mRNA_P-wetherbeei_contig6496.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6496.3.2
Unique NamemRNA_P-wetherbeei_contig6496.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A7S2SC35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC35_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.000e-13
Identity = 54/155 (34.84%), Postives = 61/155 (39.35%), Query Frame = 3
Query:  423 GRVT*PVAKKTMATTVP-LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLK-TRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK*P 881
            G V  P    TM++ V  +KTT  D RFP  NQA HCWN YN+WV+ LK   GDE   D+ K  RQ A SLCP EWV                                                             KWDEEREEG F G+K P
Sbjct:    8 GPVASPSPPATMSSIVNFMKTTQADKRFPNQNQANHCWNRYNEWVMCLKGTQGDE---DACKGVRQLAVSLCPCEWVE------------------------------------------------------------KWDEEREEGAFAGIKFP 99          
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: F0XWE0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWE0_AURAN)

HSP 1 Score: 75.1 bits (183), Expect = 2.550e-13
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  474 LKTTPPDSRFPTTNQAAHCWNL-------YNQWVLALKKADGDESNPDSLKT-RQAAASLCPIEW 644
            +KTTPPD RFPT NQA HCWN        YN+WVL LKK DGDE   D+ K  RQ A S+CP +W
Sbjct:    1 IKTTPPDKRFPTQNQANHCWNRAAAASDRYNEWVLCLKKTDGDE---DACKPMRQFALSICPDDW 62          
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A7S0GB85_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GB85_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.640e-13
Identity = 45/140 (32.14%), Postives = 55/140 (39.29%), Query Frame = 3
Query:  456 MATTVPLKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKTRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
            M T + +KTTP    FP+ NQAAHCWN YN+WV+ +K  +GD        +RQ A S+CP EW                                                              KWDEEREEGTFPG+K
Sbjct:   43 MITNMKVKTTPRQHNFPSQNQAAHCWNRYNEWVVCMKTTEGDRGK--CAGSRQLAGSICPDEWQE------------------------------------------------------------KWDEEREEGTFPGMK 120          
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: D8LG10_ECTSI (Cytochrome c oxidase subunit 6b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG10_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 7.480e-13
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  477 KTTPPDSRFPTTNQAAHCWNLYNQWVLALKKAD--GDESNPDSLKTRQAAASLCPIEWVRCEEW 662
            KT P DSRFPT NQA HCWNLYN+WVL  KKA+  GD++     + R  A +LCP EW   E+W
Sbjct:    9 KTAPSDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGDDAKK-CYRKRHNALALCPDEWT--EKW 69          
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A8J2WWH0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWH0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.030e-13
Identity = 50/144 (34.72%), Postives = 63/144 (43.75%), Query Frame = 3
Query:  450 KTMATTVP-LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKT-RQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
            K M+  +P +KTTP D RFP+TNQA+HCWN YN++V+ LKK + DE   D+ K  RQ A S+CP +W                                W                             KWDEEREEGTF G+K
Sbjct:   30 KKMSGLIPHIKTTPYDKRFPSTNQASHCWNRYNEYVMCLKKTESDE---DACKPMRQLALSICPDDW--------------------------------WN----------------------------KWDEEREEGTFSGVK 110          
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A6T5Y8J0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5Y8J0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.280e-11
Identity = 44/135 (32.59%), Postives = 57/135 (42.22%), Query Frame = 3
Query:  474 LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKT-RQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
            ++TTPPD+RFP+ NQA HCWN YN+W++ LK+   DE   DS K  RQ A S+CP                                                            ++   KWDEEREEGT+PG+K
Sbjct:   34 VRTTPPDARFPSFNQAGHCWNRYNEWLVCLKQTGKDE---DSCKPMRQLATSVCP------------------------------------------------------------SIMYDKWDEEREEGTYPGVK 105          
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A1E7FVA6_9STRA (Cytochrome c oxidase subunit H n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVA6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.700e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  474 LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKTRQAAASLCPIEWVRCEEWPLS 671
            ++TTP D+RFP+ NQA HCWN YN+W+L  KK  GD+++      RQ A+S+CP  W+  E W  S
Sbjct:   32 VRTTPRDARFPSQNQALHCWNRYNEWLLC-KKQSGDDADEKCQVYRQYASSICPSPWI--ENWDES 94          
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A7S4JKT8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JKT8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.700e-11
Identity = 42/134 (31.34%), Postives = 56/134 (41.79%), Query Frame = 3
Query:  474 LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKTRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
            ++TTP D+RFP+ NQ+ HCWN YN+W+L LK   GDE+    +  RQ A S+CP                                 S+W+                            KWDEEREE T+PG+K
Sbjct:   33 VRTTPRDARFPSQNQSNHCWNRYNEWLLCLKSTGGDEAGCKHM--RQMAVSICP---------------------------------SIWS---------------------------EKWDEEREENTYPGIK 104          
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A6V2AAL1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2AAL1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.860e-11
Identity = 41/134 (30.60%), Postives = 54/134 (40.30%), Query Frame = 3
Query:  474 LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKTRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
            ++TTP D+RFP+ NQA HCWN YN+W++ LK+  GDE    ++  RQ A ++CP  W                                                              KWDEEREE TFPG+K
Sbjct:   28 VRTTPRDARFPSQNQANHCWNRYNEWLVCLKQTKGDEEGCQNM--RQLALNICPAIWSE------------------------------------------------------------KWDEEREEKTFPGVK 99          
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A7S4JKQ2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JKQ2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.850e-11
Identity = 42/134 (31.34%), Postives = 56/134 (41.79%), Query Frame = 3
Query:  474 LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKTRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
            ++TTP D+RFP+ NQ+ HCWN YN+W+L LK   GDE+    +  RQ A S+CP                                 S+W+                            KWDEEREE T+PG+K
Sbjct:   75 VRTTPRDARFPSQNQSNHCWNRYNEWLLCLKSTGGDEAGCKHM--RQMAVSICP---------------------------------SIWS---------------------------EKWDEEREENTYPGIK 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SC35_9STRA2.000e-1334.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0XWE0_AURAN2.550e-1358.46Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S0GB85_9STRA4.640e-1332.14Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
D8LG10_ECTSI7.480e-1356.25Cytochrome c oxidase subunit 6b n=1 Tax=Ectocarpus... [more]
A0A8J2WWH0_9STRA8.030e-1334.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6T5Y8J0_9STRA1.280e-1132.59Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A1E7FVA6_9STRA1.700e-1148.48Cytochrome c oxidase subunit H n=1 Tax=Fragilariop... [more]
A0A7S4JKT8_9STRA1.700e-1131.34Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6V2AAL1_9STRA2.860e-1130.60Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4JKQ2_9STRA4.850e-1131.34Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6496contigP-wetherbeei_contig6496:1154..2751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T001670
PFAMsCOX6B
Model size1322
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.54e-17
EggNOG OGsKOG3057@1|root,KOG3057@2759|Eukaryota,1MHFT@121069|Pythiales
Ec32 ortholog descriptioncytochrome c oxidase subunit 6b
Ec32 orthologEc-21_005020.1
DescriptionCytochrome c oxidase subunit 6b-1 (ISS). Source PGD
Cds size270
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.6727247-UTR-P-wetherbeei_contig6496:1153..17501683186917.6727247-UTR-P-wetherbeei_contig6496:1153..1750Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6496 1154..1750 -
1683186917.714225-UTR-P-wetherbeei_contig6496:2296..27511683186917.714225-UTR-P-wetherbeei_contig6496:2296..2751Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6496 2297..2751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.6853302-CDS-P-wetherbeei_contig6496:1750..19431683186917.6853302-CDS-P-wetherbeei_contig6496:1750..1943Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6496 1751..1943 -
1683186917.6981206-CDS-P-wetherbeei_contig6496:2219..22961683186917.6981206-CDS-P-wetherbeei_contig6496:2219..2296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6496 2220..2296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6496.3.2prot_P-wetherbeei_contig6496.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6496 1751..2296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6496.3.2

>prot_P-wetherbeei_contig6496.3.2 ID=prot_P-wetherbeei_contig6496.3.2|Name=mRNA_P-wetherbeei_contig6496.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MATTVPLKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLK
TRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*
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mRNA from alignment at P-wetherbeei_contig6496:1154..2751-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6496.3.2 ID=mRNA_P-wetherbeei_contig6496.3.2|Name=mRNA_P-wetherbeei_contig6496.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1598bp|location=Sequence derived from alignment at P-wetherbeei_contig6496:1154..2751- (Phaeothamnion wetherbeei SAG_119_79)
CGCTGCGTCAGGACTGCAAAGCACTAAGATAGATAAAATAGAGCATGAAG CATTCGCCTGGATGACCGGTGGACTGTCACCAAAAAAGGCACCTAAATTG CATTCTTTGAAGACTGTGTCGAAGGCTGACCAATGTAGACTGTTAATGTA AAACCGAAGGCAATCTCTTCGCCAAAAATGAGAGCGTGCTATCGAATACG CACGGGGTTCCAATGACCAAATTACCTCCCCACTTGTTCCACTTTCTTTC TTTTCTCTCTTCCCTAGCTCTCTATTATGTTAAGACGGACGAGCACATGG CGGACATGCTCACTAAGGCGCTGCCGGGGCCGCGCCTGTGGCAGCTGTGT GTCGTAGTCCTTTCGAAAAGGGTTTCCTGTGTCCTGTTTCCTGAGTTTTA GGCGCGCGTTATTATTCTTATTGGCCGAGTAACATAACCAGTTGCAAAGA AAACCATGGCGACGACCGTGCCGCTCAAGACGACGCCTCCGGACAGCCGC TTTCCCACCACGAACCAAGCAGCGCACTGCTGGTAAAAGGGAGCTATGTA AAGCCTGAGAAGACCGCTTTGCGATAGATAAAGGCGTTACAACAACAATG CTCTCATGCGCGTGCCTGGTATTTGCATTCTGGACAGCGAAACATCTTCC ATCCTTTCGCAGCCCTTGCAACACCCGCTCTAAACTCTCCGGCAAAGTTT AAGCCTGTTGCTTCACAATTTTAATGTTATGTAATGAGTGTGCCGCGGTC ACTTGTCAGGTTGTCAACGACGCAAACATCCATCCTTTCTTTCTCTTTCT CTGTGCAGGAACCTCTACAACCAGTGGGTGCTTGCCCTCAAGAAGGCGGA TGGGGACGAAAGCAACCCCGATTCGCTGAAAACTCGACAGGCCGCGGCTA GCCTTTGCCCAATCGAATGGGTGCGCTGTGAAGAGTGGCCATTGTCGGTC CTGTTGTGCTTCATCCGTGTAACCAGGACCCGCCTTGTCAACATTCTTTG AGCCTTACGGTCACTTTGGACACTCGTGAAGTTTGCTGCTCTTTGCGTCG ATCACATTTCCTTTTTTAACACCTCTCTACATCCCCCGCCCGCTCTGTAG GTGACAAAGTGGGACGAAGAGCGGGAGGAAGGAACATTCCCTGGCCTCAA GTAACCCCTCATTTTCCGAACGGAGCGAGGAAATTGGAGACAGCGGAGAC AAGGGAGAGGGCTGGCGAAATGTGCATAGAGGGTTTGGGTCAGCCCGGCC CGCGGCACCTATTTCTGCGGCAACACCCGGGCCTCGCTTTGGTGGGCGGA AGTTCGTCTCCTTCCGAAGGTGCTAGGGGAACAGCGCCGCGCGCTGCTGG GGATCCCAGAGGTTCATAGCATTGTTGTAGTAGCGAGGACGGCATTTTTT CAAAGGATTGCAATTAGCCGGCTAGCCAATCTCCTCTTGTCGCCTTGTTT CAGTGTTGGTCTGAAGTGTAGTGATTTCCGATATTTCTCTTGCAACATCG TCTCCTTGGTGGTTCAGACGCTTACATTTTCGCAACCGCTGGCCTTCCGC TGAGGCAAAGAGGCGTAAAAAGCGCGAAAATGGGTCGGTGCGGTTCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6496:1154..2751-

>mRNA_P-wetherbeei_contig6496.3.2 ID=mRNA_P-wetherbeei_contig6496.3.2|Name=mRNA_P-wetherbeei_contig6496.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig6496:1154..2751- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGACCGTGCCGCTCAAGACGACGCCTCCGGACAGCCGCTTTCC
CACCACGAACCAAGCAGCGCACTGCTGGAACCTCTACAACCAGTGGGTGC
TTGCCCTCAAGAAGGCGGATGGGGACGAAAGCAACCCCGATTCGCTGAAA
ACTCGACAGGCCGCGGCTAGCCTTTGCCCAATCGAATGGGTGCGCTGTGA
AGAGTGGCCATTGTCGGTCCTGTTGTGCTTCATCCGTGTAACCAGGACCC
GCCTTGTCAACATTCTTTGA
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