mRNA_P-wetherbeei_contig6507.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6507.1.1
Unique NamemRNA_P-wetherbeei_contig6507.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Match: A0A835Z600_9STRA (Heme oxygenase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z600_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.220e-20
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 LKFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSLLKAIT 165
            L FY+W  DVR LLDAVR+ IDAMA  WSREEKDECL ET  TF+YGGSLL +IT
Sbjct:  161 LAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSIT 215          
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Match: A0A1D6QUW1_MAIZE (S-adenosyl-L-methionine-dependent methyltransferase superfamily protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6QUW1_MAIZE)

HSP 1 Score: 73.9 bits (180), Expect = 6.060e-16
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 LKFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSLLKAI 162
            L+FYKWEG+V QLL  VR K++ +A++WSREEKD CL ET  +F Y G LL+ I
Sbjct:   35 LEFYKWEGNVSQLLQNVRNKLNQVASSWSREEKDHCLEETEKSFSYSGGLLRHI 88          
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Match: A0A1D6QUW0_MAIZE (S-adenosyl-L-methionine-dependent methyltransferase superfamily protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6QUW0_MAIZE)

HSP 1 Score: 73.9 bits (180), Expect = 1.480e-15
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 LKFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSLLKAI 162
            L+FYKWEG+V QLL  VR K++ +A++WSREEKD CL ET  +F Y G LL+ I
Sbjct:   70 LEFYKWEGNVSQLLQNVRNKLNQVASSWSREEKDHCLEETEKSFSYSGGLLRHI 123          
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Match: A0A0D2MSL3_9CHLO (Heme oxygenase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MSL3_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 2.560e-15
Identity = 32/54 (59.26%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    1 LKFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSLLKAI 162
            L+FYK++GDV  LLDAVR KI+A++ +W+RE+KD CL+ET +TF+Y GSL+  I
Sbjct:  204 LEFYKYDGDVAPLLDAVRSKINALSESWTREQKDHCLQETADTFKYSGSLMPFI 257          
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Match: UPI001C4F3C47 (heme oxygenase 1, chloroplastic-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F3C47)

HSP 1 Score: 76.3 bits (186), Expect = 3.680e-15
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 LKFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSLLKAI 162
            L+FYKW+GD+ QLL  VR+K++ +A +WSREEKD CL ET  +F+Y G +L+ I
Sbjct:  239 LEFYKWDGDLSQLLQGVRVKLNKVAESWSREEKDHCLEETEKSFQYSGEILRLI 292          
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Match: A0A3L6FZ51_MAIZE (Uncharacterized protein n=5 Tax=Zea mays TaxID=4577 RepID=A0A3L6FZ51_MAIZE)

HSP 1 Score: 72.8 bits (177), Expect = 6.440e-15
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 LKFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSLLKAI 162
            L+FYKWEG++ QLL  VR K++ +A++WSREEKD CL ET  +F Y G LL+ I
Sbjct:   88 LEFYKWEGNLSQLLQNVRNKLNQVASSWSREEKDHCLEETEKSFSYSGGLLRHI 141          
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Match: M2X2Y4_GALSU (Heme oxygenase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X2Y4_GALSU)

HSP 1 Score: 75.5 bits (184), Expect = 7.620e-15
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    4 KFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSLLKAITK 168
            +FYKWEGDV+Q+LD VR+KID  A  W RE KDECL+ET  +F Y G++L  + K
Sbjct:  246 EFYKWEGDVKQILDQVRVKIDETARDWPREVKDECLKETGLSFSYSGTILGHLAK 300          
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Match: A0A804JDG1_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804JDG1_MUSAM)

HSP 1 Score: 75.1 bits (183), Expect = 8.420e-15
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 LKFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSLLKAI 162
            L+FYKW+GD+ Q+L  VR K++ +A++WSREEKD CL ET  +F+Y GS+L+ I
Sbjct:  224 LEFYKWDGDLSQMLQNVRDKLNRVASSWSREEKDHCLEETEKSFKYSGSILRLI 277          
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Match: A0A1D6MLC8_MAIZE (Heme oxygenase 1 chloroplastic n=2 Tax=PACMAD clade TaxID=147370 RepID=A0A1D6MLC8_MAIZE)

HSP 1 Score: 70.5 bits (171), Expect = 8.690e-15
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 LKFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSLLKAI 162
            L+FYKWEG++ QLL  VR K++ +A++WSREEKD CL E   +F Y G LL+ I
Sbjct:   16 LEFYKWEGNLSQLLQNVRNKLNQVASSWSREEKDHCLEEMEKSFSYSGGLLRHI 69          
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Match: A0A8J5XQF0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQF0_DIALT)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-14
Identity = 29/54 (53.70%), Postives = 44/54 (81.48%), Query Frame = 1
Query:    1 LKFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSLLKAI 162
            L+FYKW+GDV++LLDA R  IDAMAA+W+++E+D CL +T  +F+ GG L+ ++
Sbjct:  158 LEFYKWDGDVKELLDAARQHIDAMAASWTQDERDACLAQTAASFKGGGGLMASL 211          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6507.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z600_9STRA3.220e-2072.73Heme oxygenase-like protein n=1 Tax=Tribonema minu... [more]
A0A1D6QUW1_MAIZE6.060e-1659.26S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A1D6QUW0_MAIZE1.480e-1559.26S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A0D2MSL3_9CHLO2.560e-1559.26Heme oxygenase n=1 Tax=Monoraphidium neglectum Tax... [more]
UPI001C4F3C473.680e-1555.56heme oxygenase 1, chloroplastic-like n=1 Tax=Macad... [more]
A0A3L6FZ51_MAIZE6.440e-1557.41Uncharacterized protein n=5 Tax=Zea mays TaxID=457... [more]
M2X2Y4_GALSU7.620e-1558.18Heme oxygenase n=1 Tax=Galdieria sulphuraria TaxID... [more]
A0A804JDG1_MUSAM8.420e-1555.56(wild Malaysian banana) hypothetical protein n=1 T... [more]
A0A1D6MLC8_MAIZE8.690e-1555.56Heme oxygenase 1 chloroplastic n=2 Tax=PACMAD clad... [more]
A0A8J5XQF0_DIALT1.300e-1453.70Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6507contigP-wetherbeei_contig6507:3063..3233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog130081.XP_005707260.1
Preferred nameHY1
PFAMsHeme_oxygenase
Model size171
Max annot lvl2759|Eukaryota
KEGG rclassRC01270
KEGG koko:K21480
KEGG ReactionR11579
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.25e-15
EggNOG OGsCOG5398@1|root,KOG4480@2759|Eukaryota
EC1.14.15.20
Descriptionheme oxidation
Cds size171
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186918.7231152-CDS-P-wetherbeei_contig6507:3062..32331683186918.7231152-CDS-P-wetherbeei_contig6507:3062..3233Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6507 3063..3233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6507.1.1prot_P-wetherbeei_contig6507.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6507 3063..3233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6507.1.1

>prot_P-wetherbeei_contig6507.1.1 ID=prot_P-wetherbeei_contig6507.1.1|Name=mRNA_P-wetherbeei_contig6507.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
LKFYKWEGDVRQLLDAVRIKIDAMAAAWSREEKDECLRETTNTFRYGGSL
LKAITK*
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mRNA from alignment at P-wetherbeei_contig6507:3063..3233-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6507.1.1 ID=mRNA_P-wetherbeei_contig6507.1.1|Name=mRNA_P-wetherbeei_contig6507.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig6507:3063..3233- (Phaeothamnion wetherbeei SAG_119_79)
TTGAAGTTTTACAAGTGGGAGGGGGACGTCCGACAGCTGCTCGACGCCGT CCGGATCAAGATTGATGCCATGGCGGCGGCATGGAGCCGCGAGGAGAAGG ACGAGTGCCTGCGGGAGACGACCAACACTTTCCGGTATGGCGGCAGCCTC CTGAAAGCCATCACCAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6507:3063..3233-

>mRNA_P-wetherbeei_contig6507.1.1 ID=mRNA_P-wetherbeei_contig6507.1.1|Name=mRNA_P-wetherbeei_contig6507.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig6507:3063..3233- (Phaeothamnion wetherbeei SAG_119_79)
TTGAAGTTTTACAAGTGGGAGGGGGACGTCCGACAGCTGCTCGACGCCGT
CCGGATCAAGATTGATGCCATGGCGGCGGCATGGAGCCGCGAGGAGAAGG
ACGAGTGCCTGCGGGAGACGACCAACACTTTCCGGTATGGCGGCAGCCTC
CTGAAAGCCATCACCAAGTGA
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