mRNA_P-wetherbeei_contig656.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig656.2.1
Unique NamemRNA_P-wetherbeei_contig656.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Match: A0A6H5KZ87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ87_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.220e-9
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:  935 CQKCLETGHWTYECKKKESAYKPRVSRTLQLERPELRPAFTLEMPPGE 1078
            CQKCL+ GHWTYECK K + YK RVSRT  LE P+L+P F L++PPG+
Sbjct:   44 CQKCLQVGHWTYECKGK-ATYKARVSRTEILENPDLKPKFHLDLPPGK 90
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BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Match: A0A024GEX9_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GEX9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.130e-7
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 2 
Query:  935 CQKCLETGHWTYECKKKESAYKPRVSRTLQLERPELRPAFTLEMPP 1072
            CQKCL++GHWTYECK    AY+ R SR+ QL  P+LR  F  E PP
Sbjct:   20 CQKCLQSGHWTYECKN-TPAYRVRASRSQQLRNPKLRQPFNREKPP 64
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BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Match: A0A8K1FDP8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDP8_PYTOL)

HSP 1 Score: 57.4 bits (137), Expect = 7.380e-6
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 2 
Query:  935 CQKCLETGHWTYECKKKESAYKPRVSRTLQLERPELRPAFTLEMPP 1072
            CQKCL+ GHWTYECK  ++ Y  R SRT QL+ P+LR  F  + PP
Sbjct:   51 CQKCLQAGHWTYECKN-DAVYVKRASRTSQLKNPKLRQPFNQDKPP 95
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BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Match: F0WX55_9STRA (Uncharacterized protein AlNc14C342G10813 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX55_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.160e-5
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 2 
Query:  935 CQKCLETGHWTYECKKKESAYKPRVSRTLQLERPELRPAFTLEMPP 1072
            CQKCL+ GHWTYECK    AY  R SR+ QL  P+LR  F  E PP
Sbjct:   20 CQKCLQPGHWTYECKN-TPAYLVRASRSQQLRNPKLRQPFNHEKPP 64
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BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Match: A0A7S0GUQ6_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GUQ6_MICPS)

HSP 1 Score: 55.8 bits (133), Expect = 1.170e-5
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 2 
Query:  935 CQKCLETGHWTYECKKKESAYKPRVSRTLQLERPELRPA---FTLEMPP 1072
            CQKCL TGH+TYECK+KE AY  R SRT QL+ P+L      FT + PP
Sbjct:   41 CQKCLRTGHYTYECKEKERAYVSRPSRTQQLKNPKLAQKYADFTGDEPP 89
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BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Match: A0A0G4ID16_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4ID16_9ALVE)

HSP 1 Score: 56.6 bits (135), Expect = 2.310e-5
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 2 
Query:  929 QCCQKCLETGHWTYECKKKESAYKPRVSRTLQLERPELRPAF 1054
            Q CQ CL+ GHWTYECK + +AYK R +RT  L+ P LRP F
Sbjct:   24 QQCQNCLQKGHWTYECKAQNAAYKHRPTRTQVLKNPRLRPKF 65
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BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Match: A0A5N5L6H7_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5L6H7_9ROSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.120e-5
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 2 
Query:  935 CQKCLETGHWTYECKKKESAYKPRVSRTLQLERPELRP----AFTLEMPPGE 1078
            CQKC ++GHWTYECK  E  Y  R SRT QL+ P+LRP    ++ LE P GE
Sbjct:   96 CQKCFQSGHWTYECKN-ERVYMSRPSRTQQLKNPKLRPKVSISYDLENPEGE 146
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BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Match: A0A835MQS1_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835MQS1_9ROSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.530e-5
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 2 
Query:  935 CQKCLETGHWTYECKKKESAYKPRVSRTLQLERPELRP----AFTLEMPPGE 1078
            CQKC ++GHWTYECK  E  Y  R SRT QL+ P+LRP    ++ LE P GE
Sbjct:   96 CQKCFQSGHWTYECKN-ERVYMSRPSRTQQLKNPKLRPKVSISYDLENPEGE 146
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BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Match: A0A6A5RHU4_9PLEO (Uncharacterized protein n=1 Tax=Didymella exigua CBS 183.55 TaxID=1150837 RepID=A0A6A5RHU4_9PLEO)

HSP 1 Score: 55.5 bits (132), Expect = 4.760e-5
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:  920 SPFQCCQKCLETGHWTYECKKK--ESAYKPRVSRTLQLERPELRPAFTLEMP 1069
            SP   CQKCL+ GH++YECK K  E  YK R SRT QL  P L+P  T E+P
Sbjct:   13 SPATQCQKCLQRGHYSYECKAKASERPYKARPSRTQQLLNPTLKPKLTTEVP 64
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BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Match: A0A7S1CCG1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCG1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.230e-5
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 2 
Query:  929 QCCQKCLETGHWTYECKKKESAYKPRVSRTLQLERPELRPAFTLEMPP 1072
            Q CQKCL+ GHWTYECK   +  K R S + +L  P LRPAF+L+  P
Sbjct:   56 QRCQKCLQIGHWTYECKNARAPAKSRPSASERLRNPRLRPAFSLDAGP 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig656.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KZ87_9PHAE1.220e-964.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024GEX9_9STRA8.130e-758.70Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8K1FDP8_PYTOL7.380e-656.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WX55_9STRA1.160e-558.70Uncharacterized protein AlNc14C342G10813 n=1 Tax=A... [more]
A0A7S0GUQ6_MICPS1.170e-559.18Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A0G4ID16_9ALVE2.310e-559.52Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A5N5L6H7_9ROSI4.120e-555.77Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A835MQS1_9ROSI4.530e-555.77Uncharacterized protein n=1 Tax=Salix dunnii TaxID... [more]
A0A6A5RHU4_9PLEO4.760e-555.77Uncharacterized protein n=1 Tax=Didymella exigua C... [more]
A0A7S1CCG1_9STRA5.230e-554.17Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig656contigP-wetherbeei_contig656:778..2386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000016091
PFAMsMatE
Model size1609
Max annot lvl121069|Pythiales
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.33e-06
EggNOG OGsCOG0534@1|root,KOG3116@1|root,KOG1347@2759|Eukaryota,KOG3116@2759|Eukaryota,1MCND@121069|Pythiales
DescriptionMultidrug Oligosaccharidyl-lipid Polysaccharide (MOP) Flippase Superfamily. Source PGD
Cds size759
COG categoryV
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186921.922356-UTR-P-wetherbeei_contig656:777..15311683186921.922356-UTR-P-wetherbeei_contig656:777..1531Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig656 778..1531 +
1683186921.9426777-UTR-P-wetherbeei_contig656:2290..23861683186921.9426777-UTR-P-wetherbeei_contig656:2290..2386Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig656 2291..2386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186921.933171-CDS-P-wetherbeei_contig656:1531..22901683186921.933171-CDS-P-wetherbeei_contig656:1531..2290Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig656 1532..2290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig656.2.1prot_P-wetherbeei_contig656.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig656 1532..2290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig656.2.1

>prot_P-wetherbeei_contig656.2.1 ID=prot_P-wetherbeei_contig656.2.1|Name=mRNA_P-wetherbeei_contig656.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=253bp
MGRRSHEAHWRGAFTFRRGLKTGSASYLAVRKLLAKFCSCLSFNRITIFP
LPFYRSPFQCCQKCLETGHWTYECKKKESAYKPRVSRTLQLERPELRPAF
TLEMPPGEEKKEKKKADGKAGAKNDKKKKKDACKKEGVEAGAGAEKKQSR
RRRSRSSSSSSSSSSSSGSSTSSSGSSSSSSSSSSDTSRYGRNEKKKPRG
RRRSRSSSSSGSSSSSSSSSGEDDRSPPRKSKKNSAALKDKTGKPGSKKV
RR*
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mRNA from alignment at P-wetherbeei_contig656:778..2386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig656.2.1 ID=mRNA_P-wetherbeei_contig656.2.1|Name=mRNA_P-wetherbeei_contig656.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1609bp|location=Sequence derived from alignment at P-wetherbeei_contig656:778..2386+ (Phaeothamnion wetherbeei SAG_119_79)
ATTTCCTGTTCGTACAGGGAGGTCTGACAACAAGAGGCACCCAGCGAGCT
CCCATATGCGGCTTTCTTAAAGTTGGTACAAGAACAGGCAAGTCGCCATT
TCCCTTCTTGAGCTCTTTGTAGCAGCCTTTTGAAGTCATATTCCCCGCTG
GGAAAGCTCCGAGAGGACGGAAGCGCCTTGCAGAATCCAACAGCAACTCC
AATGTGTGCGCGCTGGAGAACTTTTGCCTTTCACGCCGTTGCCCGCGCAG
TAACAAAAGGCAAGCGCTGACTTAAAATTGATTATTCTGTTCTTTTATTA
CCTATAAGAAAGTGCTGACACCGCCGATTCTCCTGTGACTCTCTTCTTGA
ACCCACCATAAAGAACAGGGGAAGTCGCCGGTTGCCGAACTGGGAGCGGA
AATCCCCGTAGAACAGGAAAAGTTTTGAGCTCTTTTCACCTCTCCGTGCA
ACCATGGACGAAGCGCCCATGAGCCGATGGGCCAAGCGGAAAGAGCTGAA
GGAGTCTATGTACGAGGCGGCGACCTCCTCTGTTGTTGTCGGCAAGAAGG
ACAAGGGCGGGCCCAAGACAAGTGAGTGATCGATTTCGCACCTCTCGTCG
CTGTCTCTATGCTCTGACCTCTCAGTAATCATTCTGCCTGCGTTTCCCCT
CGTTCACGGACTGAGGTGCTGACAACTTTCTTCTGCGTCGAACGCGGTCT
GTTCCTTCTGTCACCTCAAAAAATAATCAGTGGTAAGTCGAGGACACGAG
AGGGATGGGTAGGAGGAGTCACGAGGCTCACTGGAGAGGAGCCTTCACGT
TCCGAAGGGGCCTGAAAACGGGGTCTGCTTCTTATTTAGCTGTTAGAAAA
TTGCTGGCTAAGTTCTGTTCTTGTCTCTCTTTCAACCGTATAACAATTTT
TCCGCTTCCCTTTTACCGCTCCCCGTTCCAGTGCTGTCAAAAGTGTCTCG
AGACGGGACATTGGACGTACGAATGCAAAAAAAAGGAGTCTGCCTACAAG
CCGCGTGTCAGTCGCACCCTGCAGCTTGAGCGTCCCGAGCTCCGCCCGGC
CTTCACTCTCGAGATGCCGCCAGGAGAAGAAAAGAAGGAGAAAAAGAAAG
CGGACGGCAAGGCCGGTGCGAAGAACGACAAGAAGAAGAAGAAAGACGCG
TGCAAAAAGGAAGGAGTGGAGGCGGGCGCCGGTGCTGAGAAGAAACAGTC
CCGCCGCCGCCGGAGCCGGAGCAGCAGCAGCAGCAGCTCTTCTTCGAGCA
GCAGCGGCAGCAGCACTTCGAGCAGCGGCAGCAGTTCCAGCAGCAGCTCT
AGCTCCAGCGACACTTCGCGCTACGGCCGCAATGAAAAAAAGAAGCCTCG
CGGCCGGCGGCGGAGCCGCAGCAGCAGCAGCAGCGGGAGCAGTAGCAGCA
GCAGCTCCAGCTCGGGCGAAGACGACAGATCGCCGCCGCGGAAAAGCAAA
AAGAACTCGGCGGCGTTGAAAGACAAGACAGGCAAGCCGGGAAGTAAGAA
GGTGCGCCGCTAGGAGGACTGCTCCGTGGCGGTATTGGCGGCAGCGGGGG
GTGCATTACGAAGGAGAAATGCGTTGCGATGGTGTGTAAGAGAAAATGTT
TTCACGAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig656:778..2386+

>mRNA_P-wetherbeei_contig656.2.1 ID=mRNA_P-wetherbeei_contig656.2.1|Name=mRNA_P-wetherbeei_contig656.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig656:778..2386+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTAGGAGGAGTCACGAGGCTCACTGGAGAGGAGCCTTCACGTTCCG
AAGGGGCCTGAAAACGGGGTCTGCTTCTTATTTAGCTGTTAGAAAATTGC
TGGCTAAGTTCTGTTCTTGTCTCTCTTTCAACCGTATAACAATTTTTCCG
CTTCCCTTTTACCGCTCCCCGTTCCAGTGCTGTCAAAAGTGTCTCGAGAC
GGGACATTGGACGTACGAATGCAAAAAAAAGGAGTCTGCCTACAAGCCGC
GTGTCAGTCGCACCCTGCAGCTTGAGCGTCCCGAGCTCCGCCCGGCCTTC
ACTCTCGAGATGCCGCCAGGAGAAGAAAAGAAGGAGAAAAAGAAAGCGGA
CGGCAAGGCCGGTGCGAAGAACGACAAGAAGAAGAAGAAAGACGCGTGCA
AAAAGGAAGGAGTGGAGGCGGGCGCCGGTGCTGAGAAGAAACAGTCCCGC
CGCCGCCGGAGCCGGAGCAGCAGCAGCAGCAGCTCTTCTTCGAGCAGCAG
CGGCAGCAGCACTTCGAGCAGCGGCAGCAGTTCCAGCAGCAGCTCTAGCT
CCAGCGACACTTCGCGCTACGGCCGCAATGAAAAAAAGAAGCCTCGCGGC
CGGCGGCGGAGCCGCAGCAGCAGCAGCAGCGGGAGCAGTAGCAGCAGCAG
CTCCAGCTCGGGCGAAGACGACAGATCGCCGCCGCGGAAAAGCAAAAAGA
ACTCGGCGGCGTTGAAAGACAAGACAGGCAAGCCGGGAAGTAAGAAGGTG
CGCCGCTAG
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