mRNA_P-wetherbeei_contig6492.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6492.3.1
Unique NamemRNA_P-wetherbeei_contig6492.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Match: A0A3D4JEZ6_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A3D4JEZ6_9CHLR)

HSP 1 Score: 93.6 bits (231), Expect = 8.520e-23
Identity = 46/94 (48.94%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   19 MDDQQLKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGSRTRVNQSRRIIREGRRDDALEHIAQSNRIDSKWTGKAKSLLAAN 300
            M+D QLKRS++S+GM CFV+++E F DS++ ND  V++LM+ + + ESG +TRV Q++RII  G+  DAL+ I  S++ID++   +AK LLA N
Sbjct:    1 MNDTQLKRSIQSVGMKCFVKYFEHFLDSTIKNDELVELLMKNEGWIESGCKTRVAQAKRIINHGKSKDALKIIVNSSKIDAEINLQAKELLANN 94          
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Match: A0A549T2J8_METSR (Uncharacterized protein n=2 Tax=Methylocystaceae TaxID=31993 RepID=A0A549T2J8_METSR)

HSP 1 Score: 92.0 bits (227), Expect = 3.090e-22
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 1
Query:   19 MDDQQLKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGSRTRVNQSRRIIREGRRDDALEHIAQSNRIDSKWTGKAKSLLA 294
            M+D QL R LRS+GMACFV+++E+F+D S+SN  A  I++ ++ Y+E+ + TRV+ +RRIIREGR  DAL  IA +  +D +   +A+SL++
Sbjct:    1 MNDNQLARRLRSVGMACFVQYFELFSDKSISNAAAAAIIVAKESYAETATNTRVSLARRIIREGRARDALRMIAGATNVDPEAASRARSLVS 92          
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Match: Q1N231_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=Q1N231_9GAMM)

HSP 1 Score: 91.7 bits (226), Expect = 4.030e-22
Identity = 44/90 (48.89%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   19 MDDQQLKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGSRTRVNQSRRIIREGRRDDALEHIAQSNRIDSKWTGKAKSL 288
            M+D QL RSLRSIG ACFV+++  F+D ++S++  +D+LM+Q+ Y+ESG +TR++ SRRII  GR+D+AL  I  S R++++   KA+ L
Sbjct:    1 MNDDQLDRSLRSIGKACFVKYFAEFSDLAISSEDLIDMLMQQEGYTESGCKTRISNSRRIISSGRQDEALAMIIASERVEAEIVDKAREL 90          
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Match: A0A8J6SQ61_9CYAN (Uncharacterized protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A8J6SQ61_9CYAN)

HSP 1 Score: 90.1 bits (222), Expect = 1.770e-21
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   19 MDDQQLKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGSRTRVNQSRRIIREGRRDDALEHIAQSNRIDSKWTGKAKSLL 291
            M+D QL RS++SIGM CFV+++E F+D    +D  ++ LM+ + Y ESG+RTRV+QSRRI RE R  DAL  IA+S R +S    KAK L+
Sbjct:    1 MNDDQLYRSIQSIGMGCFVKYFEAFSDREKRDDDLIEALMKIEGYEESGARTRVSQSRRIFRENRAVDALNKIAESERTESWVLAKAKYLI 91          
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Match: A0A0P6XN87_9CHLR (Uncharacterized protein n=1 Tax=Levilinea saccharolytica TaxID=229921 RepID=A0A0P6XN87_9CHLR)

HSP 1 Score: 86.7 bits (213), Expect = 4.010e-20
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   19 MDDQQLKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGSRTRVNQSRRIIREGRRDDALEHIAQSNRIDSKWTGKAKSLL 291
            MDD +L+++++S G ACFV++YE+F D + SN   V++LMRQ++Y+E  S TRV+ SR+IIR G     L  I QS+++D     KAK LL
Sbjct:    1 MDDMELEKAIKSTGKACFVKYYELFRDPTRSNGDLVELLMRQERYAEQASWTRVSLSRKIIRSGNGPKILREILQSDKLDDDIINKAKELL 91          
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Match: UPI0004812E07 (hypothetical protein n=1 Tax=Leptolyngbya sp. PCC 6406 TaxID=1173264 RepID=UPI0004812E07)

HSP 1 Score: 85.1 bits (209), Expect = 3.930e-19
Identity = 43/100 (43.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    1 VHKANIMDDQQLKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGSRTRVNQSRRIIREGRRDDALEHIAQSNRIDSKWTGKAKSLLAAN 300
            + +A   +D QL+RS++S+GM CF +++E F+D   S+D  V+ LM+ + Y+E G+RTRV+Q+R I+RE R  DAL+ I +S R +S    KA+ L+  N
Sbjct:   30 MREAKPRNDDQLQRSIQSVGMGCFAKYFEAFSDLEKSDDDLVEALMKIEGYAEGGARTRVSQARHILREDRAVDALKKITESKRTESWVIAKARYLVEEN 129          
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Match: UPI001430123A (hypothetical protein n=1 Tax=Maribellus sediminis TaxID=2696285 RepID=UPI001430123A)

HSP 1 Score: 82.0 bits (201), Expect = 2.520e-18
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   19 MDDQQLKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGSRTRVNQSRRIIREGRRDDALEHIAQSNRIDSKWTGKAKSLLA 294
            MD  +L R L+SIG  CF+E+++ F D   +N   V++LMR K Y+ESGS+TRV+QSRRII+E    DAL +I  S  +       AK +LA
Sbjct:    1 MDSTKLNRVLQSIGKGCFIEYFDKFNDPGYTNQDLVEMLMRDKGYTESGSKTRVSQSRRIIKENSVRDALNNIILSGNVSDSVRLGAKKILA 92          
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Match: A0A5C7KJ52_9RHOO (Uncharacterized protein n=1 Tax=Zoogloea sp. TaxID=49181 RepID=A0A5C7KJ52_9RHOO)

HSP 1 Score: 81.3 bits (199), Expect = 4.920e-18
Identity = 40/74 (54.05%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   34 LKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGSRTRVNQSRRIIREGRRDDALEHIAQSNRI 255
            + RSL+SIGMACFV+++  F D+ +SN   VD+L+R ++Y+ESGSRTRV+Q+RRIIR  R  +AL  +A + RI
Sbjct:    1 MNRSLQSIGMACFVKYFRHFNDTGLSNAQLVDLLIRDERYTESGSRTRVSQARRIIRNHRAREALHIVAHATRI 74          
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Match: V4PMQ9_9CAUL (Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 TaxID=1121022 RepID=V4PMQ9_9CAUL)

HSP 1 Score: 80.1 bits (196), Expect = 1.370e-17
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   19 MDDQQLKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGSRTRVNQSRRIIREGRRDDALEHIAQSNRIDSKWTGKAKSL 288
            M+D QL +SL+SIG +CFV+++E+F+D+++S+  A+  LM  + Y ++G+RTRV + RRII  GR  DAL+ IA +   DS    KA  L
Sbjct:    1 MEDHQLSKSLQSIGKSCFVKNFELFSDAAISDLDAMQFLMDDQGYEQTGARTRVREGRRIIESGRAKDALKIIADARLEDSTLADKAYRL 90          
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Match: A0A1Q4R2L1_9CYAN (Uncharacterized protein n=1 Tax=Limnothrix rosea IAM M-220 TaxID=454133 RepID=A0A1Q4R2L1_9CYAN)

HSP 1 Score: 74.7 bits (182), Expect = 1.910e-15
Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   19 MDDQQLKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGSRTRVNQSRRIIREGRRDDALEHIAQSNRIDSKWTGKAKSLL 291
            M+D QL +S++S+GM CFV+++E F+D S SN   V+ LM+ + Y+E+GSRTRV+++R+II +    DAL+ I +S + +     KA+ L+
Sbjct:    1 MNDDQLTKSIQSMGMGCFVKYFEAFSDLSKSNQDLVEALMKIEGYTENGSRTRVSRARQIIDKNFAMDALKIIIESKKTEPWIRAKAQYLI 91          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6492.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A3D4JEZ6_9CHLR8.520e-2348.94Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A549T2J8_METSR3.090e-2247.83Uncharacterized protein n=2 Tax=Methylocystaceae T... [more]
Q1N231_9GAMM4.030e-2248.89Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A8J6SQ61_9CYAN1.770e-2151.65Uncharacterized protein n=2 Tax=Pseudanabaenales T... [more]
A0A0P6XN87_9CHLR4.010e-2047.25Uncharacterized protein n=1 Tax=Levilinea saccharo... [more]
UPI0004812E073.930e-1943.00hypothetical protein n=1 Tax=Leptolyngbya sp. PCC ... [more]
UPI001430123A2.520e-1846.74hypothetical protein n=1 Tax=Maribellus sediminis ... [more]
A0A5C7KJ52_9RHOO4.920e-1854.05Uncharacterized protein n=1 Tax=Zoogloea sp. TaxID... [more]
V4PMQ9_9CAUL1.370e-1745.56Uncharacterized protein n=1 Tax=Asticcacaulis bene... [more]
A0A1Q4R2L1_9CYAN1.910e-1542.86Uncharacterized protein n=1 Tax=Limnothrix rosea I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6492contigP-wetherbeei_contig6492:3084..3389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1006000.GKAS_03860
Model size306
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.2e-08
EggNOG OGs2AUQT@1|root,31KDR@2|Bacteria,1RJ52@1224|Proteobacteria,1S8CR@1236|Gammaproteobacteria
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.459232-UTR-P-wetherbeei_contig6492:3083..31011683186917.459232-UTR-P-wetherbeei_contig6492:3083..3101Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6492 3084..3101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.4727902-CDS-P-wetherbeei_contig6492:3101..33891683186917.4727902-CDS-P-wetherbeei_contig6492:3101..3389Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6492 3102..3389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6492.3.1prot_P-wetherbeei_contig6492.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6492 3102..3389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6492.3.1

>prot_P-wetherbeei_contig6492.3.1 ID=prot_P-wetherbeei_contig6492.3.1|Name=mRNA_P-wetherbeei_contig6492.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
MDDQQLKRSLRSIGMACFVEHYEMFTDSSVSNDTAVDILMRQKKYSESGS
RTRVNQSRRIIREGRRDDALEHIAQSNRIDSKWTGKAKSLLAANK*
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mRNA from alignment at P-wetherbeei_contig6492:3084..3389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6492.3.1 ID=mRNA_P-wetherbeei_contig6492.3.1|Name=mRNA_P-wetherbeei_contig6492.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig6492:3084..3389+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCACAAAGCAAACATAATGGATGACCAGCAATTAAAGAGAAGCCTGAG GTCGATAGGCATGGCATGTTTTGTAGAACATTATGAGATGTTTACCGATT CCTCAGTTTCAAACGACACTGCTGTCGATATTCTGATGAGACAAAAAAAA TATTCTGAATCCGGCAGCCGCACCAGGGTCAATCAGTCAAGACGCATTAT TCGCGAAGGTCGCCGGGATGATGCTTTGGAACACATTGCCCAATCAAACA GGATAGACAGCAAGTGGACAGGCAAGGCAAAAAGCCTTCTGGCCGCTAAT AAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6492:3084..3389+

>mRNA_P-wetherbeei_contig6492.3.1 ID=mRNA_P-wetherbeei_contig6492.3.1|Name=mRNA_P-wetherbeei_contig6492.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig6492:3084..3389+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGACCAGCAATTAAAGAGAAGCCTGAGGTCGATAGGCATGGCATG
TTTTGTAGAACATTATGAGATGTTTACCGATTCCTCAGTTTCAAACGACA
CTGCTGTCGATATTCTGATGAGACAAAAAAAATATTCTGAATCCGGCAGC
CGCACCAGGGTCAATCAGTCAAGACGCATTATTCGCGAAGGTCGCCGGGA
TGATGCTTTGGAACACATTGCCCAATCAAACAGGATAGACAGCAAGTGGA
CAGGCAAGGCAAAAAGCCTTCTGGCCGCTAATAAATAG
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