mRNA_P-wetherbeei_contig6510.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6510.2.1
Unique NamemRNA_P-wetherbeei_contig6510.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6510.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6510contigP-wetherbeei_contig6510:853..3411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1698
Hectar predicted targeting categoryother localisation
Exons4
Cds size1695
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.0795298-CDS-P-wetherbeei_contig6510:853..19931683186919.0795298-CDS-P-wetherbeei_contig6510:853..1993Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6510 854..1993 -
1683186919.0895424-CDS-P-wetherbeei_contig6510:2175..24431683186919.0895424-CDS-P-wetherbeei_contig6510:2175..2443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6510 2176..2443 -
1683186919.1000504-CDS-P-wetherbeei_contig6510:2795..29141683186919.1000504-CDS-P-wetherbeei_contig6510:2795..2914Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6510 2796..2914 -
1683186919.1107013-CDS-P-wetherbeei_contig6510:3243..34111683186919.1107013-CDS-P-wetherbeei_contig6510:3243..3411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6510 3244..3411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6510.2.1prot_P-wetherbeei_contig6510.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6510 854..3411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6510.2.1

>prot_P-wetherbeei_contig6510.2.1 ID=prot_P-wetherbeei_contig6510.2.1|Name=mRNA_P-wetherbeei_contig6510.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=565bp
FVSFVVASRPPAALARRSAGEGGAIYVNNYGDLVLQEGSEIDNNEAATTG
GGVHLQVLSNLGCSDTSVTGNVAGENGGGVYAFERVSMEWNLCNVTSNLA
DLNGGGLFMTTNSNLTSKWSRIGDNFVRIGGAAAVVAGGSRMHSLGDEFV
AAAADGAVAGTGDATSSSEAALQVALQTGKDTSFLAYGTVFDGWSDSYAV
LYAGAAMVLDSCDFSKSGTGPYVVFSGPAKHKSPPVVVRNAVLSNATWAA
VEYAADATFSDNAYSSCSDADAHAVAAAIGNGSDGTLCSGGGCRDSAFGV
LCPCYVPALLLPANGATDDETAGETASVCLGGAVGGAALRMADSGIYIGL
DDPEIFANLTAALTSGTARRLTGAAAAAVNSAANSAAVAAVDAASPIQRR
RLVANAEFGADGVIFALSMSTAADQAGWTIVPSLGILLPGGFMQVRVSAP
SAGVADGEADVAVTAVFATDAETAEEAATASFTYYHCDKNEWYEAAAAGT
AAVGTCVSCADSVGIDCSAPGNSLEWLALDAGYWRATTDTVDAQLCFSKK
ACKGGPPTPRIDESA
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mRNA from alignment at P-wetherbeei_contig6510:853..3411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6510.2.1 ID=mRNA_P-wetherbeei_contig6510.2.1|Name=mRNA_P-wetherbeei_contig6510.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2559bp|location=Sequence derived from alignment at P-wetherbeei_contig6510:853..3411- (Phaeothamnion wetherbeei SAG_119_79)
TTTGTCTCTTTCGTCGTCGCCTCCCGCCCGCCCGCCGCCCTCGCACGCAG
GTCGGCGGGCGAGGGCGGCGCCATCTACGTCAACAACTACGGCGATCTGG
TCCTCCAAGAGGGCTCGGAGATCGACAACAACGAGGCGGCCACCACAGGC
GGCGGCGTACACCTTCAGGTACCGCCGTCCATGCACGAGGGGGAGCATTG
ATGTGTAGCTGCCTGTGTTGGTGTAATAAGAGGTATCGCGAGGGACGGTT
CGGGCCGGGCGGCGGGCAGCTGGCGCTTATGCCGGTTCTCTCTGGTAGAA
GTGGGGAGTTTGAATGATGAGATCCGCGGATTGTACGGCGAGAGTGGAAG
TTATGGGGAGGGCACCGATTCGGAACACGCTTGTTTTACACCCGGCGTTT
TATGCCTTGCTCCAGTTCTAGGTTTGACGGGGCCGAAGCTTTGTTGCGTA
ACACTTCTGTAGCCGCTCTCTTCAAAACCGGCCCCATACTGCCCCAGGTC
CTCTCCAACCTGGGCTGCAGCGACACCTCCGTCACCGGGAATGTCGCCGG
GGAGAACGGTGGCGGAGTGTATGCGTTCGAACGTGTATCGATGGAGTGGA
ATCTCTGCAACGTGACGTGAGAGCATTTTCTGGATTCTCACTTTACCGGG
TGGTATTTTCCTTCTGCACTTTATTGGTCATTGGTAGAGTTTGCTGTAGG
TACCACAGCCTTCCATGCTGCCTTCCCAAGCACGTTCTCGCTGCCGAAAT
GAACGCCCTTCTTCATGTTGAGGATTCTTCTTAGTCGAGATTCCTCTCCT
GGTATCAGATTCTATTTTCACTGGTATCAGGAGCTGGCAAACTGGTACAT
TTGTTAATGAAAACGGAGCTATCTATGCCGCATTCCTAAGACGCGCGTTA
CGACCGTCGAACGGAATGCCCTTCTTCAATCTTTAAACTCTTTGCCGTTT
TCTGCTCCATGCGCGCAGGTCCAACTTAGCAGACCTAAACGGCGGCGGCC
TCTTCATGACAACCAACAGCAATCTCACGTCCAAATGGTCGCGGATCGGT
GACAACTTCGTGCGCATTGGCGGAGCGGCGGCGGTTGTTGCCGGCGGCAG
CCGTATGCACAGCCTCGGAGACGAGTTTGTGGCCGCCGCCGCCGACGGCG
CGGTTGCGGGAACCGGCGATGCCACTTCTTCCAGCGAAGCCGCGCTTCAG
GTGGCGCTGCAGACGGGAAAGGACACATCCTTCTTGGTGCGTTTTGTTGC
AGGGGACATGTACCTTTCTTTTCTTTCTCTCTCGGCTCGGTTGGTCTGCA
GGTCAGAGAAACGATGAGAAAATAGTTCTAGACTCCACTGCGCGGTTGTA
ACTCGTCTTTCCGTTCTGTTGAAGCGCATGCCCTCAAAAAAACACAATAA
TCTGCGCTGTACGATCAGGCGTATGGAACTGTGTTCGACGGCTGGAGCGA
TTCGTACGCGGTTCTCTACGCCGGCGCCGCCATGGTGCTCGACTCCTGTG
ACTTCTCTAAGTCCGGTACGGGCCCGTACGTCGTCTTTTCGGGTCCGGCG
AAGCACAAGTCCCCGCCCGTCGTCGTCCGCAACGCTGTGCTCAGCAACGC
AACCTGGGCGGCTGTCGAATACGCCGCCGATGCCACCTTCTCCGACAATG
CCTACAGCAGTTGTAGTGACGCCGATGCCCATGCCGTCGCTGCGGCGATC
GGCAACGGCAGCGACGGGACGCTGTGCAGCGGCGGTGGTTGCCGCGACTC
GGCGTTCGGCGTCCTCTGCCCGTGCTATGTGCCGGCGTTGCTTCTGCCCG
CTAACGGCGCAACCGATGACGAAACGGCCGGCGAGACGGCTTCTGTCTGC
CTCGGCGGCGCCGTCGGCGGGGCGGCCCTGAGGATGGCGGACAGTGGTAT
TTACATCGGTCTCGATGACCCTGAGATCTTCGCCAACCTCACTGCCGCTT
TGACCTCCGGCACCGCCCGCCGCCTCACTGGCGCTGCCGCAGCTGCTGTC
AACTCCGCCGCTAACTCCGCCGCGGTCGCCGCCGTCGATGCTGCAAGTCC
GATCCAGCGTCGCCGGCTCGTGGCTAACGCCGAATTCGGCGCTGACGGCG
TCATCTTCGCGCTCTCGATGTCGACGGCGGCGGACCAGGCCGGGTGGACC
ATTGTCCCGTCGCTGGGCATCCTCTTGCCCGGCGGCTTCATGCAGGTGCG
CGTTTCGGCGCCGTCCGCCGGCGTCGCCGACGGCGAGGCGGACGTAGCAG
TCACCGCTGTCTTTGCCACAGACGCCGAGACCGCCGAAGAGGCCGCGACG
GCCTCATTCACATACTATCACTGCGACAAAAACGAGTGGTACGAGGCAGC
CGCCGCCGGAACTGCAGCCGTGGGGACGTGCGTAAGCTGCGCCGACTCGG
TCGGCATCGACTGCTCCGCTCCGGGCAACTCGCTGGAATGGTTGGCTCTG
GACGCGGGGTACTGGCGCGCGACGACCGACACGGTGGACGCGCAGCTCTG
CTTCAGCAAGAAGGCCTGCAAGGGTGGTCCACCCACGCCGCGCATCGATG
AATCTGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6510:853..3411-

>mRNA_P-wetherbeei_contig6510.2.1 ID=mRNA_P-wetherbeei_contig6510.2.1|Name=mRNA_P-wetherbeei_contig6510.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1695bp|location=Sequence derived from alignment at P-wetherbeei_contig6510:853..3411- (Phaeothamnion wetherbeei SAG_119_79)
TTTGTCTCTTTCGTCGTCGCCTCCCGCCCGCCCGCCGCCCTCGCACGCAG
GTCGGCGGGCGAGGGCGGCGCCATCTACGTCAACAACTACGGCGATCTGG
TCCTCCAAGAGGGCTCGGAGATCGACAACAACGAGGCGGCCACCACAGGC
GGCGGCGTACACCTTCAGGTCCTCTCCAACCTGGGCTGCAGCGACACCTC
CGTCACCGGGAATGTCGCCGGGGAGAACGGTGGCGGAGTGTATGCGTTCG
AACGTGTATCGATGGAGTGGAATCTCTGCAACGTGACGTCCAACTTAGCA
GACCTAAACGGCGGCGGCCTCTTCATGACAACCAACAGCAATCTCACGTC
CAAATGGTCGCGGATCGGTGACAACTTCGTGCGCATTGGCGGAGCGGCGG
CGGTTGTTGCCGGCGGCAGCCGTATGCACAGCCTCGGAGACGAGTTTGTG
GCCGCCGCCGCCGACGGCGCGGTTGCGGGAACCGGCGATGCCACTTCTTC
CAGCGAAGCCGCGCTTCAGGTGGCGCTGCAGACGGGAAAGGACACATCCT
TCTTGGCGTATGGAACTGTGTTCGACGGCTGGAGCGATTCGTACGCGGTT
CTCTACGCCGGCGCCGCCATGGTGCTCGACTCCTGTGACTTCTCTAAGTC
CGGTACGGGCCCGTACGTCGTCTTTTCGGGTCCGGCGAAGCACAAGTCCC
CGCCCGTCGTCGTCCGCAACGCTGTGCTCAGCAACGCAACCTGGGCGGCT
GTCGAATACGCCGCCGATGCCACCTTCTCCGACAATGCCTACAGCAGTTG
TAGTGACGCCGATGCCCATGCCGTCGCTGCGGCGATCGGCAACGGCAGCG
ACGGGACGCTGTGCAGCGGCGGTGGTTGCCGCGACTCGGCGTTCGGCGTC
CTCTGCCCGTGCTATGTGCCGGCGTTGCTTCTGCCCGCTAACGGCGCAAC
CGATGACGAAACGGCCGGCGAGACGGCTTCTGTCTGCCTCGGCGGCGCCG
TCGGCGGGGCGGCCCTGAGGATGGCGGACAGTGGTATTTACATCGGTCTC
GATGACCCTGAGATCTTCGCCAACCTCACTGCCGCTTTGACCTCCGGCAC
CGCCCGCCGCCTCACTGGCGCTGCCGCAGCTGCTGTCAACTCCGCCGCTA
ACTCCGCCGCGGTCGCCGCCGTCGATGCTGCAAGTCCGATCCAGCGTCGC
CGGCTCGTGGCTAACGCCGAATTCGGCGCTGACGGCGTCATCTTCGCGCT
CTCGATGTCGACGGCGGCGGACCAGGCCGGGTGGACCATTGTCCCGTCGC
TGGGCATCCTCTTGCCCGGCGGCTTCATGCAGGTGCGCGTTTCGGCGCCG
TCCGCCGGCGTCGCCGACGGCGAGGCGGACGTAGCAGTCACCGCTGTCTT
TGCCACAGACGCCGAGACCGCCGAAGAGGCCGCGACGGCCTCATTCACAT
ACTATCACTGCGACAAAAACGAGTGGTACGAGGCAGCCGCCGCCGGAACT
GCAGCCGTGGGGACGTGCGTAAGCTGCGCCGACTCGGTCGGCATCGACTG
CTCCGCTCCGGGCAACTCGCTGGAATGGTTGGCTCTGGACGCGGGGTACT
GGCGCGCGACGACCGACACGGTGGACGCGCAGCTCTGCTTCAGCAAGAAG
GCCTGCAAGGGTGGTCCACCCACGCCGCGCATCGATGAATCTGCC
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