mRNA_P-wetherbeei_contig6527.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6527.2.1
Unique NamemRNA_P-wetherbeei_contig6527.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Match: A0A7S4N6E6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N6E6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.780e-12
Identity = 60/229 (26.20%), Postives = 98/229 (42.79%), Query Frame = 1
Query:    1 VWTEPETGLSFLRELPG----DGRGRPTQTLIGGGVYTKALM-FKIYALAFYADVPRVLAAPELQAFRDAAAAXXXXXXXXXXXXXXXXXXXXASLMSAMARSSSFDRSISLRLSM-----AVSRDTAIAAMNSDFDLTPLEKRLLVGTALKS----------------ADATCCGAGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNYVGGN-PVSPPSRD 606
            VW +P+TGL +L +L G    D       TL+G G+YT+ +   K+Y  A+YA    VL  P    F    A                     A   +   + +    + ++R S+      ++ +     ++S F      + +L     K                 AD  CC  GTEL+FT R++GDLE+ +DGR++D  +  GL   ++  Y+ G+ P+S  +RD
Sbjct:  536 VWEDPQTGLEYLTDLSGYLGHDRMETGRHTLMGVGLYTRTVFNIKVYGCAYYAAKRDVLGHPGYAPFATMTAEELRVRDDFYELLMGFPSEEGAVDRTVFLKMNMQLATETMRTSLDADWSQMTTEQKNMLISSSFKERAANEAMLRKIRSKENTSRCSCGQSAPPEYEADPGCCARGTELVFTWRKNGDLELRIDGRVMDIFKEPGLGRAIFYEYLRGDEPMSMDARD 764          
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Match: A0A7S3L295_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L295_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.520e-12
Identity = 63/227 (27.75%), Postives = 96/227 (42.29%), Query Frame = 1
Query:    1 VWTEPETGLSF----LRELPGDGRGRPTQTLIGGGVYTKALMFKIYALAFYADVPRVLAAPELQAFRDAAAAXXXXXXXXXXXXXXXXXXXXASLMSAMARSSSFD--RSISLRLSMAVSRDTAIAAM-NSDFDLTPLEKRLLVGTALKS-----------------ADATCCGAGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNYVG-GNPVSPPSRD 606
            +WT+P+TGL +     R L  D +    QTL+G G Y K  + K+Y +AFY     VLA P    +   +                       +++  +    + D  RS SL     +  D A  A+ NS     P     L   A ++                 AD  CC  GTEL FT  ++G+LEV L+G L++T     +++G+   Y+   +P+SP  RD
Sbjct:  410 IWTDPQTGLEYPTDLTRYLKNDRKAEGRQTLMGVGQYIKGYVIKVYGVAFYVSKRDVLADPFFADYAHMSPDELKTHPEFYEHLRTDAENFERTIVIKINMQLAADTIRS-SLHADWKMLTDEAKNALINSSLQPRPATPEFLEVVADETNNPGRCSCGQVCPPEYEADLDCCARGTELAFTWLKTGELEVRLNGELMETFPRPDIAKGILFEYLRYDDPISPQFRD 635          
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Match: A0A7R9WC84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WC84_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.830e-12
Identity = 57/218 (26.15%), Postives = 93/218 (42.66%), Query Frame = 1
Query:    1 VWTEPETGLSFLRELPG----DGRGRPTQTLIGGGVYTKALM-FKIYALAFYADVPRVLAAPELQAFRDAAAAXXXXXXXXXXXXXXXXXXXXASL---MSAMARSSSFDRSISLRLSMAVSRDTAIAAMNSDFDLTPLEKRLLVGTALKS----------------ADATCCGAGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNYVGGN 582
            VW +P+T L +L +L G    D R +   TL+G G+YT+ +   K+Y  AFYA    VLA P    F    A+                     +L   M+    + +   S+    S+      ++  ++S F     ++R+L     K                 AD  CC  GTEL+FT ++ G LE+ +DGR++D     G+   ++  Y+ G+
Sbjct:  168 VWEDPQTKLEYLTDLSGYLGHDRREKGRHTLMGVGLYTRTVFNIKVYGCAFYATKRDVLADPSYAPFAAMDASDLRSRDDFYDLLMSESSRVDRTLFLQMNMQLATETMRTSLDADWSLMTPEHKSLL-ISSSFRERNADERMLRRIKSKENSSRCSCGQKAPPEYEADPECCARGTELVFTWKKDGTLELRIDGRIMDAFDDPGIGRAIFYEYLRGD 384          
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Match: A0A6U3P9D6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3P9D6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.880e-9
Identity = 62/232 (26.72%), Postives = 102/232 (43.97%), Query Frame = 1
Query:    1 VWTEPETGLSFLRELP---GDGR---GRPTQTLIGGGVYTKALM-FKIYALAFYADVPRVLAAPELQAFRDAAA-----AXXXXXXXXXXXXXXXXXXXXASLMSAMARSSSFDRSISLRLSMAVSRDTAIAAM-NSDFDLTPLEKRLLV----------------GTALKSADATCCGAGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNYV-GGNPVSPPSRD 606
            +W +P TGL +L +L    G  R   GR   TL+G G + K ++  K+Y +A Y     VLA P       ++A                            L+    + S+     SL+    +  D     + ++ F     ++++L                   A  +AD +CC  GT+L+FT R++GDLEV LDGRL+D+     L++G++  Y+ G +P+S  +RD
Sbjct:  539 LWEDPATGLRYLTDLCEYLGHERKEVGR--HTLVGVGQFVKTMLKIKVYGVALYLSKRDVLADPNFVPHARSSADELRQGDGLYNYLMNAPSSSGGRIDRTLLLKLNMQLSTETMRTSLQADWKLLTDEHKEMLVSTSFKPRDADEKMLQKIKSEENSSNCSCGQNAPAEYNADPSCCARGTDLVFTWRKNGDLEVRLDGRLIDSFPVPDLAKGIFYEYLRGDDPMSVDARD 768          
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Match: A0A7S2UL26_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UL26_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.510e-8
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  430 ADATCCGAGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNYVGGNPVSPPSRD 606
            AD +CC  GTEL FT R++GDLEV LDGR+VD+     ++ G++  Y+  +P+S  +R+
Sbjct:  459 ADPSCCARGTELAFTWRKTGDLEVRLDGRIVDSWPRPDMASGIFFEYLSDDPISRDARE 517          
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Match: A0A7S2N3G5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N3G5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.640e-8
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  430 ADATCCGAGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNYV-GGNPVSPPSRD 606
            AD +CC  GT+L+FT R++GDLE+ LDGRL+D+     +  G++  Y+ G +P+S  +RD
Sbjct:   58 ADPSCCARGTDLVFTWRKNGDLEIRLDGRLMDSFPDPDIGSGIFYEYLRGDDPMSVDARD 117          
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Match: A0A7S4N5V0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5V0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.510e-7
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  430 ADATCCGAGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNYVGGN-PVSPPSRD 606
            AD  CC  GTEL+FT R++GDLE+ +DGR++D  +  GL   ++  Y+ G+ P+S  +RD
Sbjct:  132 ADPGCCARGTELVFTWRKNGDLELRIDGRVMDIFKEPGLGRAIFYEYLRGDEPMSMDARD 191          
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Match: A0A7S0BW36_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BW36_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.560e-7
Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  427 SADATCCGAGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNYVG-GNPVSPPSRD 606
            +AD++CC  GTEL+FT R++ DLEV LDGRL+DT +   L++G++  Y    +P+S  +R+
Sbjct:  112 AADSSCCARGTELVFTWRKNLDLEVRLDGRLMDTFQDPALAKGIFFEYFREDDPMSVDARE 172          
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Match: B7FXP3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXP3_PHATC)

HSP 1 Score: 60.1 bits (144), Expect = 4.250e-7
Identity = 55/222 (24.77%), Postives = 90/222 (40.54%), Query Frame = 1
Query:    1 VWTEPETGLSFLRELPG----DGRGRPTQTLIGGGVYTKALMFKIYALAFYADVPRVLAAPELQAFRDAAAAXXXXXXXXXXXXXXXXXXXXASLMSAMARSSSFDRSISLRLSMAVSRDTAIA------------AMNSDFDLTPLEKRLL----------------VGTALKSADATCCGAGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNY 570
            VWT+P TGL +  +L G    D + +   TL+G G Y K ++ K+Y +A+Y     VL++  +  F   AA                            +   +     +++L+    R++  A             +NS     P  +  L                V      ADA CC  GTEL FT R++GDLEV L+ RL++T +   +++ ++  Y
Sbjct:  330 VWTDPHTGLEYQTDLCGYLGHDRKEKGRHTLMGVGQYKKFVV-KVYGIAYYVSKRDVLSSNHV--FEPFAALSTAELRKRPDFYEHLRHMQSPESPDRGSFERTLMIKTNMQLAAETIRNSLHADWKMLTEEAKHLLINSSIQPRPANQETLALIQSPNNPSRCSCSQVAPPEYQADADCCARGTELAFTWRKNGDLEVRLNRRLMETFQRPDIAQAIFYEY 548          
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Match: A0A7S1GNX8_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNX8_CYCTE)

HSP 1 Score: 56.6 bits (135), Expect = 5.080e-6
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:  430 ADATCCGAGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNYVG-GNPVSPPSRD 606
            AD +CC  GTEL FT R++GDLEV +D R++D       +EG++  Y+   +P+SP  R+
Sbjct:   39 ADKSCCARGTELAFTWRKNGDLEVRVDKRIMDIFPRPDAAEGIFFEYLRHDDPISPDFRE 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6527.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S4N6E6_9STRA5.780e-1226.20Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3L295_9STRA7.520e-1227.75Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7R9WC84_9STRA9.830e-1226.15Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A6U3P9D6_9STRA1.880e-926.72Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2UL26_9STRA1.510e-845.76Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2N3G5_9STRA4.640e-845.00Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4N5V0_9STRA1.510e-745.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0BW36_9STRA3.560e-745.90Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7FXP3_PHATC4.250e-724.77Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1GNX8_CYCTE5.080e-643.33Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6527contigP-wetherbeei_contig6527:2733..3338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0TMV2
Model size606
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.59e-09
EggNOG OGs29PM6@1|root,2RWYV@2759|Eukaryota,2XAU7@2836|Bacillariophyta
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186920.144214-CDS-P-wetherbeei_contig6527:2732..33381683186920.144214-CDS-P-wetherbeei_contig6527:2732..3338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6527 2733..3338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6527.2.1prot_P-wetherbeei_contig6527.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6527 2733..3338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6527.2.1

>prot_P-wetherbeei_contig6527.2.1 ID=prot_P-wetherbeei_contig6527.2.1|Name=mRNA_P-wetherbeei_contig6527.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp
VWTEPETGLSFLRELPGDGRGRPTQTLIGGGVYTKALMFKIYALAFYADV
PRVLAAPELQAFRDAAAAAAAFVGAGAAATTAAARAGAASLMSAMARSSS
FDRSISLRLSMAVSRDTAIAAMNSDFDLTPLEKRLLVGTALKSADATCCG
AGTELLFTSRRSGDLEVYLDGRLVDTLRTDGLSEGLWRNYVGGNPVSPPS
RD
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mRNA from alignment at P-wetherbeei_contig6527:2733..3338-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6527.2.1 ID=mRNA_P-wetherbeei_contig6527.2.1|Name=mRNA_P-wetherbeei_contig6527.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig6527:2733..3338- (Phaeothamnion wetherbeei SAG_119_79)
GTTTGGACAGAGCCGGAGACCGGACTGTCCTTCCTGCGGGAGCTGCCGGG CGACGGGCGCGGACGGCCGACGCAGACGCTAATTGGTGGCGGCGTCTACA CCAAGGCGCTGATGTTCAAAATCTACGCGCTGGCCTTTTACGCTGACGTC CCTCGGGTGCTGGCGGCGCCGGAGTTGCAGGCGTTTCGGGATGCTGCGGC GGCAGCGGCGGCGTTCGTTGGCGCGGGGGCGGCGGCGACCACGGCGGCGG CGCGGGCGGGCGCCGCCAGCCTGATGTCGGCAATGGCGCGGTCGTCGTCG TTCGACAGGAGCATTTCCCTGCGGCTATCGATGGCGGTGTCGCGCGACAC GGCCATCGCCGCAATGAACTCGGACTTCGACCTGACGCCTCTAGAGAAGC GGCTGCTGGTTGGCACAGCGCTCAAGAGCGCCGATGCGACCTGCTGCGGC GCCGGCACGGAGCTGCTCTTTACAAGTCGCCGGAGCGGCGACCTTGAGGT GTACCTCGATGGACGCCTGGTGGACACGCTACGTACCGACGGTCTCTCCG AGGGACTTTGGCGGAACTACGTCGGCGGCAACCCGGTATCGCCACCCTCG CGGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6527:2733..3338-

>mRNA_P-wetherbeei_contig6527.2.1 ID=mRNA_P-wetherbeei_contig6527.2.1|Name=mRNA_P-wetherbeei_contig6527.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig6527:2733..3338- (Phaeothamnion wetherbeei SAG_119_79)
GTTTGGACAGAGCCGGAGACCGGACTGTCCTTCCTGCGGGAGCTGCCGGG
CGACGGGCGCGGACGGCCGACGCAGACGCTAATTGGTGGCGGCGTCTACA
CCAAGGCGCTGATGTTCAAAATCTACGCGCTGGCCTTTTACGCTGACGTC
CCTCGGGTGCTGGCGGCGCCGGAGTTGCAGGCGTTTCGGGATGCTGCGGC
GGCAGCGGCGGCGTTCGTTGGCGCGGGGGCGGCGGCGACCACGGCGGCGG
CGCGGGCGGGCGCCGCCAGCCTGATGTCGGCAATGGCGCGGTCGTCGTCG
TTCGACAGGAGCATTTCCCTGCGGCTATCGATGGCGGTGTCGCGCGACAC
GGCCATCGCCGCAATGAACTCGGACTTCGACCTGACGCCTCTAGAGAAGC
GGCTGCTGGTTGGCACAGCGCTCAAGAGCGCCGATGCGACCTGCTGCGGC
GCCGGCACGGAGCTGCTCTTTACAAGTCGCCGGAGCGGCGACCTTGAGGT
GTACCTCGATGGACGCCTGGTGGACACGCTACGTACCGACGGTCTCTCCG
AGGGACTTTGGCGGAACTACGTCGGCGGCAACCCGGTATCGCCACCCTCG
CGGGAC
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