mRNA_P-wetherbeei_contig6556.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6556.1.1
Unique NamemRNA_P-wetherbeei_contig6556.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6556.1.1 vs. uniprot
Match: D7FVD1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD1_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 8.800e-8
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 2 
Query:  161 QLPEARRLLISMGLFPAELYQTGETLTERALREDGREPDPAAAALVHRVRGFDDVITKLKADEMLLE 361
            +L + R+ L+++GLFP ELY  GET  E  LRE   + DPA   L  R+R +D  +T++K D +L E
Sbjct:  794 KLTDVRKQLMTVGLFPPELYGVGETFEEMRLREKLADADPAVEDLARRLRSWDAAMTEVKVDGLLAE 860
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6556.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVD1_ECTSI8.800e-843.28Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6556contigP-wetherbeei_contig6556:947..1535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186921.6897593-CDS-P-wetherbeei_contig6556:948..10841683186921.6897593-CDS-P-wetherbeei_contig6556:948..1084Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6556 949..1084 -
1683186921.7038229-CDS-P-wetherbeei_contig6556:1308..15351683186921.7038229-CDS-P-wetherbeei_contig6556:1308..1535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6556 1309..1535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6556.1.1prot_P-wetherbeei_contig6556.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6556 949..1535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6556.1.1

>prot_P-wetherbeei_contig6556.1.1 ID=prot_P-wetherbeei_contig6556.1.1|Name=mRNA_P-wetherbeei_contig6556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
GRESGGSVDGGGGDPCADRRRSDSVFRTVSAGLFDGGGWCGGGGGGRGGT
GLEAAARSAAAADFDGTLPRGALPDRRDADRTRAPGRRSRAGPSGGRPRP
SRARVRRRYHKAQSRRDAVGG
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mRNA from alignment at P-wetherbeei_contig6556:947..1535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6556.1.1 ID=mRNA_P-wetherbeei_contig6556.1.1|Name=mRNA_P-wetherbeei_contig6556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=589bp|location=Sequence derived from alignment at P-wetherbeei_contig6556:947..1535- (Phaeothamnion wetherbeei SAG_119_79)
GGGCGGGAAAGTGGCGGAAGCGTTGATGGCGGAGGTGGTGACCCGTGCGC
CGATCGCCGGCGCTCTGACAGTGTTTTCCGGACAGTCTCAGCAGGCCTCT
TTGACGGCGGCGGGTGGTGCGGCGGAGGCGGAGGCGGCCGCGGCGGCACT
GGACTCGAAGCAGCTGCCCGAAGCGCGGCGGCTGCTGATTTCGATGGGAC
TCTTCCCCGCGGAGCTCTACCAGACAGGTAGGTGTACACGGAGGAGCTTT
CAGTGCTGCTGCTTGTCCCTTTCATGACTGCCGAGGGTATCTGTTTTTCC
CTGCCGGATGCGAACCTTGTTGACTTTTCCGCTGTGGACGGAGCAAGGCA
AGCAAACCTTCACAGAGTTCGCGGAGACTCTACGACTTACAGAATGTCAA
CGGAGCTAATCATGTTTGAAAGCTTCTACCGTCTGCCCCGCACTCGGCCA
GGCGAGACGCTGACAGAACGCGCGCTCCGGGAAGACGGTCGCGAGCCGGA
CCCAGCGGCGGCCGCCCTCGTCCATCGCGTGCGCGGGTTCGACGACGTTA
TCACAAAGCTCAAAGCCGACGAGATGCTGTTGGAGGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6556:947..1535-

>mRNA_P-wetherbeei_contig6556.1.1 ID=mRNA_P-wetherbeei_contig6556.1.1|Name=mRNA_P-wetherbeei_contig6556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig6556:947..1535- (Phaeothamnion wetherbeei SAG_119_79)
GGGCGGGAAAGTGGCGGAAGCGTTGATGGCGGAGGTGGTGACCCGTGCGC
CGATCGCCGGCGCTCTGACAGTGTTTTCCGGACAGTCTCAGCAGGCCTCT
TTGACGGCGGCGGGTGGTGCGGCGGAGGCGGAGGCGGCCGCGGCGGCACT
GGACTCGAAGCAGCTGCCCGAAGCGCGGCGGCTGCTGATTTCGATGGGAC
TCTTCCCCGCGGAGCTCTACCAGACAGGCGAGACGCTGACAGAACGCGCG
CTCCGGGAAGACGGTCGCGAGCCGGACCCAGCGGCGGCCGCCCTCGTCCA
TCGCGTGCGCGGGTTCGACGACGTTATCACAAAGCTCAAAGCCGACGAGA
TGCTGTTGGAGGT
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