mRNA_P-wetherbeei_contig65.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig65.3.1
Unique NamemRNA_P-wetherbeei_contig65.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Match: A0A835ZA98_9STRA (Cytochrome c oxidase assembly protein PET191 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA98_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.600e-22
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  115 MTKDCKEHARALVECMQQTECVEKGGSITXXIKVQKAVAQCDMERRLYFECRRGQLDMRTRIRGSRSF 318
            M+ DCKEHARAL+ CMQ+++C++ GG +   +K  + V QC+++RR YFECRRGQLDMRTRIRG RS+
Sbjct:    1 MSSDCKEHARALLACMQESKCMQGGGKLRECLKTDE-VHQCELQRRSYFECRRGQLDMRTRIRGPRSY 67          
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Match: D7FZB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB9_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.300e-15
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  115 MTKDCKEHARALVECMQQTECVEKGGSITXXIKVQKAVAQCDMERRLYFECRRGQLDMRTRIRGSRSF 318
            M +DCKE ARAL  CM++T+C++ GG +   +K       C  + + +FEC+RGQLDMRTRIRG RSF
Sbjct:    1 MGRDCKEAARALYACMKKTQCMKDGGRLKDCLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRGERSF 67          
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Match: K8YUW7_NANGC (Cytochrome c oxidase assembly mitochondrial n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YUW7_NANGC)

HSP 1 Score: 73.6 bits (179), Expect = 6.090e-15
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  115 MTKDCKEHARALVECMQQTECVEKGGSITXXIKVQKAVAQCDMERRLYFECRRGQLDMRTRIRGSRSF 318
            M K CKE A AL+ CMQQ  C++ GGS+T  +K +   A C ++R  YF C+R QLDMRTRIRG+R +
Sbjct:    1 MPKSCKEAAYALLACMQQQPCMKTGGSLTECLKSEDVDA-CSVQRNAYFLCKRSQLDMRTRIRGTRVY 67          
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Match: A0A482S5P5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5P5_9ARCH)

HSP 1 Score: 71.2 bits (173), Expect = 5.040e-14
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  115 MTKDCKEHARALVECMQQTECVEKGGSITXXIKVQKAVAQCDMERRLYFECRRGQLDMRTRIRGSRSF 318
            M K CK+ AR L++CM +T+CV++G  +   +K  +   +C   RR YFEC+RG LDMR RIRG + +
Sbjct:    1 MGKSCKDIARTLLDCMAETQCVQQGQDVKECMKTMEGEDRCGQLRRAYFECKRGSLDMRYRIRGPKVY 68          
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Match: K3X2Q5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2Q5_GLOUD)

HSP 1 Score: 61.6 bits (148), Expect = 3.890e-10
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  115 MTKDCKEHARALVECMQQTECVEKGG-SITXXIKVQKAVAQCDMERRLYFECRRGQLDMRTRIRGSR 312
            M K C++ A AL +CM   EC+  G  ++   +K+++   +C   R+ YFEC+RGQLDMRTRIRG +
Sbjct:    1 MGKSCRDMAEALRDCMVTEECMSDGTRTLKQCLKMKEYAHECRGYRQAYFECKRGQLDMRTRIRGPK 67          
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Match: L1JBB4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBB4_GUITC)

HSP 1 Score: 60.8 bits (146), Expect = 7.030e-10
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 1
Query:  115 MTKDCKEHARALVECMQQTECVEKGGSITXXIKVQKAVAQCDMERRLYFECRRGQLDMRTRIRGSR 312
            M+  CK     L+ C+  T C  +GG++   ++  +    C   R+++FECRRGQ+DMR RIRG+R
Sbjct:    1 MSTSCKNLKNKLLICISTTPCANRGGTVKQCLQDNELPEDCKKIRQMFFECRRGQMDMRNRIRGNR 66          
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Match: A0A8K1CG31_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG31_PYTOL)

HSP 1 Score: 60.5 bits (145), Expect = 1.040e-9
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  115 MTKDCKEHARALVECMQQTECVEKGG-SITXXIKVQKAVAQCDMERRLYFECRRGQLDMRTRIRGSR 312
            M K C++ A  L +CM + EC+  G  ++   +K+++   +C   R  YFEC+RGQLDMRTRIRG +
Sbjct:    1 MGKSCRDMAELLRDCMVEQECMRDGTRTLKQCLKMREYAHECSELRYAYFECKRGQLDMRTRIRGPK 67          
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Match: A0A5D6XTU3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTU3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.360e-9
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  139 ARALVECMQQTECVEKGG-SITXXIKVQKAVAQCDMERRLYFECRRGQLDMRTRIRGSR 312
            A AL +CMQQ +C+  G  S+   +++++   +C   R+ YFECRRGQLDMRTRIRG +
Sbjct:    2 AEALRDCMQQEDCMADGSRSLKECLRLKEFAHECRGYRQAYFECRRGQLDMRTRIRGPK 60          
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Match: A0A5A8EH60_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EH60_CAFRO)

HSP 1 Score: 59.3 bits (142), Expect = 3.250e-9
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1
Query:  127 CKEHARALVECMQQTECVEKGGSITXXIKVQKAVAQCDMERRLYFECRRGQLDMRTRIRGSR 312
            C++    L +C+ +++C+  G S    ++    V QCD+ RR  +ECRRGQLD RTRIRG R
Sbjct:    8 CRDAMHQLAQCLAKSQCISDGHSARECMQ-NGEVPQCDLSRRALYECRRGQLDARTRIRGQR 68          
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Match: A0A8K0F2D8_ANDGO (Mitochondrial CIV assembly protein Coa5/Pet191 n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0F2D8_ANDGO)

HSP 1 Score: 58.9 bits (141), Expect = 3.420e-9
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 1
Query:  115 MTKDCKEHARALVECMQQTECVEKGGSITXXIKVQ-KAVAQCDMERRLYFECRRGQLDMRTRIRG 306
            M K CK     L+ C+  T C + GGS    +    +A A CD  R++YFECRRG LDMR RIRG
Sbjct:    1 MGKSCKGIRAELIACLIGTPCGQNGGSPKECLHGHPEAAAACDQLRKMYFECRRGNLDMRKRIRG 65          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig65.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZA98_9STRA4.600e-2260.29Cytochrome c oxidase assembly protein PET191 n=1 T... [more]
D7FZB9_ECTSI4.300e-1551.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YUW7_NANGC6.090e-1552.94Cytochrome c oxidase assembly mitochondrial n=3 Ta... [more]
A0A482S5P5_9ARCH5.040e-1445.59Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
K3X2Q5_GLOUD3.890e-1044.78Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
L1JBB4_GUITC7.030e-1039.39Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A8K1CG31_PYTOL1.040e-943.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XTU3_9STRA2.360e-949.15Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A5A8EH60_CAFRO3.250e-943.55Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A8K0F2D8_ANDGO3.420e-947.69Mitochondrial CIV assembly protein Coa5/Pet191 n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig65contigP-wetherbeei_contig65:1543..1920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000021098
PFAMsPet191_N
Model size378
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.97e-11
EggNOG OGsKOG4114@1|root,KOG4114@2759|Eukaryota,1MHXH@121069|Pythiales
Ec32 ortholog descriptionCytochrome c oxidase assembly protein PET191
Ec32 orthologEc-07_001660.1
Descriptioncytochrome c oxidase assembly protein. Source PGD
Cds size207
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.9302776-UTR-P-wetherbeei_contig65:1542..16561683186917.9302776-UTR-P-wetherbeei_contig65:1542..1656Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig65 1543..1656 +
1683186917.9484503-UTR-P-wetherbeei_contig65:1863..19201683186917.9484503-UTR-P-wetherbeei_contig65:1863..1920Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig65 1864..1920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.940205-CDS-P-wetherbeei_contig65:1656..18631683186917.940205-CDS-P-wetherbeei_contig65:1656..1863Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig65 1657..1863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig65.3.1prot_P-wetherbeei_contig65.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig65 1657..1863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig65.3.1

>prot_P-wetherbeei_contig65.3.1 ID=prot_P-wetherbeei_contig65.3.1|Name=mRNA_P-wetherbeei_contig65.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
MTKDCKEHARALVECMQQTECVEKGGSITECIKVQKAVAQCDMERRLYFE
CRRGQLDMRTRIRGSRSF*
back to top

mRNA from alignment at P-wetherbeei_contig65:1543..1920+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig65.3.1 ID=mRNA_P-wetherbeei_contig65.3.1|Name=mRNA_P-wetherbeei_contig65.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig65:1543..1920+ (Phaeothamnion wetherbeei SAG_119_79)
GAACGAAGCTCAGGACTGCATTCTTAGAAAAACGAAGCAGCCACCGACTT TTCCCTGCAGTTCGTCTCGTGCACAATCCAGTTCTTTGACCGCTCGCTCT CGCTGGGACACGACATGACAAAGGATTGCAAAGAGCACGCACGCGCCTTA GTCGAGTGCATGCAGCAAACCGAGTGCGTAGAGAAAGGCGGCTCAATCAC GGAGTGCATAAAGGTTCAAAAGGCCGTGGCTCAATGTGACATGGAGAGAC GTTTGTACTTCGAGTGTCGGCGAGGACAGCTCGACATGCGAACACGGATA CGTGGATCTCGCAGCTTCTAATTAAAATGCCTTGTAAGCATCATATGTTA CTCTGATTTGTCGTTCGTTTCCTTTCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig65:1543..1920+

>mRNA_P-wetherbeei_contig65.3.1 ID=mRNA_P-wetherbeei_contig65.3.1|Name=mRNA_P-wetherbeei_contig65.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig65:1543..1920+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAAAGGATTGCAAAGAGCACGCACGCGCCTTAGTCGAGTGCATGCA
GCAAACCGAGTGCGTAGAGAAAGGCGGCTCAATCACGGAGTGCATAAAGG
TTCAAAAGGCCGTGGCTCAATGTGACATGGAGAGACGTTTGTACTTCGAG
TGTCGGCGAGGACAGCTCGACATGCGAACACGGATACGTGGATCTCGCAG
CTTCTAA
back to top