mRNA_P-wetherbeei_contig652.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig652.6.1
Unique NamemRNA_P-wetherbeei_contig652.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Match: D7FSH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH2_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 5.190e-84
Identity = 152/248 (61.29%), Postives = 177/248 (71.37%), Query Frame = 1
Query:    1 PCATCGDPGRYGCSRCS----RVRYCSRACQELHYRRYHKAVCAATCAARKAGLSLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHLNRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAHVQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAKFTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVEL 732
            PCA CG P    C+ CS    RV YCS ACQ+ H+R +HK  C    +   AGLSL     A+RGKAGL NLGNTCFL+SAVQCLSHV PLTR++LS+ F+  LN  NPLGTGGRL  AY+ VLKELWFGS  SV+P+ L+ AI+  AP F  + Q DSQEVLSFLLDGLHEDLNRV KKP + +PDG CGRPD+ +AAE+W  F  RD S LV   YGQFKSTL C   CG +SRKF+EFN + VEL
Sbjct:  901 PCAACGAPSNKKCTSCSKTQHRVSYCSPACQKAHWR-FHKKFCGGKGSG--AGLSL-----AKRGKAGLDNLGNTCFLNSAVQCLSHVQPLTRHVLSNAFQEDLNLTNPLGTGGRLVQAYEQVLKELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVLKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQ-CGKLSRKFDEFNVMPVEL 1139          
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Match: A0A6H5L229_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L229_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 4.810e-83
Identity = 151/248 (60.89%), Postives = 177/248 (71.37%), Query Frame = 1
Query:    1 PCATCGDPGRYGCSRCS----RVRYCSRACQELHYRRYHKAVCAATCAARKAGLSLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHLNRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAHVQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAKFTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVEL 732
            PCA CG P +  C+ CS    RV YCS ACQ+ H+R +HK  C    +    GLSL     A+RGKAGL NLGNTCFL+SAVQCLSHV PLTR++LS+ F+  LN  NPLGTGGRL  AY+ VLKELWFGS  SV+P+ L+ AI+  AP F  + Q DSQEVLSFLLDGLHEDLNRV KKP + +PDG CGRPD+ +AAE+W  F  RD S LV   YGQFKSTL C   CG +SRKF+EFN + VEL
Sbjct:  952 PCAACGAPCKKKCTSCSKTQHRVSYCSPACQKAHWR-FHKKFCGGKGSGT--GLSL-----AKRGKAGLDNLGNTCFLNSAVQCLSHVQPLTRHVLSNAFQEDLNLTNPLGTGGRLVQAYEQVLKELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVLKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQ-CGKLSRKFDEFNVMPVEL 1190          
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Match: D0N8U1_PHYIT (Ubiquitin carboxyl-terminal hydrolase n=26 Tax=Phytophthora TaxID=4783 RepID=D0N8U1_PHYIT)

HSP 1 Score: 235 bits (600), Expect = 3.680e-68
Identity = 128/259 (49.42%), Postives = 163/259 (62.93%), Query Frame = 1
Query:    4 CATCGDP--GRYGCSRCSRVRYCSRACQELHYRRYHKAVCAATCAAR-KAGLSLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHLNRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAHVQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAKFTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVELPSRGLRPLDVLVV 771
            C  C  P      C  C  + YC   CQ  H++ YHK VC +T  A  K    L  L   RRGK GL NLGNTCF++SA+QCLSHV  LTRY LS+R++  LNR NPLGTGG L + YD +LKELWFG+ PS +P  L+ AIS  AP F    QHD+QE+L++++DGLHEDLNRV+ KP   + +    + DAAVA EAW +   R+ S  V    GQFKST+VCP  C  VS  F+ FN + +ELP +  R ++V+ V
Sbjct:  251 CGACRKPTGSLKRCGSCQLIWYCGANCQMSHWK-YHKGVCRSTLTAEEKEDDILQGLQAERRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNRYKKDLNRDNPLGTGGNLAEEYDGLLKELWFGTVPSTSPANLKRAISRFAPQFSGFQQHDAQELLAYIIDGLHEDLNRVKHKPYTEVNESDGSQDDAAVAKEAWQRHLLRNDSIFVDHVQGQFKSTVVCPI-CNKVSITFDPFNCIQLELPQQQNRQIEVIFV 507          
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Match: H3GWC2_PHYRM (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GWC2_PHYRM)

HSP 1 Score: 235 bits (599), Expect = 4.840e-68
Identity = 124/246 (50.41%), Postives = 160/246 (65.04%), Query Frame = 1
Query:   37 CSRCSRVRYCSRACQELHYRRYHKAVCAATCAAR-KAGLSLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHLNRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAHVQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAKFTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVELPSRGLRPLDVLVV 771
            C  C  + YC   CQ  H++ YHK VC +T +A  K    L  L   RRGK GL NLGNTCF++SA+QCLSHV  LTRY LS+R++  LNR NPLGTGG L + YD +LKELWFG+ PS +P  L+ AIS  AP F    QHD+QE+L++++DGLHEDLNRV+ KP   + +    + DA VA EAW +   R+ S  V    GQFKST+VCP  C  VS  F+ FN + +ELP +  R ++V+ V
Sbjct:  254 CGSCQLIWYCGENCQRAHWK-YHKDVCRSTLSAEEKEEEILHGLQTERRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNRYKKDLNRDNPLGTGGNLAEEYDGLLKELWFGTVPSTSPANLKRAISRFAPQFSGFQQHDAQELLAYIIDGLHEDLNRVKHKPYTEVKESDGSQDDATVAKEAWGRHLLRNDSIFVDHVQGQFKSTVVCPL-CNKVSITFDPFNCIQLELPQQQNRQIEVIFV 497          
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Match: A0A484EB89_BRELC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EB89_BRELC)

HSP 1 Score: 235 bits (599), Expect = 4.840e-68
Identity = 125/246 (50.81%), Postives = 161/246 (65.45%), Query Frame = 1
Query:   37 CSRCSRVRYCSRACQELHYRRYHKAVC-AATCAARKAGLSLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHLNRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAHVQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAKFTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVELPSRGLRPLDVLVV 771
            C  C  V YC  +CQ  H++ YHK +C +A  A  K G  L  L   RRGK GL NLGNTCF++SA+QCLSHV  LTRY LS++++  LNR NPLGTGG L + YDA+LKELWFGS  + +P  L+ AIS  AP F    QHD+QE+ +F++DGLHEDLNRV+ KP   + +    + DAAVA EAW +   R+ S  V    GQFKST+VCP  C  VS  F+ FN + +ELP +  R ++V+ V
Sbjct:  258 CGSCRLVWYCGASCQTSHWK-YHKVICCSANSAHEKEGGILRDLQAERRGKMGLRNLGNTCFMNSALQCLSHVDLLTRYFLSNKYKKDLNRDNPLGTGGNLAEEYDALLKELWFGSGSNTSPANLKGAISRFAPQFSGFQQHDAQELFAFIIDGLHEDLNRVKHKPYTEVKESDGSQDDAAVAEEAWKRHLLRNDSIFVDHIQGQFKSTVVCPV-CDKVSITFDPFNCIQLELPRQLYREIEVIFV 501          
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Match: A0A6A3P1V5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P1V5_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.060e-67
Identity = 124/246 (50.41%), Postives = 161/246 (65.45%), Query Frame = 1
Query:   37 CSRCSRVRYCSRACQELHYRRYHKAVCAATCAAR-KAGLSLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHLNRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAHVQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAKFTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVELPSRGLRPLDVLVV 771
            C  C  + YC   CQ  H++ YHK VC +T +A  K    L  L   RRGK GL NLGNTCF++SA+QCLSHV  LTRY LS++++  LNR NPLGTGG L + YD +LKELWFG+ PS +P  L+ AIS  AP F    QHD+QE+L++++DGLHEDLNRV+ KP   + +    + DAAVA EAW +   R+ S  V    GQFKST+VCP  C  VS  F+ FN + +ELP +  R ++V+ V
Sbjct:  272 CGSCQLIWYCGANCQMSHWK-YHKGVCRSTLSAEEKEDEILQGLKAERRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNQYKKDLNRDNPLGTGGNLAEEYDGLLKELWFGTVPSTSPGNLKRAISRFAPQFSGFQQHDAQELLAYIIDGLHEDLNRVKHKPYTEVKESDGSQDDAAVAKEAWERHLLRNNSIFVDHVQGQFKSTVVCPV-CNKVSITFDPFNCIQLELPQQQNRQIEVIFV 515          
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Match: A0A0W8D2F7_PHYNI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D2F7_PHYNI)

HSP 1 Score: 235 bits (599), Expect = 4.340e-67
Identity = 125/246 (50.81%), Postives = 161/246 (65.45%), Query Frame = 1
Query:   37 CSRCSRVRYCSRACQELHYRRYHKAVCAATCAAR-KAGLSLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHLNRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAHVQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAKFTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVELPSRGLRPLDVLVV 771
            C  C  + YC   CQ  H++ YHK VC +T  A  K    L  L   RRGK GL NLGNTCF++SA+QCLSHV  LTRY LS++++  LNR NPLGTGG L + YDA+LKELWFG+ PS +P  L+ AIS  AP F    QHD+QE+L++++DGLHEDLNRV+ KP   + +    + DAAVA EAW +   R+ S  V    GQFKST+VCP  C  VS  F+ FN + +ELP +  R ++V+ V
Sbjct:  268 CGNCQLIWYCGANCQMSHWK-YHKGVCRSTLTAEEKEDDILQGLQAERRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNQYKKDLNRDNPLGTGGNLAEEYDALLKELWFGTVPSTSPANLKRAISRFAPQFSGFQQHDAQELLAYIIDGLHEDLNRVKHKPYTEVKESDGSQDDAAVAKEAWQRHLLRNDSIFVDHVQGQFKSTVVCPI-CNKVSITFDPFNCIQLELPQQLNRQIEVIFV 511          
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Match: A0A5D6XTB0_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTB0_9STRA)

HSP 1 Score: 231 bits (590), Expect = 6.200e-67
Identity = 126/245 (51.43%), Postives = 158/245 (64.49%), Query Frame = 1
Query:   37 CSRCSRVRYCSRACQELHYRRYHKAVCAATCAARKAGLSLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHLNRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAHVQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAKFTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVELPSRGLRPLDVLVV 771
            C  C  + YC  ACQ  H++ YHKA C A  A+    ++       RRGK GL NLGNTCF++SA+QCLSHV  LT Y LS+R++  LNR NPLGTGG L   YDA LKELWFG+SPS+ P  L+ AI   AP F    QHDSQE+L++LLDGLHEDLNRV++KP   + +      DA VA EAW +   R+ S  V    GQFKST+VCP  C  VS  F+ FN V +ELP +  R ++V++V
Sbjct:  271 CGNCQLIWYCGAACQTSHWK-YHKAACKAATASA-GDMAQDGAAEERRGKMGLRNLGNTCFMNSALQCLSHVELLTSYFLSNRYQKDLNRDNPLGTGGNLALEYDAHLKELWFGTSPSMTPAGLKRAIGRFAPQFSGFQQHDSQELLAYLLDGLHEDLNRVKQKPYTEVSESDGKTDDAVVAKEAWDRHLLRNDSIFVDHIQGQFKSTVVCPI-CAKVSITFDPFNCVQLELPMQQNRKMEVILV 512          
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Match: K3WVW9_GLOUD (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVW9_GLOUD)

HSP 1 Score: 231 bits (589), Expect = 1.480e-66
Identity = 125/246 (50.81%), Postives = 160/246 (65.04%), Query Frame = 1
Query:   37 CSRCSRVRYCSRACQELHYRRYHKAVC-AATCAARKAGLSLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHLNRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAHVQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAKFTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVELPSRGLRPLDVLVV 771
            C  C  + YC  ACQ  H++ YHK VC +AT +  K  +        RRGK GL NLGNTCF++SA+QCLSHV  LT Y LS++++  LN+ NPLGTGG L   YDA+LKELWFG+SPS AP  L+ AI   AP F    QHDSQE+L++LLDGLHEDLNRV++KP   + +      DA VA EAW +   R+ S  V    GQFKST+VCP  C  VS  F+ FN + +ELP +  R ++V++V
Sbjct:  275 CGSCQLIWYCGAACQTSHWK-YHKTVCRSATSSEDKEAMIQEGSAEERRGKMGLRNLGNTCFMNSALQCLSHVEILTSYFLSNQYQKDLNKDNPLGTGGNLATEYDALLKELWFGTSPSFAPAGLKRAIGRFAPQFSGFQQHDSQELLAYLLDGLHEDLNRVKQKPYTEVKESDGKVEDAVVAKEAWERHLLRNNSIFVDHVQGQFKSTVVCPI-CAKVSITFDPFNCIQLELPMQQNRKIEVVLV 518          
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Match: A0A662XHX6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHX6_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.710e-66
Identity = 121/246 (49.19%), Postives = 160/246 (65.04%), Query Frame = 1
Query:   37 CSRCSRVRYCSRACQELHYRRYHKAVCAATCAAR-KAGLSLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHLNRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAHVQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAKFTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVELPSRGLRPLDVLVV 771
            C  C  + YC  ACQ  H++ YHK VC +  +A  K    +  L   RRGK GL NLGNTCF++SA+QCLSH+  LT Y LS+ ++  LNR NPLGTGG L + YDA+LKELWFG++PS +P  L+ AIS   P F    QHD+QE+L++++DGLHEDLNRV+ KP   + +    + DA VA EAW +   R+ S  V    GQFKST+VCP  CG VS  F+ FN + +ELP +  R ++V+ V
Sbjct:  266 CGNCQLIWYCGTACQMSHWK-YHKLVCRSKLSAEEKEEEIMQGLAGERRGKMGLRNLGNTCFMNSAIQCLSHLELLTHYFLSNDYKKDLNRDNPLGTGGNLAEEYDALLKELWFGTTPSTSPASLKRAISRFQPQFSGFQQHDAQELLAYIIDGLHEDLNRVKHKPYTEVKESDGSQEDAVVAREAWERHLLRNDSIFVDHVQGQFKSTVVCPV-CGKVSITFDPFNCIQLELPQQLNRQMEVIFV 509          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig652.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSH2_ECTSI5.190e-8461.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L229_9PHAE4.810e-8360.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D0N8U1_PHYIT3.680e-6849.42Ubiquitin carboxyl-terminal hydrolase n=26 Tax=Phy... [more]
H3GWC2_PHYRM4.840e-6850.41Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phyt... [more]
A0A484EB89_BRELC4.840e-6850.81Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Brem... [more]
A0A6A3P1V5_9STRA1.060e-6750.41Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Phyt... [more]
A0A0W8D2F7_PHYNI4.340e-6750.81Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Phyt... [more]
A0A5D6XTB0_9STRA6.200e-6751.43Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pyth... [more]
K3WVW9_GLOUD1.480e-6650.81Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Glob... [more]
A0A662XHX6_9STRA1.710e-6649.19Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Noth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig652contigP-wetherbeei_contig652:7762..9190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSH2
PFAMsDUSP,UCH,zf-MYND
Model size771
Max annot lvl2759|Eukaryota
KEGG koko:K11835,ko:K11837,ko:K11847
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.5e-85
EggNOG OGsCOG5560@1|root,KOG1870@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin carboxyl-terminal hydrolase USP
Ec32 orthologEc-11_003720.1
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size771
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.760848-CDS-P-wetherbeei_contig652:7761..81691683186919.760848-CDS-P-wetherbeei_contig652:7761..8169Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig652 7762..8169 -
1683186919.7710876-CDS-P-wetherbeei_contig652:8500..88091683186919.7710876-CDS-P-wetherbeei_contig652:8500..8809Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig652 8501..8809 -
1683186919.7799416-CDS-P-wetherbeei_contig652:9136..91901683186919.7799416-CDS-P-wetherbeei_contig652:9136..9190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig652 9137..9190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig652.6.1prot_P-wetherbeei_contig652.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig652 7762..9190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig652.6.1

>prot_P-wetherbeei_contig652.6.1 ID=prot_P-wetherbeei_contig652.6.1|Name=mRNA_P-wetherbeei_contig652.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
PCATCGDPGRYGCSRCSRVRYCSRACQELHYRRYHKAVCAATCAARKAGL
SLPPLPPARRGKAGLVNLGNTCFLSSAVQCLSHVVPLTRYLLSDRFRAHL
NRANPLGTGGRLTDAYDAVLKELWFGSSPSVAPTELRHAISAHAPHFLAH
VQHDSQEVLSFLLDGLHEDLNRVRKKPAVVMPDGSCGRPDAAVAAEAWAK
FTSRDWSALVPVFYGQFKSTLVCPGGCGNVSRKFEEFNAVTVELPSRGLR
PLDVLVV
back to top

mRNA from alignment at P-wetherbeei_contig652:7762..9190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig652.6.1 ID=mRNA_P-wetherbeei_contig652.6.1|Name=mRNA_P-wetherbeei_contig652.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1429bp|location=Sequence derived from alignment at P-wetherbeei_contig652:7762..9190- (Phaeothamnion wetherbeei SAG_119_79)
CCGTGCGCGACGTGCGGGGACCCCGGGCGATACGGATGCAGCCGCTGCTC GAGGGTGGGTTCTAGTTTTCTGCTTGGTTCCGTGCGGTGGGGCTGGGTTG GGGTTGACTTAATCGGGTAAACTTGTTATGTGGCGTTGTTGCCGCGCTTT TCCTGGCCGTTTCTCTTCGTTTCCCTTCTCGGTTGTGGACACCTTGTTGT CTGTTTCTGTCGCCGGAATCATTTGGCGGCGACATGCTTCAAACAGATTT TGTTTCAGAGGTTTTAAAAGAGTCGCTGGCTCACGGGGTTAGTTTCCTTG TAGCTGAAACGTCAGAACGCTTCGTCTTCGTCCTGCTCTTATCGAGATAC CGGAACTTGCGGCCCCACCCAATCAAACCAGGTGAGATACTGCTCGCGGG CGTGCCAAGAGCTGCACTACCGGCGCTACCACAAGGCCGTGTGCGCCGCA ACTTGCGCCGCGCGCAAGGCGGGGCTGTCGCTACCCCCCCTCCCGCCGGC GCGGCGTGGCAAGGCCGGGCTGGTGAACCTCGGCAACACGTGCTTCCTGA GCTCTGCAGTGCAGTGCCTCAGCCACGTGGTGCCGCTAACGCGCTACCTG CTGTCGGACCGCTTCCGGGCGCACCTCAACCGGGCCAATCCGCTCGGCAC CGGTGGCCGCCTGACGGATGCCTACGACGCCGTCCTCAAGGTCAGTGCTC ACTGTCTTATAATGATTTGAGTCTTGGTTTGGTCAGTCGCATCATCGATC GGCACAGTGAAAGAGACAGGTATTTATCTCCAGTTGTGCGGCAGCGTGAG CGTCAGAAGACGGCGCTCTCGTTCTCTCTTTTGCTTTTGTGTCTTGGGTT CTGGGTTTTTTCAGAAACGGCCCGTTAATCAACCTTCCCTTTCGCCCTAC GACTTCTTCCTCCTCGTTCTACCTGTGGCCGGCTTCCGACGCTTCGGTGC GTGGCCGCATCCTTAACGGATCTCGTCGGTTGTGTTGTTGATTTTGCAAC ACATTGGGCCGATCGCCGCAGGAGCTGTGGTTTGGGAGCAGCCCGTCGGT GGCCCCGACGGAGCTGCGGCATGCCATTTCCGCCCACGCACCGCACTTCC TGGCGCATGTGCAGCACGACTCACAGGAGGTACTCTCCTTCCTGCTGGAC GGACTCCACGAGGACCTCAACCGGGTCCGAAAGAAGCCTGCTGTGGTCAT GCCCGACGGCTCGTGCGGCCGTCCCGACGCTGCCGTGGCCGCCGAGGCGT GGGCCAAATTCACCTCGCGGGACTGGTCGGCACTCGTGCCGGTCTTCTAC GGCCAGTTCAAGTCGACGCTGGTGTGCCCCGGTGGTTGCGGCAACGTCTC CCGCAAATTCGAGGAGTTCAACGCCGTGACGGTGGAGCTGCCATCGCGCG GACTGCGGCCGCTGGACGTACTTGTCGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig652:7762..9190-

>mRNA_P-wetherbeei_contig652.6.1 ID=mRNA_P-wetherbeei_contig652.6.1|Name=mRNA_P-wetherbeei_contig652.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig652:7762..9190- (Phaeothamnion wetherbeei SAG_119_79)
CCGTGCGCGACGTGCGGGGACCCCGGGCGATACGGATGCAGCCGCTGCTC
GAGGGTGAGATACTGCTCGCGGGCGTGCCAAGAGCTGCACTACCGGCGCT
ACCACAAGGCCGTGTGCGCCGCAACTTGCGCCGCGCGCAAGGCGGGGCTG
TCGCTACCCCCCCTCCCGCCGGCGCGGCGTGGCAAGGCCGGGCTGGTGAA
CCTCGGCAACACGTGCTTCCTGAGCTCTGCAGTGCAGTGCCTCAGCCACG
TGGTGCCGCTAACGCGCTACCTGCTGTCGGACCGCTTCCGGGCGCACCTC
AACCGGGCCAATCCGCTCGGCACCGGTGGCCGCCTGACGGATGCCTACGA
CGCCGTCCTCAAGGAGCTGTGGTTTGGGAGCAGCCCGTCGGTGGCCCCGA
CGGAGCTGCGGCATGCCATTTCCGCCCACGCACCGCACTTCCTGGCGCAT
GTGCAGCACGACTCACAGGAGGTACTCTCCTTCCTGCTGGACGGACTCCA
CGAGGACCTCAACCGGGTCCGAAAGAAGCCTGCTGTGGTCATGCCCGACG
GCTCGTGCGGCCGTCCCGACGCTGCCGTGGCCGCCGAGGCGTGGGCCAAA
TTCACCTCGCGGGACTGGTCGGCACTCGTGCCGGTCTTCTACGGCCAGTT
CAAGTCGACGCTGGTGTGCCCCGGTGGTTGCGGCAACGTCTCCCGCAAAT
TCGAGGAGTTCAACGCCGTGACGGTGGAGCTGCCATCGCGCGGACTGCGG
CCGCTGGACGTACTTGTCGTG
back to top