mRNA_P-wetherbeei_contig65.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig65.1.1
Unique NamemRNA_P-wetherbeei_contig65.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Match: D8LBC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.220e-21
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   22 GLIRWEQARARWTSGGSRDAP---RRRAKSMDVDQVIDTIFSGTSD-GTLPSPVTLPQMVDLLVDLWEAEGLFD 231
            GL+RWE+ R  W +GG+       R RA++MDVD+VID +FSG    G LP  V LPQM+DLLVDLWEAEGLFD
Sbjct:   27 GLLRWERERKAWLAGGTGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 100          
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Match: A0A4D9DFS2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFS2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.790e-17
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   22 GLIRWEQARARWTS-------GGSRDAPR-------RRAKSMDVDQVIDTIFSGTSDGTLPSPVTLPQMVDLLVDLWEAEGLFD 231
            GL  W + R  W S       GG+R  P        +RA+S+DVD VI++IFS T D  LP PV L QM+DLLVD WEA+GL+D
Sbjct:   52 GLKLWSERRREWQSKNNQSEGGGTRSEPPPARSQLPKRARSVDVDHVIESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD 135          
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Match: A0A835Z3H3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.000e-17
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   22 GLIRWEQARARWTSGGSRDAPR-----------RRAKSMDVDQVIDTIFSGTSDGTLPSPVTLPQMVDLLVDLWEAEGLFD 231
            GL RWE  R RW   G                 R+A+++D D +IDTIF G  +G LP PV LPQM++LLVDLWE EGL+D
Sbjct:   97 GLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGNGVLPRPVMLPQMINLLVDLWETEGLYD 177          
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Match: A0A7S2E517_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E517_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.630e-15
Identity = 43/102 (42.16%), Postives = 51/102 (50.00%), Query Frame = 1
Query:   16 DIGLIRWEQARARWTSGGSRDAP----------RRRAKSMDVDQVIDTIFSGT----------------------SDGTLPSPVTLPQMVDLLVDLWEAEGL 225
            ++GL RWE  RARW S  S D            +R A  +DVD+VID +FS                         DG+ P PV LPQMVD+LVDLWEAEGL
Sbjct:   51 NVGLQRWEVERARWLSSASLDETHPTNKSVQQQQRHAIELDVDEVIDCVFSNRWRQTAQQLPSGGRGGRGFHQKIDDGSFPCPVPLPQMVDILVDLWEAEGL 152          
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Match: A0A7S1D623_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D623_CYCTE)

HSP 1 Score: 73.2 bits (178), Expect = 2.440e-14
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   22 GLIRWEQARARWTSGGSRDAPRRRAKSMDVDQVIDTIFSG---TSDG---TLPSPVTLPQMVDLLVDLWEAEGL 225
            GL+RWE++RA W    + D+  + A  +DVD +ID IFS      +G   + P PV L QMVD+LVDLWEAEGL
Sbjct:  107 GLLRWEESRATWLKSDTSDSTAKAAIPLDVDAIIDLIFSQRWRNQEGEASSFPQPVPLTQMVDILVDLWEAEGL 180          
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Match: W7U1W8_9STRA (DUF4050 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1W8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.150e-14
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   91 RAKSMDVDQVIDTIFSGTSDGTLPSPVTLPQMVDLLVDLWEAEGLFD 231
            RA+S+DVD VI++IFS T D  LP PV L QM+DLLVD WEA+GL+D
Sbjct:   67 RARSVDVDHVIESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD 113          
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Match: A0A7S1E125_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E125_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.610e-13
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   22 GLIRWEQARARWTSGG--SRDAPRRRAKSMDVDQVIDTIFS------GTSDGTLPSPVTLPQMVDLLVDLWEAEGL 225
            G ++WE++R +W S    S    +  AK++DVD++ID IFS             P  V LPQMVD+LVDLWEAEGL
Sbjct:   39 GFLKWEESRNKWISSTQESNSKTKTGAKALDVDEIIDLIFSQRWRSQSPERNQFPEAVPLPQMVDILVDLWEAEGL 114          
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Match: A0A7S2XR72_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XR72_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.350e-12
Identity = 40/97 (41.24%), Postives = 49/97 (50.52%), Query Frame = 1
Query:   16 DIGLIRWEQARARWT-----SGGSRD-----APRRRAKSMDVDQVIDTIFSG-----------------TSDGTLPSPVTLPQMVDLLVDLWEAEGL 225
            + GL+ WE+ R  W      S G  D        R A ++DVD++ID IFS                  T+ GT   PV LPQMVD+LVDLWEAEGL
Sbjct:   28 NTGLLHWEKGRKHWLRKKAGSVGEEDKKEEEGEERAAINIDVDEIIDIIFSNRWRVTSPSNSLPGKTTETARGTFAHPVPLPQMVDILVDLWEAEGL 124          
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Match: B7FW96_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FW96_PHATC)

HSP 1 Score: 65.5 bits (158), Expect = 3.180e-11
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   16 DIGLIRWEQARARWTSGGSRDAPR--RRAKSMDVDQVIDTIFSG-------TSDGTLPSPVTLPQMVDLLVDLWEAEGL 225
            + GL  WE++RA W +  +RD  R    AK ++VD++ID IF+        T     P+PV LPQM+D+L DLWEAEGL
Sbjct:  124 NYGLEFWEKSRATWLAT-NRDETRISPHAKPLEVDEIIDAIFAAPRQWRETTGPTRFPTPVPLPQMIDILQDLWEAEGL 201          
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Match: A0A6S8ZSI1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZSI1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.530e-10
Identity = 40/104 (38.46%), Postives = 50/104 (48.08%), Query Frame = 1
Query:   16 DIGLIRWEQARARWTSGGS-RDAP-----------RRRAKSMDVDQVIDTIFSGT----------------------SDGTLPSPVTLPQMVDLLVDLWEAEGL 225
            ++GL RWE  R +W S  +  DA            +R A  +DVD+VID +FS                         DG+ P PV L QMVD+LVDLWEAEGL
Sbjct:   69 NVGLQRWEVVRDQWLSTSTTHDATTEKNHSIYKKMQRHAVELDVDEVIDCVFSNRWRQTAQTSPSGKSSGKGIHQKIDDGSFPCPVPLSQMVDILVDLWEAEGL 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig65.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC5_ECTSI6.220e-2159.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9DFS2_9STRA6.790e-1748.81Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835Z3H3_9STRA9.000e-1748.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2E517_9STRA9.630e-1542.16Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1D623_CYCTE2.440e-1450.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
W7U1W8_9STRA4.150e-1465.96DUF4050 domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S1E125_9STRA3.610e-1346.05Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2XR72_9STRA7.350e-1241.24Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7FW96_PHATC3.180e-1145.57Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6S8ZSI1_9STRA1.530e-1038.46Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig65contigP-wetherbeei_contig65:70..303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LBC5
Model size234
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-21
EggNOG OGs2E6JY@1|root,2SD9A@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_004430.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.9021668-CDS-P-wetherbeei_contig65:69..3031683186917.9021668-CDS-P-wetherbeei_contig65:69..303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig65 70..303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig65.1.1prot_P-wetherbeei_contig65.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig65 70..303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig65.1.1

>prot_P-wetherbeei_contig65.1.1 ID=prot_P-wetherbeei_contig65.1.1|Name=mRNA_P-wetherbeei_contig65.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
RPPPPDIGLIRWEQARARWTSGGSRDAPRRRAKSMDVDQVIDTIFSGTSD
GTLPSPVTLPQMVDLLVDLWEAEGLFD*
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mRNA from alignment at P-wetherbeei_contig65:70..303+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig65.1.1 ID=mRNA_P-wetherbeei_contig65.1.1|Name=mRNA_P-wetherbeei_contig65.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig65:70..303+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCCCCCCCCCCCCGACATAGGACTGATCCGGTGGGAGCAGGCGCGGGC GAGATGGACGTCGGGAGGCAGCAGAGACGCGCCTCGCCGCCGAGCCAAAT CTATGGATGTAGACCAAGTGATAGACACTATTTTCTCGGGAACGTCAGAT GGCACATTGCCATCGCCAGTCACATTACCGCAAATGGTGGATCTGTTGGT TGACCTGTGGGAAGCAGAAGGGCTGTTTGATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig65:70..303+

>mRNA_P-wetherbeei_contig65.1.1 ID=mRNA_P-wetherbeei_contig65.1.1|Name=mRNA_P-wetherbeei_contig65.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig65:70..303+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCCCCCCCCCCCCGACATAGGACTGATCCGGTGGGAGCAGGCGCGGGC
GAGATGGACGTCGGGAGGCAGCAGAGACGCGCCTCGCCGCCGAGCCAAAT
CTATGGATGTAGACCAAGTGATAGACACTATTTTCTCGGGAACGTCAGAT
GGCACATTGCCATCGCCAGTCACATTACCGCAAATGGTGGATCTGTTGGT
TGACCTGTGGGAAGCAGAAGGGCTGTTTGATTGA
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