mRNA_P-wetherbeei_contig6526.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6526.1.1
Unique NamemRNA_P-wetherbeei_contig6526.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6526.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6526contigP-wetherbeei_contig6526:962..1976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size766
Hectar predicted targeting categoryother localisation
Exons2
Cds size546
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.9898684-UTR-P-wetherbeei_contig6526:961..11711683186919.9898684-UTR-P-wetherbeei_contig6526:961..1171Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6526 962..1171 -
1683186920.0202127-UTR-P-wetherbeei_contig6526:1966..19761683186920.0202127-UTR-P-wetherbeei_contig6526:1966..1976Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6526 1967..1976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186920.000472-CDS-P-wetherbeei_contig6526:1171..13141683186920.000472-CDS-P-wetherbeei_contig6526:1171..1314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6526 1172..1314 -
1683186920.0108159-CDS-P-wetherbeei_contig6526:1563..19661683186920.0108159-CDS-P-wetherbeei_contig6526:1563..1966Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6526 1564..1966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6526.1.1prot_P-wetherbeei_contig6526.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6526 1172..1966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6526.1.1

>prot_P-wetherbeei_contig6526.1.1 ID=prot_P-wetherbeei_contig6526.1.1|Name=mRNA_P-wetherbeei_contig6526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MGFGNPNQPEASGKARRRIVAAAKNSACDSANAASNGSFISYGDAGSYSG
GGHAQGNTRGNGRNGSGHSRQSSGSAWFVPGSKYGGYESGDARPVVSDDT
DDDLLLQADHFVQAVDKTVWVVEASTKVVWRVARVAFGGITAVGMTVFAT
ALRSVRLLWYRTYGTTPAAGLIPLSYRRQQC*
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mRNA from alignment at P-wetherbeei_contig6526:962..1976-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6526.1.1 ID=mRNA_P-wetherbeei_contig6526.1.1|Name=mRNA_P-wetherbeei_contig6526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1015bp|location=Sequence derived from alignment at P-wetherbeei_contig6526:962..1976- (Phaeothamnion wetherbeei SAG_119_79)
GGAGCAGGAGATGGGATTTGGTAACCCGAACCAACCTGAGGCGTCCGGCA
AGGCACGGCGACGCATCGTTGCGGCGGCGAAAAATTCCGCCTGTGATTCT
GCGAATGCTGCGAGCAACGGAAGCTTCATATCCTATGGCGACGCGGGCAG
CTACAGCGGCGGTGGTCACGCCCAAGGCAACACCCGCGGTAACGGCCGCA
ACGGCAGCGGCCACAGCCGGCAGAGCTCGGGCAGCGCCTGGTTTGTGCCC
GGCTCCAAGTACGGCGGATACGAAAGCGGCGATGCGCGACCCGTCGTCAG
TGATGATACCGATGACGACCTGCTTCTCCAGGCGGATCACTTCGTCCAGG
CGGTCGACAAGACTGTGTGGGTGGTGGAAGCGTCAACAAAAGTCGTGTGG
CGCGTGGCACGAGGTGAGTGAGAACGGGATCGCCTTGGGCTGACGCACTG
TCAGCCGGCGGAAAAAGGGCTGCCTCTTCTTCCACTGTGTGTTTGCGTGT
CGAGGTCCACTACTCATTCTCCGCCCTTTTTGGGGGCGGCAGTCTTCTCA
CCTTCCTGACACGCTGCAATGCCTCTATTTCCTTTACTCCTCTAATGACG
CCCGCCATCATCTGCACTTCTTTCGCACCCACCATGATGCTCCGCCGGTC
GCTCGGTCGCAGTTGCCTTTGGCGGCATTACAGCTGTGGGAATGACCGTG
TTCGCGACCGCCCTTCGCAGCGTGCGGTTGCTGTGGTACCGCACGTACGG
CACAACGCCAGCAGCAGGGCTGATTCCTCTTTCGTACCGTCGCCAACAGT
GCTGAGAACGGAGCTTCGAAGGCGCGGCGAACGGGGGTACATGCACCAAC
AGCGCGTTTGTTTAACGGCAGCTGGCAGGCGGTGGAAGGTCCGGAGGCGC
TCTTTCGGATATCAGGGACTGTAAACCCGACCTGTGATATCCAACTGTCG
TATTCCTTGGCTACGTTGGTGGAGGCATATTGTGCTTTGTTATGAGGTAG
GAAACGAGTGAGTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6526:962..1976-

>mRNA_P-wetherbeei_contig6526.1.1 ID=mRNA_P-wetherbeei_contig6526.1.1|Name=mRNA_P-wetherbeei_contig6526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig6526:962..1976- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGATTTGGTAACCCGAACCAACCTGAGGCGTCCGGCAAGGCACGGCG
ACGCATCGTTGCGGCGGCGAAAAATTCCGCCTGTGATTCTGCGAATGCTG
CGAGCAACGGAAGCTTCATATCCTATGGCGACGCGGGCAGCTACAGCGGC
GGTGGTCACGCCCAAGGCAACACCCGCGGTAACGGCCGCAACGGCAGCGG
CCACAGCCGGCAGAGCTCGGGCAGCGCCTGGTTTGTGCCCGGCTCCAAGT
ACGGCGGATACGAAAGCGGCGATGCGCGACCCGTCGTCAGTGATGATACC
GATGACGACCTGCTTCTCCAGGCGGATCACTTCGTCCAGGCGGTCGACAA
GACTGTGTGGGTGGTGGAAGCGTCAACAAAAGTCGTGTGGCGCGTGGCAC
GAGTTGCCTTTGGCGGCATTACAGCTGTGGGAATGACCGTGTTCGCGACC
GCCCTTCGCAGCGTGCGGTTGCTGTGGTACCGCACGTACGGCACAACGCC
AGCAGCAGGGCTGATTCCTCTTTCGTACCGTCGCCAACAGTGCTGA
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