mRNA_P-wetherbeei_contig6504.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6504.1.1
Unique NamemRNA_P-wetherbeei_contig6504.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Match: A0A3C0TYJ5_9PROT (Cytochrome B n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYJ5_9PROT)

HSP 1 Score: 213 bits (542), Expect = 1.470e-68
Identity = 98/120 (81.67%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MFRNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPDRAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRVMFADYGLWIILIKGLTHIPY 360
            MFRNLYDWTMRQAGG+HA PA+  VSFAESSFFPIPPDVMLIPM+LAR +RAWWIA  CT+SSVLGG+LGYAIGYFLFAT G+MIIDFY +QAGF+AY+  FA+YGLWIILIKGLT IPY
Sbjct:    1 MFRNLYDWTMRQAGGRHAEPALAAVSFAESSFFPIPPDVMLIPMVLARQERAWWIAATCTISSVLGGILGYAIGYFLFATFGKMIIDFYDMQAGFEAYQATFAEYGLWIILIKGLTPIPY 120          
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Match: A0A537N1D8_9PROT (DedA family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537N1D8_9PROT)

HSP 1 Score: 171 bits (433), Expect = 5.320e-52
Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    7 RNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPDRAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRVMFADYGLWIILIKGLTHIPY 360
            R LYDW MR A  +HA+PAMGVVSFAESSFFPIPPDVML+PM+LA  ++A+ IA VCT++SVLGG+LGYAIGY+ F T G  ++  YGLQAG D +R  FA++G+WIILIKGLT IPY
Sbjct:    2 RRLYDWVMRLARHRHAIPAMGVVSFAESSFFPIPPDVMLVPMVLANRNKAFTIAAVCTITSVLGGLLGYAIGYYFFETAGAWVVKTYGLQAGMDKFREGFAEWGIWIILIKGLTPIPY 119          
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Match: A0A5J6N3P2_9PROT (Cytochrome b561 n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6N3P2_9PROT)

HSP 1 Score: 169 bits (429), Expect = 2.220e-51
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = 1
Query:    1 MFRNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPDRAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRVMFADYGLWIILIKGLTHIPY 360
            M R LYDWTM  A   +A+ A+G VSFAESSFFPIPPD M+IPM+LARPDRAW IA V T++SVLGG+LGYAIGY+LF TLGQ +I  YG Q  F+A++  +A +GLWIILIKGLT IPY
Sbjct:    1 MLRRLYDWTMGLASRPNALTALGAVSFAESSFFPIPPDAMIIPMVLARPDRAWRIALVATVTSVLGGILGYAIGYYLFETLGQSLIKLYGYQDKFEAFKQAYAQWGLWIILIKGLTPIPY 120          
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Match: A0A5C6TUI8_9SPHN (DedA family protein n=1 Tax=Sphingosinicella ginsenosidimutans TaxID=1176539 RepID=A0A5C6TUI8_9SPHN)

HSP 1 Score: 169 bits (427), Expect = 4.340e-51
Identity = 75/120 (62.50%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 MFRNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPDRAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRVMFADYGLWIILIKGLTHIPY 360
            MFR +YDW +R AG +HA+  M  VSFAESSFFPIPPDVM++PMI+AR DRA+ IATVCT++SVLGG LGYAIGY+L+ +LGQ ++  YG++ G + +R  FA+YG+WI+L+KGLT IP+
Sbjct:    1 MFRRIYDWMLRMAGHRHALWIMAAVSFAESSFFPIPPDVMVVPMIVARRDRAFLIATVCTIASVLGGALGYAIGYYLYDSLGQWLVHLYGMEGGVETFRQKFAEYGMWIVLLKGLTPIPF 120          
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Match: A0A1F3A0B3_9PROT (Cytochrome B n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F3A0B3_9PROT)

HSP 1 Score: 169 bits (427), Expect = 4.470e-51
Identity = 80/120 (66.67%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 MFRNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPDRAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRVMFADYGLWIILIKGLTHIPY 360
            M R+LYDW +R AG   A+PA+GVVSF ESSFFPIPPDVMLIPM+LA  D+A+ IA VCT+ SVLGG+LGYAIGY+ F T+G  ++  YGLQAG DA+R  F ++G+WIILIKGLT IPY
Sbjct:    1 MIRSLYDWVIRLAGHPRAIPALGVVSFMESSFFPIPPDVMLIPMVLANRDKAFRIALVCTVCSVLGGLLGYAIGYYFFETIGAWVVKTYGLQAGLDAFRRGFQEHGIWIILIKGLTPIPY 120          
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Match: A0A521R5F3_9HYPH (DedA family protein n=2 Tax=Reyranella TaxID=445219 RepID=A0A521R5F3_9HYPH)

HSP 1 Score: 164 bits (416), Expect = 2.090e-49
Identity = 76/120 (63.33%), Postives = 95/120 (79.17%), Query Frame = 1
Query:    1 MFRNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPDRAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRVMFADYGLWIILIKGLTHIPY 360
            M R+LYDW +R A  +HA+PAMG VSF ESSFFPIPPDVML+PM+LA  ++A+ IA VCT+ SVLGG+LGYAIGY+ F T+G+ ++  YGLQ+G   +R  F +YG WIILIKGLT IPY
Sbjct:    1 MIRSLYDWVIRLARHRHAIPAMGAVSFMESSFFPIPPDVMLVPMVLANREKAFQIALVCTVCSVLGGLLGYAIGYYFFETIGEWVVRTYGLQSGLATFRAGFDEYGTWIILIKGLTPIPY 120          
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Match: A0A259MD90_9PROT (Cytochrome B n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MD90_9PROT)

HSP 1 Score: 163 bits (413), Expect = 5.970e-49
Identity = 79/120 (65.83%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    1 MFRNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPDRAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRVMFADYGLWIILIKGLTHIPY 360
            M R LYDW +R A  K+A+PAMGVVSF ESSFFPIPPDVML+PMILA  ++A+ IA VCT+ SVLGG+ GYAIGY+ F TLG  ++  YGLQAG   +R  F  YG WIILIKGLT IPY
Sbjct:    1 MIRRLYDWVIRLAQHKNAIPAMGVVSFMESSFFPIPPDVMLVPMILANREKAFRIALVCTVCSVLGGLFGYAIGYYFFETLGAWVVKTYGLQAGLATFRAGFEQYGTWIILIKGLTPIPY 120          
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Match: A0A5C8P809_9HYPH (DedA family protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A5C8P809_9HYPH)

HSP 1 Score: 163 bits (413), Expect = 5.970e-49
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    1 MFRNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPDRAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRVMFADYGLWIILIKGLTHIPY 360
            MFR LYDW +  AG +HAVPAMG VSF ESS FPIPPDVML+PM+LA   +A+ IA VCT++SVLGG+LGYAIGY+LF TLG  ++  YGLQ+  D++   F  YG+WIILIKGLT IPY
Sbjct:    1 MFRRLYDWVIALAGHRHAVPAMGAVSFLESSVFPIPPDVMLVPMVLANRAKAFQIALVCTVASVLGGLLGYAIGYYLFETLGAWVVRAYGLQSARDSFMAGFEHYGIWIILIKGLTPIPY 120          
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Match: A0A8J7N617_9PROT (DedA family protein n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7N617_9PROT)

HSP 1 Score: 162 bits (409), Expect = 2.420e-48
Identity = 77/120 (64.17%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    1 MFRNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPDRAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRVMFADYGLWIILIKGLTHIPY 360
            M R +YD T+  A   HA+ AMG VSF ESSFFPIPPD +LIPM+LARPDR W IA VCT +SVLGG+ GYAIGYFL+ TLGQ +I+ YG+Q     +R  FA YGLW+IL+KGLT IPY
Sbjct:    1 MLRKMYDKTIALASKPHAMWAMGAVSFTESSFFPIPPDALLIPMVLARPDRGWTIAFVCTAASVLGGLFGYAIGYFLYETLGQWLINLYGMQQAGHEFRAAFAAYGLWVILVKGLTPIPY 120          
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Match: A0A7H1N3P0_9PROT (DedA family protein n=1 Tax=Defluviicoccus vanus TaxID=111831 RepID=A0A7H1N3P0_9PROT)

HSP 1 Score: 160 bits (406), Expect = 6.690e-48
Identity = 74/120 (61.67%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    1 MFRNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPDRAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRVMFADYGLWIILIKGLTHIPY 360
            M R LYDW MR A    A+  +  VSFAESSFFPIPPD M++PM+LA+P RAW IATVCT++SV+GG  GYAIGY+L+  +G+ I++FYG QA FD +R  F  +G+WIILIKGLT IPY
Sbjct:    1 MLRRLYDWVMRAAESPQALKWLAAVSFAESSFFPIPPDAMIVPMVLAQPRRAWLIATVCTIASVVGGFFGYAIGYYLYEGVGRHIVEFYGYQAAFDRFRDEFQHWGMWIILIKGLTPIPY 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6504.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYJ5_9PROT1.470e-6881.67Cytochrome B n=1 Tax=Alphaproteobacteria bacterium... [more]
A0A537N1D8_9PROT5.320e-5267.80DedA family protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A5J6N3P2_9PROT2.220e-5167.50Cytochrome b561 n=2 Tax=Hypericibacter TaxID=27053... [more]
A0A5C6TUI8_9SPHN4.340e-5162.50DedA family protein n=1 Tax=Sphingosinicella ginse... [more]
A0A1F3A0B3_9PROT4.470e-5166.67Cytochrome B n=4 Tax=Alphaproteobacteria TaxID=282... [more]
A0A521R5F3_9HYPH2.090e-4963.33DedA family protein n=2 Tax=Reyranella TaxID=44521... [more]
A0A259MD90_9PROT5.970e-4965.83Cytochrome B n=5 Tax=Alphaproteobacteria TaxID=282... [more]
A0A5C8P809_9HYPH5.970e-4965.00DedA family protein n=2 Tax=Hyphomicrobiales TaxID... [more]
A0A8J7N617_9PROT2.420e-4864.17DedA family protein n=1 Tax=Candidatus Odyssella s... [more]
A0A7H1N3P0_9PROT6.690e-4861.67DedA family protein n=1 Tax=Defluviicoccus vanus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6504contigP-wetherbeei_contig6504:1..360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380394.JADL01000003_gene5224
PFAMsSNARE_assoc
Model size360
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.35e-49
EggNOG OGsCOG1238@1|root,COG1238@2|Bacteria,1MWED@1224|Proteobacteria,2U78A@28211|Alphaproteobacteria,2JS4Y@204441|Rhodospirillales
DescriptionSNARE associated Golgi protein
Cds size360
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186918.5455458-CDS-P-wetherbeei_contig6504:0..3601683186918.5455458-CDS-P-wetherbeei_contig6504:0..360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6504 1..360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6504.1.1prot_P-wetherbeei_contig6504.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6504 1..360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6504.1.1

>prot_P-wetherbeei_contig6504.1.1 ID=prot_P-wetherbeei_contig6504.1.1|Name=mRNA_P-wetherbeei_contig6504.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MFRNLYDWTMRQAGGKHAVPAMGVVSFAESSFFPIPPDVMLIPMILARPD
RAWWIATVCTLSSVLGGVLGYAIGYFLFATLGQMIIDFYGLQAGFDAYRV
MFADYGLWIILIKGLTHIPY
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mRNA from alignment at P-wetherbeei_contig6504:1..360-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6504.1.1 ID=mRNA_P-wetherbeei_contig6504.1.1|Name=mRNA_P-wetherbeei_contig6504.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig6504:1..360- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTAGAAATCTATATGACTGGACCATGCGGCAGGCGGGAGGTAAGCA CGCCGTGCCCGCCATGGGGGTGGTATCGTTTGCGGAAAGCTCGTTCTTCC CGATCCCGCCCGATGTGATGCTGATCCCCATGATACTGGCGCGGCCCGAT CGCGCCTGGTGGATTGCCACCGTGTGTACGCTCAGCTCCGTCCTTGGGGG TGTGCTGGGTTACGCCATCGGTTATTTTCTGTTTGCCACGCTGGGCCAGA TGATTATCGATTTTTATGGCTTGCAGGCAGGGTTTGATGCCTACCGGGTG ATGTTTGCCGACTATGGTTTGTGGATCATTCTGATCAAGGGGCTGACCCA CATTCCCTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6504:1..360-

>mRNA_P-wetherbeei_contig6504.1.1 ID=mRNA_P-wetherbeei_contig6504.1.1|Name=mRNA_P-wetherbeei_contig6504.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig6504:1..360- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTAGAAATCTATATGACTGGACCATGCGGCAGGCGGGAGGTAAGCA
CGCCGTGCCCGCCATGGGGGTGGTATCGTTTGCGGAAAGCTCGTTCTTCC
CGATCCCGCCCGATGTGATGCTGATCCCCATGATACTGGCGCGGCCCGAT
CGCGCCTGGTGGATTGCCACCGTGTGTACGCTCAGCTCCGTCCTTGGGGG
TGTGCTGGGTTACGCCATCGGTTATTTTCTGTTTGCCACGCTGGGCCAGA
TGATTATCGATTTTTATGGCTTGCAGGCAGGGTTTGATGCCTACCGGGTG
ATGTTTGCCGACTATGGTTTGTGGATCATTCTGATCAAGGGGCTGACCCA
CATTCCCTAT
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