mRNA_P-wetherbeei_contig6518.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6518.2.2 vs. uniprot
Match: A0A6H5J7I8_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I8_9PHAE) HSP 1 Score: 206 bits (524), Expect = 9.620e-53 Identity = 180/602 (29.90%), Postives = 252/602 (41.86%), Query Frame = 2
Query: 80 FVVPSLLAEGEIKWAFCSALTSYSGRVWRFQSLHPPGLMSALISCLYGIGSNHVAKRHELAMNVLLPEQPVPDAEIAAGTSPRRRSAGIYLRLRDCSRDGINDIGGXXXXXXXXXXXXXXXXXGFGGRESRVDRDSPQLRLELWGRAHVGSEDGLMEALERIFALVDRTLQRFPGLLLDKLVACPMCLDKQR-DVRDWATFPLEVVETDRECYPSPFMLCTSECDLDSRAQRLLYAGRIAAVA-AAPGDAAALATRRLRLVEDCP----------------------------------QLFPAVCCVAVYDCRSRRMALQGTAAVVDGDRGRLLSMAHLFLRF-----------GRDGAVVPL---------FKPEDCVVLVGTFVDADTCEWRFAADVSWDPSA--AVVAYDAPWMPDFPVLLQLRKLFEPVDWRTVACVPFKNV-----AKVGFGPL--------------GLPSLKLGSSEGVG----------ILAP-------------------------VTLVAWPGKHLG---SSIFAAHGTVARRFEQHHILQLDLLNERGASGGPVLDQSGSVIGLLSQGQGRIGYVYGAS 1540
+ +P LL I+W + GR W FQ PP LMSALIS YG+G A ++ + +P + GT+ RR A ++L+L R G ++ + + SP RLEL +A +GLM LE + VD+TL FPGLL ++ V CP C++K+ D W PLE+VE R C P +C +C L +RL++ G + A G A + RR V P LFPAVC +A+YDC ++R TA +V ++G LLS AH FL+F G +G P E+C+VLVGTF T W F A+ + + YD W D PVLL++++ F P+ + V + FK+V A+ G + GL +LKLG S V + P +TLVA+P +H SSI HG VAR ++++ L N GASGGPV+D+ G V+G+LSQG YV G S
Sbjct: 1669 YFIPCLLPTRPIEWTASWVANVHCGRRWHFQRFVPPSLMSALISRFYGMGKRGSASLSRRSIYIKVPIRGNSGGN--GGTTRRRGEAEVFLKLH---RGGQHN--------------------------ALLSMQSP--RLELLAQAESHRREGLMRGLEGLVKEVDKTLDEFPGLLFERRVPCPACMEKKPGDPAAWGGLPLEMVEDKRSC-PGDLPMCKYKCRLQDLQKRLMFVGELHPEGDEADGGALSYHHRRHGSVWVSPLPELGVPGVVDGAGARIGDRDGGPYRGFGVPRVETLFPAVCPIAIYDCVTQRTRAHATAFIVKSEKGYLLSAAHTFLKFKFEENDGGGEDGDEGRNAPRRGRWCYHDGVTHENCIVLVGTFQSPSTTRWEFVAEALQHSELVRSKLYYDIGWNKDHPVLLRIKRRFSPIPTKVVDHLVFKDVTRDWRARAPGGDVVNSTQDQRLRDHSWGLTALKLGDSRQVHNRPKGDVEYLTIYPEALLEVLKEEDNDVCMTMTVFPQELLTLVAFP-EHTAPYFSSISVTHGPVARNMVGQDVIEVLLSNHPGASGGPVVDKRGEVVGILSQGNQFGAYVMGIS 2235
BLAST of mRNA_P-wetherbeei_contig6518.2.2 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI) HSP 1 Score: 204 bits (519), Expect = 4.260e-52 Identity = 182/611 (29.79%), Postives = 255/611 (41.73%), Query Frame = 2
Query: 80 FVVPSLLAEGEIKWAFCSALTSYSGRVWRFQSLHPPGLMSALISCLYGIGSNHVAKRHELAMNVLLPEQPVPDAEIAAGTSPRRRSAGIYLRLRDCSRDGINDIGGXXXXXXXXXXXXXXXXXGFGGRESRVDRDSPQLRLELWGRAHVGSEDGLMEALERIFALVDRTLQRFPGLLLDKLVACPMCLDKQR-DVRDWATFPLEVVETDRECYPSPFMLCTSECDLDSRAQRLLYAGRIAAVAAAPGDAAALATRRLRL------------VEDCPQL--------------------------------FPAVCCVAVYDCRSRRMALQGTAAVVDGDRGRLLSMAHLFLRF-----------GRDGAVVPL---------FKPEDCVVLVGTFVDADTCEWRFAADVSWDPSA--AVVAYDAPWMPDFPVLLQLRKLFEPVDWRTVACVPFKNV-----AKVGFGPL--------------GLPSLKLGSSEGVG----------ILAP-------------------------VTLVAWPGKHLG---SSIFAAHGTVARRFEQHHILQLDLLNERGASGGPVLDQSGSVIGLLSQGQGRIGYVYGAS 1540
+ +P LL I+W + GR WRFQ PP LMSALIS YG+G A ++ + +P +GT+ RR A ++L+L R G ++ + + SP RLEL +A + LM LE + VDRTL FPGLL ++ V CP C++K+ D W PLE+VE R C P +C +C L +RL++ G + GD A + R L V P+L +PAVC +A+YDC ++RM TA +V ++G LLS AH FL+F G +G P E+C+VLVGTF T +W F A+V + + YD W D PVLL+++ F P+ + V + FK V A+ G + GL +LKLG S V + P +TLVA+P +H+ SSI HG VAR ++++ L N GASGGPV+D+ G V+G+LSQG YV G S
Sbjct: 1639 YFIPCLLPTRPIEWTASWVANVHCGRRWRFQRFVPPSLMSALISRFYGMGKRGSASLSRRSIYIKVPIGGNSGGN--SGTTRRRGEAEVFLKLH---RGGQHN--------------------------ASLSMQSP--RLELLAQAESHRREELMRRLEGLVKEVDRTLGEFPGLLFERRVPCPACMEKKPGDPAAWGGLPLEMVEDKRSC-PGDLPMCKYKCRLQDLQKRLMFVGELHP----EGDEADGSIRNGTLSHHHHRRHGSVWVSPLPELGVPGVFDGLGAGIGERDGGPYRGFGVPRVESLYPAVCPIAIYDCVTQRMRAHATAFIVKSEKGYLLSAAHTFLKFKFEENDVGVEDGDEGRNAPRRGRWCYHNGVTHENCIVLVGTFQSPSTTQWEFVAEVLQHSELVRSKLYYDIGWNKDHPVLLRIKLRFSPIPTKVVDHLVFKEVTRDWRARAPGGDVVNSTQDQRLRHHSSGLTALKLGDSRKVHNRPKGDVEYLTIYPEALLEVLKEEDNDVCMTMTVFPQELLTLVAFP-EHIAPYFSSISVTHGPVARNMVGQDVIEVLLSNHPGASGGPVVDKRGEVVGILSQGNQFGAYVMGIS 2210 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6518.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6518.2.2 >prot_P-wetherbeei_contig6518.2.2 ID=prot_P-wetherbeei_contig6518.2.2|Name=mRNA_P-wetherbeei_contig6518.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=515bp MSALISCLYGIGSNHVAKRHELAMNVLLPEQPVPDAEIAAGTSPRRRSAGback to top mRNA from alignment at P-wetherbeei_contig6518:410..3186+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6518.2.2 ID=mRNA_P-wetherbeei_contig6518.2.2|Name=mRNA_P-wetherbeei_contig6518.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2777bp|location=Sequence derived from alignment at P-wetherbeei_contig6518:410..3186+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6518:410..3186+ >mRNA_P-wetherbeei_contig6518.2.2 ID=mRNA_P-wetherbeei_contig6518.2.2|Name=mRNA_P-wetherbeei_contig6518.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1545bp|location=Sequence derived from alignment at P-wetherbeei_contig6518:410..3186+ (Phaeothamnion wetherbeei SAG_119_79)back to top |