mRNA_P-wetherbeei_contig6525.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6525.1.1
Unique NamemRNA_P-wetherbeei_contig6525.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6525.1.1 vs. uniprot
Match: D8LT32_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT32_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 6.880e-21
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    4 SCAGKRQRLTRSSVLAACQDNNQTVSAAGGCWSRDGAYAERCVAVGWSQTAFVATCSGISGTNGRCGTFLELHVAYSNDYYDGEDVLAETQVRT 285
            SC G RQ+  RS+ +A C DNNQTV A   C +  G  +E C+AVG+SQTA    C G    +  CGTFLELHV Y+N Y D EDVL+E ++ T
Sbjct:  137 SCVGFRQKQQRSTSVARCTDNNQTVDAGSSCQNLAGEVSEHCLAVGYSQTAISVICGGDFAEDDHCGTFLELHVGYANYYADPEDVLSEVRLLT 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6525.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT32_ECTSI6.880e-2151.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6525contigP-wetherbeei_contig6525:236..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LT32
Model size294
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.13e-21
EggNOG OGs2CM7C@1|root,2QPIH@2759|Eukaryota
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.9191515-CDS-P-wetherbeei_contig6525:235..5291683186919.9191515-CDS-P-wetherbeei_contig6525:235..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6525 236..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6525.1.1prot_P-wetherbeei_contig6525.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6525 236..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6525.1.1

>prot_P-wetherbeei_contig6525.1.1 ID=prot_P-wetherbeei_contig6525.1.1|Name=mRNA_P-wetherbeei_contig6525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
SSCAGKRQRLTRSSVLAACQDNNQTVSAAGGCWSRDGAYAERCVAVGWSQ
TAFVATCSGISGTNGRCGTFLELHVAYSNDYYDGEDVLAETQVRTGFP
back to top

mRNA from alignment at P-wetherbeei_contig6525:236..529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6525.1.1 ID=mRNA_P-wetherbeei_contig6525.1.1|Name=mRNA_P-wetherbeei_contig6525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig6525:236..529+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTCCTGCGCGGGAAAGCGGCAGCGCCTGACGCGCTCTAGCGTCCTGGC
GGCCTGCCAGGACAACAACCAGACGGTATCCGCCGCAGGCGGGTGCTGGA
GCCGGGACGGAGCCTACGCAGAGCGCTGCGTCGCTGTCGGCTGGTCTCAG
ACGGCATTCGTCGCCACCTGCAGCGGCATCAGCGGCACCAACGGCCGCTG
CGGAACGTTCCTGGAGCTGCACGTCGCCTATAGCAACGACTACTACGATG
GGGAGGACGTACTGGCGGAAACGCAGGTGAGGACAGGTTTCCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6525:236..529+

>mRNA_P-wetherbeei_contig6525.1.1 ID=mRNA_P-wetherbeei_contig6525.1.1|Name=mRNA_P-wetherbeei_contig6525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig6525:236..529+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTCCTGCGCGGGAAAGCGGCAGCGCCTGACGCGCTCTAGCGTCCTGGC
GGCCTGCCAGGACAACAACCAGACGGTATCCGCCGCAGGCGGGTGCTGGA
GCCGGGACGGAGCCTACGCAGAGCGCTGCGTCGCTGTCGGCTGGTCTCAG
ACGGCATTCGTCGCCACCTGCAGCGGCATCAGCGGCACCAACGGCCGCTG
CGGAACGTTCCTGGAGCTGCACGTCGCCTATAGCAACGACTACTACGATG
GGGAGGACGTACTGGCGGAAACGCAGGTGAGGACAGGTTTCCCG
back to top