCGCCTCTTTCGCCCTCCCG
TTACGGCTGCTGCAGCTGCGGCTGGACGTGACATCGGCGGCGCTAGAGGC
GGCACGTGAGCAGGCACGCGCCGATAAGCGCAGCTACGACCACCGACTGA
CACGGCTTGCCCGCGACTACGAAGAGCGGCTCAGCGGGTTGATCAACCAC
ACCACCATGAGCCGCCTGCTAGAGGCGGAGGCCGAAACCGCTCAGAACGG
CTGCAGCAGTGCGGGAGGCAGCGGCGGCGGCGGCGAGGCGAGCGTGCTAG
ATATTTCGGGCCTTTCGGTGCAGACAGCGATGACACCCATCGGAGGAGGC
GTCGGCGGCGGAGGGTTCGGCACGGCGGCGGAGCCGTTGGGCAGGGTGGC
GAACGAAGGGGCGGGAGCTGCATCGGTGGGCGCAGCGAGCAGAGCGGCGA
GCGAGGGAGCGCCGACGGCACCGCCGCCGCCGGACCGGGAAGAACAGTCC
CGGATGCTCTTGCGGCTGAGCAACGAGCGCAACTCGGCCCTCCGCGAGCA
GCTGCGGCGCATCGAGGGGGACCTGGGGCGGGCGGAGGCGCGGGCGGCGG
ACGCCGAGCAGACGCGGCGCGCTGAGCGGCAGAGGCAGCGCGAGGAGCGC
GACTTTCTCGAGTTCGAGCTCAAGGCGCTCCGGGCCGAGCACAAGCGACT
CGGGGCCCGCTACGCCGAGGCGCTGGTGGGGCTGGAGCAGGCTGCGGCTG
CGGGATCAGCGGCGGCGGTGGCAGCGGCGGCCGCGTCGGTAGGAGGGCAC
GGGCCGGGAGGCGGCAGCGGCGGGGGCGGGCGCCATGTCGGCACGCGGAG
CATGCCGACCAGCCCGCTGCGTCCGTCGAGCGCCCTGCGTCGCCGCGGTG
TCAGTGGCGGCGGCGGCGGGATCAGCGTCGTCGGCTTCAATGGCGGCGGC
ATCAATGGCCACGGCGGTGGCAGCCATGCCGGCGGCGATTTTCGCGACGA
CGACGGGGACAGCCTCAGCCCCGTCGAAGCGGATGACGACTTGAACGGCG
GCGGTGACGGCGGCTTTCTAGGCGGCGGCGGCGGCATTGGCAGCCGCCGC
AGCGGCGGCGGGCAGGGGGTGGGAACCACCGGCGGCATCCGCGGCAGCGG
CGGCAGGATCGGCGACTCGCCGCACTGGGATGATGACGGCGACGGCGACG
GCGACGGCGGTTACGACGACGGCGACGGCGGCTACGACGCTTTCGACGAC
GACGACGCGCCGTTTGACGGCGTGGCGGAGGACCTGGCTGCCATCAAGCA
GGGCTTCATCCCCGAGTCGATGAAGTTTGTTTTGGGTGTGCAAGACGACG
TCGAGGCCGAAGCGGCCGAGGCGATGGCCGGCGGCGGTGGCAGCGGCGGC
CAGGGTGGCAAGCCGCGGAACGTGTTCGAGCGGCTCTGCGCGGTAACGAC
CGAGAGCCACCGCCTCAAGGTGGGTAGCGAATGGGCGCTTTCAAAGAAAT
TTAGCTAGGAGGTCTTTTCTGTCGTTCGTTGCAGGGTTGTCTTCTGCTAG
CAGAAGGATAGCAGCTGGTTTTTCCTTTTGCGGCATGGCTTTTTACTTCT
TGTTCTTCCTTCCCCGTTGCATCCCACATCTGCTGCGCAGCTGAACAAGG
AGCAAGCAGCTGCGCGGCCTCAGCAGCGCAATTCGACGCGGCGGCGGGAG
CGGGGACGTTTCGCCACCATCTCGTCCGGCGACAATGTGTCGGCGGGCTC
TGGTAAGCGGAAAGAGCCAGCGTCATGCATAAGTTCCTCCCATCCTCTTG
ACACCTCAGGTATCGGTTTGGACTGACGAGTCGTTTGTTTCCTGACGTAG
TTACTTACCGCACTTTTTCTCTGAACTAAATTGCCGGCAGCGCCATCTTC
GTTTGGCCCGGACGCCATGTTTTTGTCACCGCCGCCACTGCCGCTGGGCG
GGAGCGGCGGCGCCGCCGGTGCTTCTTCTTCGGACGCGCCGTTGCTGCCG
CCGCTGCCGCCGTCCTACGACGACAGTGCAAGAGACAGCAATCGGGCCTT
TCCTCTGCCACCGCTGCCAGCTCCGCCGCCGCCGCCGCCCGCGGCGCCGC
CGCAGCCCATCCCGGACGTCTTTGCGCGCCTACTCGACCCGGCCAAATTC
CCTGTGTCGGCGAAGGAGAAGCACGCACCCCCGGCGGCGACGCGGTACTC
AATTCGATTCAAGCTGGCGGCAAGCGAAGGCGCCGGCGTGGCGACGGCGG
CGGCGGCAGCAGCGGCGGCGGCGGGCGGCGGCGGTGGCGGGGACGCGTGG
GACTGCGGGGACCGGTCGCCGCGGCATGCCCAGGGCGGATCGCCGTTGGC
TTCAAGTGTCGGCGCCAGCGACCGCAGCGACCGCAGCGGCGAGACTGCGA
AGAGCGCTGGGGCGCGCGGCGGCGGCCATGGTCACGGCGGGCTGGCCGGC
GGCGGCGGGGAGCGCAGCGCCTTCTCGCGGGCGTCGGAGCTGACGCTGCC
GCCAGAACGCATCCGCAGCGAATCGCAGCATTCCAGTCATGGCGGCCGGG
CGCCGTCACCCGTGGTGCCCGGGGGTGATGAGCGGAGCTCCGCGCGATGC
GCCGCTCTTCCACTTGGTGCCAGCGCGAACGGCAGCGGCGGCGGCTGTGG
AGGGTTTGGCGGAGGCGGGCGGAAGAAAGGTGGCGGTGCCTCCGTGGCAG
GGACGGCGGCGGCGGGCCCGGCGGCGGCGGCAAAAGAGCCGTCACGGGAG
TCCGACGTCCTGCTGCGGCGGTACGCGATGCCGACAGAGGCGGAGCGGAT
GCGGCAGCAGGCGAAGCAGCAGCAGGTGTTGCAGCAGCAGCAATTCCAGC
AGCAATTTCAGCAAGCGGCAGCGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCCGCCACCGGAAGGGCCGCGGCGCAACTCGTCTGGCGATGC
AGATACGGTAAGGGACTCGCTGCCATAGACGGGGCGGGCCAGCGTGCTAG
CTGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6561:2..3305-

>mRNA_P-wetherbeei_contig6561.1.1 ID=mRNA_P-wetherbeei_contig6561.1.1|Name=mRNA_P-wetherbeei_contig6561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1932bp|location=Sequence derived from alignment at P-wetherbeei_contig6561:2..3305- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGCCTGCTAGAGGCGGAGGCCGAAACCGCTCAGAACGGCTGCAG
CAGTGCGGGAGGCAGCGGCGGCGGCGGCGAGGCGAGCGTGCTAGATATTT
CGGGCCTTTCGGTGCAGACAGCGATGACACCCATCGGAGGAGGCGTCGGC
GGCGGAGGGTTCGGCACGGCGGCGGAGCCGTTGGGCAGGGTGGCGAACGA
AGGGGCGGGAGCTGCATCGGTGGGCGCAGCGAGCAGAGCGGCGAGCGAGG
GAGCGCCGACGGCACCGCCGCCGCCGGACCGGGAAGAACAGTCCCGGATG
CTCTTGCGGCTGAGCAACGAGCGCAACTCGGCCCTCCGCGAGCAGCTGCG
GCGCATCGAGGGGGACCTGGGGCGGGCGGAGGCGCGGGCGGCGGACGCCG
AGCAGACGCGGCGCGCTGAGCGGCAGAGGCAGCGCGAGGAGCGCGACTTT
CTCGAGTTCGAGCTCAAGGCGCTCCGGGCCGAGCACAAGCGACTCGGGGC
CCGCTACGCCGAGGCGCTGGTGGGGCTGGAGCAGGCTGCGGCTGCGGGAT
CAGCGGCGGCGGTGGCAGCGGCGGCCGCGTCGGTAGGAGGGCACGGGCCG
GGAGGCGGCAGCGGCGGGGGCGGGCGCCATGTCGGCACGCGGAGCATGCC
GACCAGCCCGCTGCGTCCGTCGAGCGCCCTGCGTCGCCGCGGTGTCAGTG
GCGGCGGCGGCGGGATCAGCGTCGTCGGCTTCAATGGCGGCGGCATCAAT
GGCCACGGCGGTGGCAGCCATGCCGGCGGCGATTTTCGCGACGACGACGG
GGACAGCCTCAGCCCCGTCGAAGCGGATGACGACTTGAACGGCGGCGGTG
ACGGCGGCTTTCTAGGCGGCGGCGGCGGCATTGGCAGCCGCCGCAGCGGC
GGCGGGCAGGGGGTGGGAACCACCGGCGGCATCCGCGGCAGCGGCGGCAG
GATCGGCGACTCGCCGCACTGGGATGATGACGGCGACGGCGACGGCGACG
GCGGTTACGACGACGGCGACGGCGGCTACGACGCTTTCGACGACGACGAC
GCGCCGTTTGACGGCGTGGCGGAGGACCTGGCTGCCATCAAGCAGGGCTT
CATCCCCGAGTCGATGAAGTTTGTTTTGGGTGTGCAAGACGACGTCGAGG
CCGAAGCGGCCGAGGCGATGGCCGGCGGCGGTGGCAGCGGCGGCCAGGGT
GGCAAGCCGCGGAACGTGTTCGAGCGGCTCTGCGCGGTAACGACCGAGAG
CCACCGCCTCAAGCTGAACAAGGAGCAAGCAGCTGCGCGGCCTCAGCAGC
GCAATTCGACGCGGCGGCGGGAGCGGGGACGTTTCGCCACCATCTCGTCC
GGCGACAATGTGTCGGCGGGCTCTGCGCCATCTTCGTTTGGCCCGGACGC
CATGTTTTTGTCACCGCCGCCACTGCCGCTGGGCGGGAGCGGCGGCGCCG
CCGGTGCTTCTTCTTCGGACGCGCCGTTGCTGCCGCCGCTGCCGCCGTCC
TACGACGACAGTGCAAGAGACAGCAATCGGGCCTTTCCTCTGCCACCGCT
GCCAGCTCCGCCGCCGCCGCCGCCCGCGGCGCCGCCGCAGCCCATCCCGG
ACGTCTTTGCGCGCCTACTCGACCCGGCCAAATTCCCTGTGTCGGCGAAG
GAGAAGCACGCACCCCCGGCGGCGACGCGGTACTCAATTCGATTCAAGCT
GGCGGCAAGCGAAGGCGCCGGCGTGGCGGGGACGCGTGGGACTGCGGGGA
CCGGTCGCCGCGGCATGCCCAGGGCGGATCGCCGTTGGCTTCAAGTGTCG
GCGCCAGCGACCGCAGCGACCGCAGCGGCGAGACTGCGAAGAGCGCTGGG
GCGCGCGGCGGCGGCCATGGTCACGGCGGGCTGGCCGGCGGCGGCGGGGA
GCGCAGCGCCTTCTCGCGGGCGTCGGAGCTGA
back to top