mRNA_P-wetherbeei_contig6547.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6547.1.1
Unique NamemRNA_P-wetherbeei_contig6547.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Match: A0A835YJC5_9STRA (RNA methyltransferase, TrmA family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC5_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.470e-65
Identity = 133/277 (48.01%), Postives = 166/277 (59.93%), Query Frame = 1
Query:  325 PFKYLQELEGRVESLTNLGDGVLRVD-----GWVVLVPLVAPGERVRVAIHSTYKNHSEATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCLERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRP--SPDGTVHAIGFRRTKFPSPFYGEQVATASAG-IIDVPRCEIARPAINDALPAVRTAALEAMRRRARGVAAXXXXXXXXXXXXXXXXNVTPAATTAQKLMGATLLLREVEEGVVTDHNAQV-RNLSIPSFRWSA 1128
            PF+YLQELE R+ESLTNLGDGV RV      GWVV+V  V PGE V+  ++  + N+SEATL EVLE S DRV P+C L+G CGGCQYQH+++ AQR WKRQQV+D LERIGGL+GV V    G++HAYGYRSKITPH++ P     G V +IGF+R  FP+ F+   + T     I+DVP+C IA                 A R R R  AA                    A     K  GATLLLR V+EGVV D+   V   +S  +F+++A
Sbjct:   15 PFEYLQELELRIESLTNLGDGVARVTVDGVAGWVVMVGRVVPGELVKAKVYRNHNNYSEATLTEVLEPSPDRVTPQCALFGMCGGCQYQHMAVGAQREWKRQQVVDVLERIGGLRGVAVNAAVGSEHAYGYRSKITPHYEAPLRKAPGDVRSIGFQRLPFPTLFHDIDIETVDTQKILDVPQCPIA-----------------AARARVRDAAAAAFA----------------AGRARFKSKGATLLLRHVKEGVVYDNKELVTEEVSGLTFKFTA 258          
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Match: D7G7Q0_ECTSI (RNA methyltransferase, TrmA family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q0_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 9.740e-64
Identity = 125/267 (46.82%), Postives = 159/267 (59.55%), Query Frame = 1
Query:  304 PPRFRDKPFKYLQELEGRVESLTNLGDGVLRVD--GWVVLVPLVAPGERVRVAIHSTYKNHSEATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCLERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRPSPDGTVHAIGFRRTKFPSPFYGEQVATASAG-IIDVPRCEIARPAINDALPAVRTAALEAMRRRARGVAAXXXXXXXXXXXXXXXXNVTPAATTAQKLMGATLLLREV-EEGVVTDHNAQV 1092
            PP+F   P++YL+EL  R+ESLTNLG+G+ R    GWVV+VP V PGE V+  +   + N+SEATL+ V E S DRVEP CPL+G CGGCQYQH+S+  QR WK QQV+DCL RIGG+    V+ T GT   YGYRSK+TPH+D P   G V  IGF++ KFP+ ++G  +   +   ++DV RC +A   IN++LP  R  A E      R  AA                             GATLL RE  EEG VTD+NA V
Sbjct:   85 PPKFTPTPYEYLEELTVRIESLTNLGEGIAREGETGWVVMVPHVIPGELVKCKVFRNHANYSEATLVSVEEPSPDRVEPNCPLFGMCGGCQYQHMSVSMQRDWKNQQVMDCLTRIGGMVDPAVKDTFGTDETYGYRSKLTPHYDAPY-QGRVREIGFKKVKFPTIYHGVDLGNVNPSKVVDVERCPLATEGINESLPPARQEARE------RVQAAFDSGDGKRVGKR-----------------GATLLFRETTEEGTVTDNNAHV 327          
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Match: A0A7X1B3B5_9BACT (Class I SAM-dependent RNA methyltransferase n=2 Tax=Puniceicoccus vermicola TaxID=388746 RepID=A0A7X1B3B5_9BACT)

HSP 1 Score: 204 bits (518), Expect = 1.510e-57
Identity = 120/263 (45.63%), Postives = 144/263 (54.75%), Query Frame = 1
Query:  304 PPRFRDKPFKYLQELEGRVESLTNLGDGVLRVDGWVVLVPLVAPGERVRVAIHSTYKNHSEATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCLERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRPSPDGTVHAIGFRRTKFPSPFYGEQVATASAGIIDVPRCEIARPAINDALPAVRTAALEAMRRRARGVAAXXXXXXXXXXXXXXXXNVTPAATTAQKLMGATLLLREVEEGVVTDHNAQV 1092
            P  F  +PF+Y QELE  VESLTNLG GV R DGWV+++P   PGE++R  +     N SEA L+EVLE S +RV+P+CPL+G+CGGCQYQ LS  AQ  WK+ QV D LERIGG++  V+ P    K  YGYRSKITPH+ R   DG    IGF R                  IIDVP+C IA PAIN+ LP +R                                 V       +K  GATLLLRE  EGV+TD  A V
Sbjct:    4 PKNFIPEPFEYHQELELSVESLTNLGVGVARQDGWVIMIPFSLPGEKIRARVFRNRPNFSEADLIEVLEASPNRVDPKCPLFGSCGGCQYQQLSYPAQLEWKQAQVRDALERIGGIENEVLMPIGSPKE-YGYRSKITPHYQRWRDDGDF-PIGFLRV------------AQRQRIIDVPQCPIATPAINETLPELRA-------------------------------QVKKTPPKGKKKKGATLLLRETMEGVITDAKALV 221          
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Match: W7TEN0_9STRA (Rna family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEN0_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.080e-57
Identity = 125/284 (44.01%), Postives = 153/284 (53.87%), Query Frame = 1
Query:  325 PFKYLQELEGRVESLTNLGDGVLRV----------------------------DGWVVLVPLVAPGERVRVAIHSTYKNHSEATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCLERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRPSPDGTVHAIGFRRTKFPSPFYGEQVATASAGIIDVPRCEIARPAINDALPAVRTAALEAMRRRARGVAAXXXXXXXXXXXXXXXXNVTPAATTAQKLMGATLLLREVEEGVVTDHNAQV 1092
            PF Y +ELE  VESLTNLG G+ R                             +GWVV+VP V PGER+R+ I+  +KN+SEA L+ VLE S +RVEP CPL+G CGGCQYQH+S+ AQR WKR+ V+  L R G + GV VQ T GT+H  GYRSKITPH ++P   G +  IGF +               S  ++DVP C IA PAIN  L  +R    E +R  AR  A                      A T +K  GATLLLRE  EGVVTD  A+V
Sbjct:  114 PFAYHEELELTVESLTNLGWGICRASLPSVPDAQSPEMPLPTPSTPGGPRESPEGWVVMVPGVIPGERIRLRIYRNHKNYSEADLMHVLESSPERVEPACPLFGTCGGCQYQHMSVAAQRAWKREHVLQVLARTGNVTGVAVQETIGTEHTLGYRSKITPHHEKPR-GGEIREIGFLKL-------------GSRALVDVPECAIATPAINARLRGLR----EEVRVTARAAAV---------------------AETPRKPKGATLLLRETREGVVTDPRAEV 358          
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Match: A0A4Q2YFF9_9BACT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2YFF9_9BACT)

HSP 1 Score: 196 bits (499), Expect = 1.150e-54
Identity = 116/263 (44.11%), Postives = 148/263 (56.27%), Query Frame = 1
Query:  298 RPPPRFRDKPFKYLQELEGRVESLTNLGDGVLRVDGWVVLVPLVAPGERVRVAIHSTYKNHSEATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCLERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRPSPDGTVHAIGFRRTKFPSPFYGEQVATASAGIIDVPRCEIARPAINDALPAVRTAALEAMRRRARGVAAXXXXXXXXXXXXXXXXNVTPAATTAQKLMGATLLLREVEEGVVTDHNA 1086
            RPP +F   PF + QE+E  + +LTN+G G+ RVDGWVV+V    PGERVR  +    KN SEA L+EVL  S DR  P CP++G CGGCQYQ+L+  AQ +WKR+QV + L  +  ++  V+ P  G+   YGYRSKITPHF+ P   G +  IGF R            A     ++DVPRCEIA PAINDALP +R A    +R+R                             +A    GATLLLR+  EGV+TD NA
Sbjct:    8 RPPRKFVPTPFFWHQEIELEIVTLTNMGQGLGRVDGWVVMVAFALPGERVRARVFRNDKNFSEADLVEVLTPSPDRAIPLCPIFGNCGGCQYQNLTYAAQLQWKRRQVAELLRHMAKIEQEVL-PVIGSPKEYGYRSKITPHFELPREGGPIREIGFLR------------AGRRYELVDVPRCEIATPAINDALPEIRNA----VRKR-----------------------------SASYKKGATLLLRDTLEGVMTDSNA 224          
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Match: A0A842HHT9_9BACT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Ruficoccus amylovorans TaxID=1804625 RepID=A0A842HHT9_9BACT)

HSP 1 Score: 196 bits (499), Expect = 1.180e-54
Identity = 115/263 (43.73%), Postives = 151/263 (57.41%), Query Frame = 1
Query:  304 PPRFRDKPFKYLQELEGRVESLTNLGDGVLRVDGWVVLVPLVAPGERVRVAIHSTYKNHSEATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCLERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRPSPDGTVHAIGFRRTKFPSPFYGEQVATASAGIIDVPRCEIARPAINDALPAVRTAALEAMRRRARGVAAXXXXXXXXXXXXXXXXNVTPAATTAQKLMGATLLLREVEEGVVTDHNAQV 1092
            P  F+ +PF Y +ELE RV++LTNLG G+ RV+GWVV+VP   PGERVRV ++  +K HS+A LLE++E S +RV+P CPL+G CGGCQYQH+S  AQR WKRQQV + L R+ G+   V  PT G+   Y YRSK+TPH+ +P       A   +R + P  F  +        I+DVP C IA  AIN+ALP  R    + +R R                             +A+   G TLLLR   +GV TD+NA V
Sbjct:    7 PKNFKPEPFAYHEELELRVDTLTNLGSGLGRVNGWVVMVPFALPGERVRVRVYRNHKQHSDADLLEIIEPSPERVDPLCPLFGTCGGCQYQHMSYAAQREWKRQQVSELLVRLAGITHPV-NPTHGSPREYHYRSKLTPHYPKPFKPKPGEAATPKR-EMPIGFLHQGQRNR---IVDVPACPIATEAINEALPTER----KRIRER-----------------------------SAKLKKGGTLLLRHTLDGVTTDNNASV 231          
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Match: A0A2A2QDI8_9BACT (SAM-dependent methyltransferase n=1 Tax=Verrucomicrobiae bacterium Tous-C4TDCM TaxID=1982332 RepID=A0A2A2QDI8_9BACT)

HSP 1 Score: 194 bits (493), Expect = 7.000e-54
Identity = 121/265 (45.66%), Postives = 151/265 (56.98%), Query Frame = 1
Query:  298 RPPPRFRDKPFKYLQELEGRVESLTNLGDGVLRVDGWVVLVPLVAPGERVRVAIHSTYKNHSEATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCLERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRPSPDGTVHAIGFRRTKFPSPFYGEQVATASAGIIDVPRCEIARPAINDALPAVRTAALEAMRRRARGVAAXXXXXXXXXXXXXXXXNVTPAATTAQKLMGATLLLREVEEGVVTDHNAQV 1092
            RPP +F   PF Y QE+E R+++L+NLG G+ RVDGWVV VP   PGE V+  +    KN S+A L+EVLE S DRVEP CPL+G CGGCQYQHLS EAQ  WK +QV + L+ + G++   V+P   +   + YRSKITPHFDRP  DG +  IGF     P+   G +     +GIIDVPRC IA   IN ALP  R    E+ R+RA+                                 GATLLLR  E  V T+H+A V
Sbjct:    3 RPPKKFHPHPFAYHQEIELRIDALSNLGIGIGRVDGWVVFVPFCLPGELVKARVFRNDKNCSQADLVEVLEPSPDRVEPGCPLFGTCGGCQYQHLSYEAQLAWKTRQVGELLQHMAGIE-FPVEPCIPSPQLWNYRSKITPHFDRPK-DGVIGEIGF----LPN---GRR-----SGIIDVPRCPIAMAEINAALPRER----ESARQRAK-----------------------------MYKKGATLLLRATEGRVETNHHAVV 220          
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Match: A0A8J3DDD4_9BACT (23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Cerasicoccus arenae TaxID=424488 RepID=A0A8J3DDD4_9BACT)

HSP 1 Score: 193 bits (490), Expect = 2.020e-53
Identity = 115/263 (43.73%), Postives = 145/263 (55.13%), Query Frame = 1
Query:  304 PPRFRDKPFKYLQELEGRVESLTNLGDGVLRVDGWVVLVPLVAPGERVRVAIHSTYKNHSEATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCLERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRPSPDGTVHAIGFRRTKFPSPFYGEQVATASAGIIDVPRCEIARPAINDALPAVRTAALEAMRRRARGVAAXXXXXXXXXXXXXXXXNVTPAATTAQKLMGATLLLREVEEGVVTDHNAQV 1092
            P  F  +P+ Y  ELE  VE+LTNLG G+ R + WVV+VP   PGERVR  +   +KN+S+A L++VLE S  RVEP CPL+G CGGCQYQHL    Q+ WKR QV+D +ERIGGL+ VVV+P  G+   Y YRSK+TPH   P+       IGF R       YG +       IIDVP+C IA  AIN+ALP  R   + A + + +                                 G+TLLLR   EGV+TD  A V
Sbjct:    8 PRNFNPEPYPYHHELELIVETLTNLGHGLARDNNWVVMVPFALPGERVRARVFRNHKNYSDADLVDVLEPSPQRVEPPCPLFGQCGGCQYQHLDYTGQKEWKRGQVVDLMERIGGLENVVVEPVHGSPKEYHYRSKLTPH--HPNRQSKDFPIGFLR-------YGRRNQ-----IIDVPQCPIATDAINEALPIERKK-IHAKKEKFK--------------------------------RGSTLLLRHTLEGVITDPRATV 223          
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Match: A0A3E1E5Z2_9BACT (23S rRNA (Uracil1939-C5)-methyltransferase/tRNA (Uracil-5-)-methyltransferase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1E5Z2_9BACT)

HSP 1 Score: 193 bits (490), Expect = 2.630e-53
Identity = 99/199 (49.75%), Postives = 130/199 (65.33%), Query Frame = 1
Query:  298 RPPPRFRDKPFKYLQELEGRVESLTNLGDGVLRVDGWVVLVPLVAPGERVRVAIHSTYKNHSEATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCLERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRPSPDGTVHAIGFRRTKFPSPFYGEQVATASAGIIDVPRCEIARPAINDALPAVR 894
            RPP RF  +PF Y Q++E RV++LTNLG GV R+DGWVV++P   PGERVR  ++  +KN+SEA L+EVLE S DR+ P CPL+  CGGCQYQ+L+ E Q  WKR+QV   L R+ G++   V P   +   YGYRSKITPHF +P  DG V  IGF +        G++       ++DVP+C IA   +N AL +VR
Sbjct:   10 RPPKRFLAEPFSYHQQIELRVDNLTNLGLGVGRIDGWVVMIPFALPGERVRARVYRNHKNYSEADLIEVLEPSPDRIFPVCPLFTTCGGCQYQNLTYERQLEWKREQVGSLLHRLAGIQDATVDPVIPSPLRYGYRSKITPHFQQPR-DGQVGPIGFLQA-------GQRFK-----LVDVPQCPIASAPLNQALASVR 195          
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Match: A0A6N2CI78_9BACT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A6N2CI78_9BACT)

HSP 1 Score: 191 bits (485), Expect = 1.090e-52
Identity = 121/258 (46.90%), Postives = 149/258 (57.75%), Query Frame = 1
Query:  304 PPRFRDKPFKYLQELEGRVESLTNLGDGVLRVDGWVVLVPLVAPGERVRVAIHSTYKNHSEATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCLERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRPSPDGTVHAIGFRRTKFPSPFYGEQVATASAGIIDVPRCEIARPAINDALPAVRTAALEAMRRRARGVAAXXXXXXXXXXXXXXXXNVTPAATTAQKLMGATLLLREVEEGVVTD 1077
            P  F  +PF+Y QE+E  VESLTNLG GV RVDGWVV+VP V PGERVRV I   ++N+S+A LLEVLE S DRV PECPLY  CGGCQYQHL+   Q + K + V + ++++GG++  V +   G+   Y YRSKITPH+DRP  DG+   IGF +       YG +       IIDV +C IA  AIN ALP  R  A     RRA G                            ++  G TLL+R V EGVVTD
Sbjct:    6 PKNFVAEPFEYHQEIEFTVESLTNLGMGVGRVDGWVVMVPFVIPGERVRVRIFRNFQNYSDADLLEVLEASPDRVAPECPLYTRCGGCQYQHLNYARQLKEKTRHVEELMQKLGGIQHPV-ELAHGSPEIYQYRSKITPHYDRPDRDGS-QPIGFLQ-------YGRRNQ-----IIDVEQCPIATQAINAALPEARAEA-----RRAGG--------------------------KKRRQRGGTLLMRGVLEGVVTD 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6547.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJC5_9STRA1.470e-6548.01RNA methyltransferase, TrmA family n=1 Tax=Tribone... [more]
D7G7Q0_ECTSI9.740e-6446.82RNA methyltransferase, TrmA family n=1 Tax=Ectocar... [more]
A0A7X1B3B5_9BACT1.510e-5745.63Class I SAM-dependent RNA methyltransferase n=2 Ta... [more]
W7TEN0_9STRA5.080e-5744.01Rna family n=1 Tax=Nannochloropsis gaditana TaxID=... [more]
A0A4Q2YFF9_9BACT1.150e-5444.11Class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A842HHT9_9BACT1.180e-5443.73Class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A2A2QDI8_9BACT7.000e-5445.66SAM-dependent methyltransferase n=1 Tax=Verrucomic... [more]
A0A8J3DDD4_9BACT2.020e-5343.7323S rRNA (Uracil-5-)-methyltransferase RumA n=2 Ta... [more]
A0A3E1E5Z2_9BACT2.630e-5349.7523S rRNA (Uracil1939-C5)-methyltransferase/tRNA (U... [more]
A0A6N2CI78_9BACT1.090e-5246.90Class I SAM-dependent RNA methyltransferase n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6547contigP-wetherbeei_contig6547:2..2183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7Q0
Preferred nameTRM2
PFAMsTRAM,tRNA_U5-meth_tr
Model size1327
Max annot lvl2759|Eukaryota
KEGG koko:K15331
Hectar predicted targeting categoryother localisation
GOsGO:0000014,GO:0001510,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008309,GO:0008409,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016740,GO:0016741,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0030488,GO:0030696,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035312,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051908,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:0140098,GO:0140101,GO:1901360
Exons3
Evalue1.77e-65
EggNOG OGsCOG2265@1|root,KOG2187@2759|Eukaryota
EC2.1.1.35
DescriptionS-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
Cds size1101
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186920.9986706-UTR-P-wetherbeei_contig6547:1..1941683186920.9986706-UTR-P-wetherbeei_contig6547:1..194Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6547 2..194 -
1683186921.0577269-UTR-P-wetherbeei_contig6547:2150..21831683186921.0577269-UTR-P-wetherbeei_contig6547:2150..2183Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6547 2151..2183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186921.0118027-CDS-P-wetherbeei_contig6547:194..7131683186921.0118027-CDS-P-wetherbeei_contig6547:194..713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6547 195..713 -
1683186921.0254567-CDS-P-wetherbeei_contig6547:1039..13571683186921.0254567-CDS-P-wetherbeei_contig6547:1039..1357Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6547 1040..1357 -
1683186921.0421767-CDS-P-wetherbeei_contig6547:1886..21501683186921.0421767-CDS-P-wetherbeei_contig6547:1886..2150Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6547 1887..2150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6547.1.1prot_P-wetherbeei_contig6547.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6547 195..2150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6547.1.1

>prot_P-wetherbeei_contig6547.1.1 ID=prot_P-wetherbeei_contig6547.1.1|Name=mRNA_P-wetherbeei_contig6547.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=367bp
MLTSPASAGAQVATIIAGGRSLESKVTTIVSQRNLRVSVLRQRRRTMVLC
LCFHALKGARGYAALRPNIVAMTEGLAAAAGVPFRGFSRPPPRFRDKPFK
YLQELEGRVESLTNLGDGVLRVDGWVVLVPLVAPGERVRVAIHSTYKNHS
EATLLEVLERSLDRVEPECPLYGACGGCQYQHLSLEAQRRWKRQQVIDCL
ERIGGLKGVVVQPTAGTKHAYGYRSKITPHFDRPSPDGTVHAIGFRRTKF
PSPFYGEQVATASAGIIDVPRCEIARPAINDALPAVRTAALEAMRRRARG
VAAAFGGGGGSGSSNGGAENVTPAATTAQKLMGATLLLREVEEGVVTDHN
AQVRNLSIPSFRWSAC*
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mRNA from alignment at P-wetherbeei_contig6547:2..2183-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6547.1.1 ID=mRNA_P-wetherbeei_contig6547.1.1|Name=mRNA_P-wetherbeei_contig6547.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2182bp|location=Sequence derived from alignment at P-wetherbeei_contig6547:2..2183- (Phaeothamnion wetherbeei SAG_119_79)
CTTCTCTCTTTTTCTGGCGTTTTGCTAAAATTCATGCTTACCTCACCTGC TTCGGCCGGCGCTCAAGTCGCCACAATCATTGCTGGCGGGCGCTCGCTGG AGAGCAAAGTCACTACGATAGTCTCGCAACGAAACTTAAGGGTGTCGGTT CTTCGGCAAAGGCGGCGCACTATGGTGCTGTGCCTCTGTTTTCACGCGCT TAAAGGCGCTCGAGGCTATGCTGCTCTCCGACCGAACATTGTCGCGATGA CCGAAGGACTCGCGGCAGCAGCCGGGGTCCCATTTCGTGGTTTTTCGGTG AGGTCTTCCCCTTGTTCAATTGCGAGATCTTCACTTGTTGCTCCCTTTGA ACCATTGGTCACGAAGGCGTCGAAGCCAGAGATTCCGTCCACGTCGGCGA AAGCGGCACCTTCGGCGGCGTCGCTGCGCTTGCGGGTCATATATACTCCA CGACCGGGAACGGCCGCTGCCAGGACTGCGACTGATGTTGCCGCCGGCAC CGCTGCTGTTGCCGCCGGCACCGCTGCTGTTGCCGCCGGCACCGCTCCTG TCTTCGCCGGCGACTGCAGCGTTTCGAGCACTTGACTTGCCAAGGCGCAG CGGGCGCAGCGACCAGCAGCCGCCACCTGGGCTCGTGGCAGCAGCTGCTG CAACCGCCTCTGCCGCCGCTGCTGCGGCCGCCGCGTCGGCGACGGCGGCC GATTCCTCCTGCGGTCTTCTCTTTCAGTGTCAGCATCAAACCTCTTCCTT CCTTCGCTTTCAAATGAGTTTCGATCGCCTGCTAACCACGTCAATTTGGC CTCCCTGTCGCCCACGCCCCCGGCAGCGTCCACCGCCGCGGTTCCGCGAC AAGCCTTTCAAATATCTCCAAGAGCTGGAAGGCCGCGTCGAAAGCCTGAC CAACCTCGGTGATGGCGTCCTACGCGTGGACGGCTGGGTCGTCCTCGTCC CGCTGGTGGCGCCGGGTGAGCGGGTGCGCGTCGCCATCCACAGCACCTAC AAGAATCATTCGGAAGCGACGCTTTTGGAAGTGCTGGAGCGCTCGCTGGA TCGCGTCGAGCCGGAATGCCCCCTCTATGGGGCGTGCGGGGGCTGCCAGT ACCAGCATTTGAGTTTGGAGGCGCAGCGGCGCTGGAAGCGGCAGGCAAGT CCGATTGGTTTCTGGATTCGATGCAGTACGGAATGTTCCTTTTTTCATGA GGGACATTGTCATACTGTGAATGCAGAAGCCATCACCTTTATGAATTTTA AGACGGCTTCTATCTTCGAGACGGCGGCGGTGAGACTGCCACATGAAATC TTTCACTCTCCTCCTTCTGTTTCACAGCACGCCTGGGGGTGCTCCGCTTC AACGGGTCTTTGCCGAGAAGCACACCGGTGGCTTCATCTTGCCTTTCCTT ACGGCTTCAATTCTCATCCTCACTCTTCAGTGGGCGCTTTGCTCGTTTCG TTTGCCCTTGCTCATTGCAGCAAGTCATCGACTGCTTGGAACGCATCGGC GGCCTTAAGGGCGTGGTGGTGCAGCCGACAGCGGGCACCAAGCACGCCTA CGGCTACCGCAGCAAGATCACGCCGCACTTCGACCGCCCGAGTCCTGACG GCACCGTCCACGCCATCGGCTTCCGGCGCACAAAGTTTCCGTCGCCGTTT TATGGCGAGCAGGTGGCGACGGCTTCTGCTGGCATCATCGACGTTCCGCG ATGCGAAATTGCGCGGCCCGCCATCAACGACGCGCTGCCGGCGGTGCGCA CGGCGGCACTCGAGGCAATGCGCCGACGCGCGCGGGGTGTCGCCGCAGCG TTCGGTGGTGGAGGTGGCAGCGGAAGCAGCAACGGCGGCGCAGAGAACGT GACGCCGGCAGCGACGACAGCGCAAAAGCTGATGGGGGCGACGCTGCTAC TGCGGGAAGTAGAGGAGGGCGTGGTGACGGACCACAACGCGCAGGTGAGG AACCTCTCCATTCCCTCCTTTCGCTGGTCCGCTTGTTAGATTTATACCTC ATTGCGTGAGAGCCATAGGCTGCAACTGCTTTGCGAGCAAGTCCATGCAA GTTCAGGAACGGGACTGCTACCACCGCAGATTCGCATGTCTTTTTCGTTC GCCTTTGTTTTGATTTCCCATTCCGTTCCTTTTAAAGATTTGCTGATACG CACACGCCTGCAGGTGATGCAGCGCGTCGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6547:2..2183-

>mRNA_P-wetherbeei_contig6547.1.1 ID=mRNA_P-wetherbeei_contig6547.1.1|Name=mRNA_P-wetherbeei_contig6547.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1101bp|location=Sequence derived from alignment at P-wetherbeei_contig6547:2..2183- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTACCTCACCTGCTTCGGCCGGCGCTCAAGTCGCCACAATCATTGC
TGGCGGGCGCTCGCTGGAGAGCAAAGTCACTACGATAGTCTCGCAACGAA
ACTTAAGGGTGTCGGTTCTTCGGCAAAGGCGGCGCACTATGGTGCTGTGC
CTCTGTTTTCACGCGCTTAAAGGCGCTCGAGGCTATGCTGCTCTCCGACC
GAACATTGTCGCGATGACCGAAGGACTCGCGGCAGCAGCCGGGGTCCCAT
TTCGTGGTTTTTCGCGTCCACCGCCGCGGTTCCGCGACAAGCCTTTCAAA
TATCTCCAAGAGCTGGAAGGCCGCGTCGAAAGCCTGACCAACCTCGGTGA
TGGCGTCCTACGCGTGGACGGCTGGGTCGTCCTCGTCCCGCTGGTGGCGC
CGGGTGAGCGGGTGCGCGTCGCCATCCACAGCACCTACAAGAATCATTCG
GAAGCGACGCTTTTGGAAGTGCTGGAGCGCTCGCTGGATCGCGTCGAGCC
GGAATGCCCCCTCTATGGGGCGTGCGGGGGCTGCCAGTACCAGCATTTGA
GTTTGGAGGCGCAGCGGCGCTGGAAGCGGCAGCAAGTCATCGACTGCTTG
GAACGCATCGGCGGCCTTAAGGGCGTGGTGGTGCAGCCGACAGCGGGCAC
CAAGCACGCCTACGGCTACCGCAGCAAGATCACGCCGCACTTCGACCGCC
CGAGTCCTGACGGCACCGTCCACGCCATCGGCTTCCGGCGCACAAAGTTT
CCGTCGCCGTTTTATGGCGAGCAGGTGGCGACGGCTTCTGCTGGCATCAT
CGACGTTCCGCGATGCGAAATTGCGCGGCCCGCCATCAACGACGCGCTGC
CGGCGGTGCGCACGGCGGCACTCGAGGCAATGCGCCGACGCGCGCGGGGT
GTCGCCGCAGCGTTCGGTGGTGGAGGTGGCAGCGGAAGCAGCAACGGCGG
CGCAGAGAACGTGACGCCGGCAGCGACGACAGCGCAAAAGCTGATGGGGG
CGACGCTGCTACTGCGGGAAGTAGAGGAGGGCGTGGTGACGGACCACAAC
GCGCAGGTGAGGAACCTCTCCATTCCCTCCTTTCGCTGGTCCGCTTGTTA
G
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