mRNA_P-wetherbeei_contig654.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig654.2.1
Unique NamemRNA_P-wetherbeei_contig654.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig654.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig654contigP-wetherbeei_contig654:3793..7642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3850
Hectar predicted targeting categoryother localisation
Exons1
Cds size3588
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186920.850289-UTR-P-wetherbeei_contig654:3792..38151683186920.850289-UTR-P-wetherbeei_contig654:3792..3815Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig654 3793..3815 +
1683186920.878044-UTR-P-wetherbeei_contig654:7403..76421683186920.878044-UTR-P-wetherbeei_contig654:7403..7642Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig654 7404..7642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186920.8599603-CDS-P-wetherbeei_contig654:3815..74031683186920.8599603-CDS-P-wetherbeei_contig654:3815..7403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig654 3816..7403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig654.2.1prot_P-wetherbeei_contig654.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig654 3816..7403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig654.2.1

>prot_P-wetherbeei_contig654.2.1 ID=prot_P-wetherbeei_contig654.2.1|Name=mRNA_P-wetherbeei_contig654.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1196bp
MLTAAAEVDEETEAAGVVAAAAGPATAAAVVAAADGAAEALAVVGADRVS
IMKARTAAAAAAAKAAAAVLAEFDKMLPPSSMVGKGLANPVKEAAYEILG
RGILEAPTGGGGDGGDGDGVGSGDCGGGGEGGGDIVILSGVPPGGAWRRR
LRLLVDARASGQLPADRTRYKFLMALYETFLAPLRTNDRSPAWLPPLLAL
RTLPALSRPGCGEAVQQRVLEAQEAARAAGEAVLAADLEVAAVQPFARAV
KEFAYELLYDQIVKRGDIAEWSAAPRARKGEPARRSARWQGRKASRSIDR
EGSAEDEETDRSDGGTENGADGDEEKDADDGRAGVGENANARAALEAGRR
RREGIGNGGGGGSGGNGNVRGGSGRPDSLKDFETPGAAAMEVNRSEEGGA
DPSGGELAPGPLQVPQLPSLLPLPLPLPLSLGPPHLPSPLPPSRPVSMEE
IHAVAAALNVVEHCGGADPPTLGTVLAWEALASVLGPLPVPDPLAAAAAA
ASPAGAVATAAVAAVSVGKGGGMDAAFSGGDVSDAAAAPRPLRHHPLLGR
RHPGSGRRKMAWWSELFFHEHDATLELLFRDFDEVGAKKQPHKDRRVNRR
TYHRCREAAGKLGDEGLENEDDGSGSGGGGGGSGGAGVERDDRGGSGITG
VEREDSDHKGNASDSNGGNGGYDGNGGDGRGANGDTDGEHVNGVDFSGAF
DVKTSLEGLEPATFVADIYAVAHQHFRFDVVDDDDSDDSGSGGGGGDGFD
MPQHADGPGRAETAQALGNPMNGAGGGDGDAGGGTRVTDGAGGGDEPGTQ
RRRGRGASAGKAKAREPADGDWKGVSFMDVDDVNGASSSDKALGRGAASR
KKASSSGKADKDGDWEPDDESDSEPDEGVEREPGKDRGTKRRHIDSGDAG
GFSCGSGDGNASGGNGDGDASGGTKSKKRGKRTISLALAAAGGFGDDGAD
NDEDGGAGAGAGWSQVDQSQSQAQSVGLGSSGGGADAVPLAPAMLEPADG
ADDVELAALAWEVTVVDTMALAAAKCVVAGHIFGPRHPYCVCVVAGFSRD
RGLSAASLRRALGAAQGRKPWRPFRGNPFLVDVAEAHRRLLATCGFAVGA
SLTKSVFTASQMKTAAGGGRKRSPVGSGQKMAAVGDRAAKGSEKAAAAGG
SEKAAAAGGSEKKAKHPKKKVSKEPAAEPSIVADRAVAAVGNPSS*
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mRNA from alignment at P-wetherbeei_contig654:3793..7642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig654.2.1 ID=mRNA_P-wetherbeei_contig654.2.1|Name=mRNA_P-wetherbeei_contig654.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3850bp|location=Sequence derived from alignment at P-wetherbeei_contig654:3793..7642+ (Phaeothamnion wetherbeei SAG_119_79)
CGAGCAAGAAGGCGGTCTTGCGGATGCTTACGGCGGCCGCTGAGGTAGAC
GAGGAGACTGAGGCGGCGGGCGTAGTGGCGGCGGCGGCGGGCCCGGCGAC
GGCGGCGGCCGTGGTGGCTGCGGCCGACGGCGCGGCAGAGGCCCTGGCGG
TGGTGGGCGCAGATCGAGTGTCGATTATGAAGGCACGCACGGCGGCGGCG
GCGGCTGCTGCAAAGGCGGCAGCCGCAGTGTTGGCAGAGTTCGACAAGAT
GTTGCCGCCATCGTCAATGGTCGGCAAAGGGCTTGCGAATCCCGTCAAGG
AGGCGGCGTACGAAATTTTGGGACGGGGCATCTTGGAGGCTCCTACCGGC
GGTGGCGGCGATGGCGGCGATGGCGATGGGGTCGGCAGCGGCGATTGCGG
CGGCGGCGGCGAAGGCGGCGGAGACATTGTCATTTTGTCGGGGGTGCCGC
CGGGCGGCGCGTGGCGACGCCGACTCAGGCTTCTGGTCGACGCGAGAGCC
TCCGGCCAGCTCCCGGCGGACCGGACGCGCTACAAGTTCCTGATGGCGCT
CTACGAGACCTTCCTGGCCCCGCTTCGGACGAACGATCGTTCACCGGCCT
GGCTCCCACCCCTGCTGGCACTGCGGACGCTGCCAGCCCTCTCCCGGCCG
GGCTGCGGCGAAGCCGTGCAGCAGCGCGTGCTGGAGGCGCAGGAAGCCGC
GCGCGCGGCGGGCGAGGCAGTCCTGGCGGCGGACCTCGAGGTCGCCGCCG
TGCAGCCGTTCGCCAGGGCAGTGAAGGAATTCGCCTACGAGCTACTTTAC
GACCAAATTGTGAAGCGCGGGGACATCGCAGAGTGGTCGGCGGCGCCGCG
GGCGCGCAAGGGCGAACCCGCCCGCCGCTCGGCGCGGTGGCAGGGGCGGA
AGGCATCGCGATCCATCGACAGAGAGGGCTCCGCCGAGGACGAAGAGACC
GACAGGAGCGATGGCGGCACGGAGAACGGCGCCGACGGCGACGAGGAAAA
GGACGCAGACGACGGAAGAGCCGGTGTCGGAGAGAATGCCAACGCGAGGG
CCGCCCTGGAGGCAGGGCGCCGCCGCAGAGAGGGGATTGGCAACGGCGGC
GGCGGCGGCAGCGGCGGCAACGGCAACGTCAGAGGTGGAAGCGGGAGACC
GGACAGCCTCAAAGATTTCGAGACGCCCGGCGCTGCCGCAATGGAGGTGA
ACCGGAGCGAAGAAGGTGGCGCCGATCCCAGCGGCGGCGAGTTGGCCCCG
GGACCGCTGCAGGTGCCGCAGCTGCCATCACTGCTGCCGCTGCCGCTGCC
GTTGCCGCTGTCGCTGGGGCCGCCGCACCTGCCATCGCCACTGCCGCCTT
CACGGCCGGTTTCCATGGAGGAGATACACGCCGTGGCGGCCGCGCTTAAC
GTCGTGGAGCATTGCGGCGGCGCCGACCCGCCGACGCTGGGGACCGTGCT
GGCTTGGGAGGCGCTGGCAAGTGTGTTGGGGCCGCTTCCAGTGCCTGATC
CCCTGGCGGCGGCGGCGGCGGCGGCTTCGCCTGCAGGGGCCGTAGCGACG
GCGGCAGTGGCAGCGGTCAGCGTCGGCAAAGGCGGCGGAATGGACGCAGC
TTTCAGTGGCGGCGACGTGTCGGATGCGGCGGCGGCGCCGCGGCCGCTGC
GGCACCATCCGCTGCTGGGCAGACGCCACCCCGGGTCCGGGCGGCGAAAG
ATGGCGTGGTGGTCGGAATTGTTCTTCCATGAGCACGACGCCACGCTCGA
ACTTCTCTTTCGGGACTTTGACGAGGTTGGCGCGAAGAAGCAACCACATA
AGGACCGGCGTGTGAATCGCAGAACATATCACCGCTGCCGCGAGGCTGCC
GGGAAGCTCGGCGATGAGGGTCTGGAAAACGAGGACGACGGCAGCGGCAG
CGGCGGCGGCGGCGGCGGCTCTGGGGGTGCGGGCGTCGAACGCGACGACA
GGGGCGGCTCTGGCATTACCGGTGTCGAACGCGAGGACAGCGACCATAAG
GGGAATGCCAGCGACAGCAACGGTGGCAATGGTGGCTACGACGGCAACGG
TGGTGATGGCCGCGGTGCAAATGGTGACACCGACGGAGAACACGTCAATG
GTGTCGACTTCAGCGGCGCTTTCGACGTTAAGACTTCGCTAGAAGGCCTC
GAACCGGCCACTTTTGTCGCCGACATATATGCGGTTGCGCACCAACACTT
CCGCTTCGATGTCGTAGATGACGACGATTCAGACGACAGCGGCAGCGGCG
GCGGCGGCGGCGACGGGTTCGACATGCCCCAGCACGCAGATGGGCCCGGC
AGGGCGGAGACCGCTCAGGCATTGGGAAACCCGATGAACGGGGCCGGCGG
TGGCGACGGAGATGCTGGCGGCGGTACCCGTGTCACCGATGGCGCTGGCG
GGGGCGATGAGCCCGGGACGCAGCGCCGGCGCGGCAGAGGCGCGTCGGCA
GGAAAGGCCAAGGCGCGGGAGCCTGCGGACGGGGATTGGAAAGGCGTCAG
CTTCATGGACGTTGATGACGTGAATGGAGCCAGCAGCAGTGACAAAGCGT
TGGGCCGCGGCGCCGCTTCCCGCAAGAAGGCGAGCAGCAGCGGCAAAGCC
GACAAAGACGGCGACTGGGAGCCGGACGACGAGAGCGATTCGGAACCCGA
TGAAGGGGTCGAGCGGGAGCCCGGCAAGGACAGAGGAACGAAGCGCCGCC
ACATCGACAGTGGCGACGCCGGCGGATTCTCCTGTGGCAGCGGCGACGGC
AATGCCAGTGGCGGCAACGGCGACGGGGATGCCAGTGGCGGTACCAAGTC
AAAGAAACGTGGCAAACGGACAATATCACTGGCGCTAGCAGCTGCCGGCG
GCTTTGGCGACGACGGCGCAGACAATGACGAAGACGGCGGCGCCGGTGCT
GGCGCTGGGTGGTCCCAGGTGGACCAGTCGCAGTCCCAGGCGCAGAGCGT
CGGGCTGGGGTCTTCTGGCGGCGGCGCCGACGCGGTGCCGCTGGCACCGG
CCATGCTGGAGCCCGCGGACGGCGCGGACGATGTGGAGCTGGCCGCGCTG
GCGTGGGAGGTGACCGTCGTCGACACGATGGCGCTGGCGGCCGCCAAGTG
CGTTGTGGCAGGGCACATCTTCGGGCCGCGGCACCCGTATTGCGTGTGCG
TGGTGGCGGGCTTCAGCCGCGACCGCGGGCTGTCGGCGGCGTCGTTGCGC
CGTGCTCTGGGCGCCGCCCAGGGCAGGAAGCCATGGAGGCCGTTCCGCGG
GAACCCGTTCCTCGTGGACGTCGCTGAAGCGCACCGCCGCCTCCTGGCGA
CGTGTGGCTTCGCTGTTGGCGCGTCGTTGACGAAGTCGGTGTTCACTGCC
AGCCAAATGAAGACGGCGGCCGGCGGCGGCCGGAAGAGGTCGCCGGTCGG
CAGCGGCCAGAAGATGGCGGCGGTCGGAGACAGGGCGGCCAAAGGCAGCG
AGAAGGCGGCGGCAGCCGGAGGCAGCGAGAAGGCGGCGGCAGCCGGAGGC
AGCGAGAAGAAAGCGAAGCATCCGAAGAAAAAGGTTTCCAAGGAGCCTGC
GGCGGAGCCAAGTATTGTCGCCGATCGGGCCGTGGCGGCAGTGGGGAATC
CAAGCAGCTAGGGGAAGCCCCAAGGATCTGAGCATGCATCGGATACGGCC
ACCTCTGTCGCCACTGCCTCGAGCGGTGACGCCGCTGGGCTCGGCGGCGA
TAATGGCGATGCTGCCGATGGTGCCACCGCCAATACTGGTGCCACTGCTG
TTGGTGCGGGCGGAATTTCTTGAAATTAGAGGCAGGCACGTCTGCTGATT
GTGGCAATTTAACATTTTCTTACATATGCCATGGCACTATGGCAATTATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig654:3793..7642+

>mRNA_P-wetherbeei_contig654.2.1 ID=mRNA_P-wetherbeei_contig654.2.1|Name=mRNA_P-wetherbeei_contig654.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3588bp|location=Sequence derived from alignment at P-wetherbeei_contig654:3793..7642+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTACGGCGGCCGCTGAGGTAGACGAGGAGACTGAGGCGGCGGGCGT
AGTGGCGGCGGCGGCGGGCCCGGCGACGGCGGCGGCCGTGGTGGCTGCGG
CCGACGGCGCGGCAGAGGCCCTGGCGGTGGTGGGCGCAGATCGAGTGTCG
ATTATGAAGGCACGCACGGCGGCGGCGGCGGCTGCTGCAAAGGCGGCAGC
CGCAGTGTTGGCAGAGTTCGACAAGATGTTGCCGCCATCGTCAATGGTCG
GCAAAGGGCTTGCGAATCCCGTCAAGGAGGCGGCGTACGAAATTTTGGGA
CGGGGCATCTTGGAGGCTCCTACCGGCGGTGGCGGCGATGGCGGCGATGG
CGATGGGGTCGGCAGCGGCGATTGCGGCGGCGGCGGCGAAGGCGGCGGAG
ACATTGTCATTTTGTCGGGGGTGCCGCCGGGCGGCGCGTGGCGACGCCGA
CTCAGGCTTCTGGTCGACGCGAGAGCCTCCGGCCAGCTCCCGGCGGACCG
GACGCGCTACAAGTTCCTGATGGCGCTCTACGAGACCTTCCTGGCCCCGC
TTCGGACGAACGATCGTTCACCGGCCTGGCTCCCACCCCTGCTGGCACTG
CGGACGCTGCCAGCCCTCTCCCGGCCGGGCTGCGGCGAAGCCGTGCAGCA
GCGCGTGCTGGAGGCGCAGGAAGCCGCGCGCGCGGCGGGCGAGGCAGTCC
TGGCGGCGGACCTCGAGGTCGCCGCCGTGCAGCCGTTCGCCAGGGCAGTG
AAGGAATTCGCCTACGAGCTACTTTACGACCAAATTGTGAAGCGCGGGGA
CATCGCAGAGTGGTCGGCGGCGCCGCGGGCGCGCAAGGGCGAACCCGCCC
GCCGCTCGGCGCGGTGGCAGGGGCGGAAGGCATCGCGATCCATCGACAGA
GAGGGCTCCGCCGAGGACGAAGAGACCGACAGGAGCGATGGCGGCACGGA
GAACGGCGCCGACGGCGACGAGGAAAAGGACGCAGACGACGGAAGAGCCG
GTGTCGGAGAGAATGCCAACGCGAGGGCCGCCCTGGAGGCAGGGCGCCGC
CGCAGAGAGGGGATTGGCAACGGCGGCGGCGGCGGCAGCGGCGGCAACGG
CAACGTCAGAGGTGGAAGCGGGAGACCGGACAGCCTCAAAGATTTCGAGA
CGCCCGGCGCTGCCGCAATGGAGGTGAACCGGAGCGAAGAAGGTGGCGCC
GATCCCAGCGGCGGCGAGTTGGCCCCGGGACCGCTGCAGGTGCCGCAGCT
GCCATCACTGCTGCCGCTGCCGCTGCCGTTGCCGCTGTCGCTGGGGCCGC
CGCACCTGCCATCGCCACTGCCGCCTTCACGGCCGGTTTCCATGGAGGAG
ATACACGCCGTGGCGGCCGCGCTTAACGTCGTGGAGCATTGCGGCGGCGC
CGACCCGCCGACGCTGGGGACCGTGCTGGCTTGGGAGGCGCTGGCAAGTG
TGTTGGGGCCGCTTCCAGTGCCTGATCCCCTGGCGGCGGCGGCGGCGGCG
GCTTCGCCTGCAGGGGCCGTAGCGACGGCGGCAGTGGCAGCGGTCAGCGT
CGGCAAAGGCGGCGGAATGGACGCAGCTTTCAGTGGCGGCGACGTGTCGG
ATGCGGCGGCGGCGCCGCGGCCGCTGCGGCACCATCCGCTGCTGGGCAGA
CGCCACCCCGGGTCCGGGCGGCGAAAGATGGCGTGGTGGTCGGAATTGTT
CTTCCATGAGCACGACGCCACGCTCGAACTTCTCTTTCGGGACTTTGACG
AGGTTGGCGCGAAGAAGCAACCACATAAGGACCGGCGTGTGAATCGCAGA
ACATATCACCGCTGCCGCGAGGCTGCCGGGAAGCTCGGCGATGAGGGTCT
GGAAAACGAGGACGACGGCAGCGGCAGCGGCGGCGGCGGCGGCGGCTCTG
GGGGTGCGGGCGTCGAACGCGACGACAGGGGCGGCTCTGGCATTACCGGT
GTCGAACGCGAGGACAGCGACCATAAGGGGAATGCCAGCGACAGCAACGG
TGGCAATGGTGGCTACGACGGCAACGGTGGTGATGGCCGCGGTGCAAATG
GTGACACCGACGGAGAACACGTCAATGGTGTCGACTTCAGCGGCGCTTTC
GACGTTAAGACTTCGCTAGAAGGCCTCGAACCGGCCACTTTTGTCGCCGA
CATATATGCGGTTGCGCACCAACACTTCCGCTTCGATGTCGTAGATGACG
ACGATTCAGACGACAGCGGCAGCGGCGGCGGCGGCGGCGACGGGTTCGAC
ATGCCCCAGCACGCAGATGGGCCCGGCAGGGCGGAGACCGCTCAGGCATT
GGGAAACCCGATGAACGGGGCCGGCGGTGGCGACGGAGATGCTGGCGGCG
GTACCCGTGTCACCGATGGCGCTGGCGGGGGCGATGAGCCCGGGACGCAG
CGCCGGCGCGGCAGAGGCGCGTCGGCAGGAAAGGCCAAGGCGCGGGAGCC
TGCGGACGGGGATTGGAAAGGCGTCAGCTTCATGGACGTTGATGACGTGA
ATGGAGCCAGCAGCAGTGACAAAGCGTTGGGCCGCGGCGCCGCTTCCCGC
AAGAAGGCGAGCAGCAGCGGCAAAGCCGACAAAGACGGCGACTGGGAGCC
GGACGACGAGAGCGATTCGGAACCCGATGAAGGGGTCGAGCGGGAGCCCG
GCAAGGACAGAGGAACGAAGCGCCGCCACATCGACAGTGGCGACGCCGGC
GGATTCTCCTGTGGCAGCGGCGACGGCAATGCCAGTGGCGGCAACGGCGA
CGGGGATGCCAGTGGCGGTACCAAGTCAAAGAAACGTGGCAAACGGACAA
TATCACTGGCGCTAGCAGCTGCCGGCGGCTTTGGCGACGACGGCGCAGAC
AATGACGAAGACGGCGGCGCCGGTGCTGGCGCTGGGTGGTCCCAGGTGGA
CCAGTCGCAGTCCCAGGCGCAGAGCGTCGGGCTGGGGTCTTCTGGCGGCG
GCGCCGACGCGGTGCCGCTGGCACCGGCCATGCTGGAGCCCGCGGACGGC
GCGGACGATGTGGAGCTGGCCGCGCTGGCGTGGGAGGTGACCGTCGTCGA
CACGATGGCGCTGGCGGCCGCCAAGTGCGTTGTGGCAGGGCACATCTTCG
GGCCGCGGCACCCGTATTGCGTGTGCGTGGTGGCGGGCTTCAGCCGCGAC
CGCGGGCTGTCGGCGGCGTCGTTGCGCCGTGCTCTGGGCGCCGCCCAGGG
CAGGAAGCCATGGAGGCCGTTCCGCGGGAACCCGTTCCTCGTGGACGTCG
CTGAAGCGCACCGCCGCCTCCTGGCGACGTGTGGCTTCGCTGTTGGCGCG
TCGTTGACGAAGTCGGTGTTCACTGCCAGCCAAATGAAGACGGCGGCCGG
CGGCGGCCGGAAGAGGTCGCCGGTCGGCAGCGGCCAGAAGATGGCGGCGG
TCGGAGACAGGGCGGCCAAAGGCAGCGAGAAGGCGGCGGCAGCCGGAGGC
AGCGAGAAGGCGGCGGCAGCCGGAGGCAGCGAGAAGAAAGCGAAGCATCC
GAAGAAAAAGGTTTCCAAGGAGCCTGCGGCGGAGCCAAGTATTGTCGCCG
ATCGGGCCGTGGCGGCAGTGGGGAATCCAAGCAGCTAG
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