mRNA_P-wetherbeei_contig649.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig649.3.1
Unique NamemRNA_P-wetherbeei_contig649.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig649.3.1 vs. uniprot
Match: A0A6H5L6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.380e-21
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 1 
Query: 1294 PLIEKELDAKIKEVQAVLGGPGAENGLGDGFVGACLAGMGFSVEAVVGAILEDSLPPHLARLDRGLQKAWRGKRGDNDRGYAAADGEERAALKEQLRASEREAEKDAYILLREYGDD 1644
            P   +EL+  +K VQAVLGG G   GLG+GFV ACL+ +G+S + V+ A+LED LPP +A L+RGL++AW+GK+GD D+ Y   D +  AA  ++L A E+  E DAY+L REY DD
Sbjct:  337 PRDPEELEEMVKSVQAVLGGTGEPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGLRRAWKGKKGDLDKAYRV-DKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDD 452
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BLAST of mRNA_P-wetherbeei_contig649.3.1 vs. uniprot
Match: A0A4D9DC10_9STRA (CUE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC10_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.810e-6
Identity = 52/129 (40.31%), Postives = 71/129 (55.04%), Query Frame = 1 
Query: 1270 GAEQARAAPLIEKELDAKIKEVQAVLGGPGAENGLGDGFVGACLAGMGFSVEAVVGAILEDS-LPPHLARLDRGLQK---AWRGKRGDNDRGYAAADGEERAALKEQLRASEREAEKDAYILLREYGDD 1644
            G E  R      + ++A ++EV+ V        GLG+GFV ACLA MG+++  VV A+LE S LP  L  LDR L     A + ++   +    A D E  A  K  LR  E++AE+DAY LL+EY DD
Sbjct:  406 GGEGERRVQRPARSVEAMVQEVRQVC------PGLGEGFVHACLAVMGYNINMVVNALLEGSALPYPLDTLDRSLPSPLGADKLRKKGREEAEEARDEEFIARQKAYLRQMEKDAEEDAY-LLQEYDDD 527
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig649.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6J2_9PHAE1.380e-2151.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DC10_9STRA5.810e-640.31CUE domain-containing protein n=2 Tax=Monodopsidac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig649contigP-wetherbeei_contig649:2597..5987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2181
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-23_002680.1
Cds size2145
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig649.3.1prot_P-wetherbeei_contig649.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig649 2633..5987 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.256507-UTR-P-wetherbeei_contig649:2596..26321683186917.256507-UTR-P-wetherbeei_contig649:2596..2632Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig649 2597..2632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.2729342-CDS-P-wetherbeei_contig649:2632..31241683186917.2729342-CDS-P-wetherbeei_contig649:2632..3124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig649 2633..3124 +
1683186917.2840648-CDS-P-wetherbeei_contig649:3359..36081683186917.2840648-CDS-P-wetherbeei_contig649:3359..3608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig649 3360..3608 +
1683186917.2959929-CDS-P-wetherbeei_contig649:3870..40421683186917.2959929-CDS-P-wetherbeei_contig649:3870..4042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig649 3871..4042 +
1683186917.3063579-CDS-P-wetherbeei_contig649:4391..47651683186917.3063579-CDS-P-wetherbeei_contig649:4391..4765Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig649 4392..4765 +
1683186917.316537-CDS-P-wetherbeei_contig649:4941..51241683186917.316537-CDS-P-wetherbeei_contig649:4941..5124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig649 4942..5124 +
1683186917.325938-CDS-P-wetherbeei_contig649:5312..59871683186917.325938-CDS-P-wetherbeei_contig649:5312..5987Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig649 5313..5987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig649.3.1

>prot_P-wetherbeei_contig649.3.1 ID=prot_P-wetherbeei_contig649.3.1|Name=mRNA_P-wetherbeei_contig649.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=715bp
MNRKTASQHGGPAAAAGSGKLLPAISEAFASLLQAANSVFLQRLESTDLS
LFLRSFLAKRGRVSSRSEPTTSDDEPSLQILGRHVLLVICRLAVQAPSAP
SLQKTGLFTAASLLDLCALYTAANAAVVGRLVDAVLRTLGDAVVTDMERT
VPSILDFIRDASGKISTGQRGSGSGVRPSEFEALLSLEDAVGAVAALLGC
SFAASTHFGPLFQPPSMDATDEAGLAAVLSEVLWAVAPMRRSPKSAQQLN
ADAKAAAARARHTCRSIERAATFCLHSLLLGVFGMPAASEDGARAGDGRA
LFRSEEFFSFIVGLAEDGGEGSGGSGGCSPLLEQYCRRYDLWGRLAALGE
EEILENAQVVYLLELLPDSSQTRKGRRAGRRRKRAGRSAATAATGADVGR
SAGAVSPPPLGGAEQARAAPLIEKELDAKIKEVQAVLGGPGAENGLGDGF
VGACLAGMGFSVEAVVGAILEDSLPPHLARLDRGLQKAWRGKRGDNDRGY
AAADGEERAALKEQLRASEREAEKDAYILLREYGDDYDDTYDDYGGVVGP
TGGGAADGVGGARVGSGVGGGAGSGIGGGGGGGLTDAASALRYNRLVRAE
ENEAAFWQANRNLNRRGMPAGGGSDNGEGGDGEEVDGGDSGSGGTAESRG
TVPGYRGGPAPASSRDGGRGGDGRGGGGGRGGGSGGRGGSGRGGGGGHGR
SGGSRGGGGRGGEAG
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mRNA from alignment at P-wetherbeei_contig649:2597..5987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig649.3.1 ID=mRNA_P-wetherbeei_contig649.3.1|Name=mRNA_P-wetherbeei_contig649.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3391bp|location=Sequence derived from alignment at P-wetherbeei_contig649:2597..5987+ (Phaeothamnion wetherbeei SAG_119_79)
GGATGAGGAGGAACGCAGAGTGTCCTGTGCATTGAAATGAATAGAAAGAC
GGCCAGTCAACACGGTGGACCGGCTGCTGCCGCAGGCAGCGGAAAACTGC
TTCCTGCGATAAGTGAAGCCTTCGCTTCTCTTTTGCAAGCGGCAAATAGC
GTCTTCCTTCAGCGTCTAGAATCGACGGACCTGTCGCTGTTCCTGCGGAG
CTTCCTTGCGAAACGGGGACGCGTATCCAGCAGGAGCGAGCCGACAACGA
GCGACGACGAACCATCATTGCAGATACTGGGGAGACACGTCCTCTTAGTG
ATCTGCCGCCTGGCTGTGCAGGCACCGAGCGCGCCTTCGCTCCAAAAAAC
GGGCCTTTTCACTGCCGCGTCCCTCCTGGACCTCTGCGCCCTGTATACTG
CCGCAAATGCGGCCGTGGTGGGGCGTTTGGTCGACGCCGTTCTTCGCACG
CTCGGCGATGCAGTGGTGACGGACATGGAGCGCACGGTCCCCAGCATTTT
GGACTTCATTCGAGACGCCAGCGGAAAGGTGACAGACGCATCGTTGTCGT
CGTTGCAAATTGCAATACTAAGCCAGTCCTTTCCATTTTGCTGCAGAAAA
TAGAATCCCGGGGGAAGTGCTTGGTCGCAGATAGAAACGGCCAGATTCAC
GATTGAGCTTTTCGTTTACCATCTGTTCTATGTCGGACGATATTATTGCG
GGCGTGGCGATTCTCATGGGGAAGTATCTTCTGCGTCTCGTACCGCTCTC
ACTCCGCGATCAGATTTCCACCGGTCAGCGGGGGAGCGGCAGCGGAGTAC
GCCCGTCGGAATTCGAGGCCCTATTGTCGCTGGAAGATGCCGTCGGCGCC
GTGGCGGCACTCCTCGGCTGCTCGTTCGCCGCCTCCACGCACTTCGGCCC
GCTCTTCCAGCCGCCCTCGATGGACGCAACGGACGAGGCCGGCCTCGCCG
CAGTGCTTTCGGAGGTGTTGTGGGCGGTGGCGCCGATGCGAAGAAGTCCA
AAGTCGGCGCAGGTGAGTAGAACGATTGTGTTTTGGGTGGTAGACCTTTA
TTTGGGCAAGGCACATTGTGCTAGTATTGGCTTTGGCTTCGGCGAGTTGC
CGCATCGCAGTGCGGTTGCGGGGCTCTTCCTTAAAGGACGAGAATCCGTT
TCTGCGCCTGGCAGCGGTGCTGCCGCTGCCTTTCTCCCTGATGTAGTAGG
TCTCGTGTGCTGTCTACACCTGCTGGCTCATCGTCGCCTTTCTTCTCATT
CGCATCGCCGGCGCTGCTCCACAGCAACTGAACGCTGACGCGAAGGCTGC
GGCGGCCCGGGCGCGACACACCTGCCGGAGCATTGAGCGGGCTGCGACTT
TCTGCCTCCATTCCCTGCTCCTGGGCGTCTTTGGCATGCCAGCCGCATCG
GAGGATGGAGCGCGGGCTGGCGACGGAAGAGCGCTGTTTCGATCAGGTGA
ATGGCAGGCGAAGAGCACGCGCTTTCCATGGCGTGCGCGTATTCTGTCGT
TCGCGTGTTCCTCTCTGCGATGTCTCTTCTCCTTGCAGTTTTGCGGCTTG
TGCACGTGCAATGGCCGTAAACGAAGCGGTGGGAAAGGCTTGGTTCGTTC
CCAGTCGTGGGAGATCGACCTGCCGTTTCCTTTTCCCCTGCTGCTGCTGC
GGGCATGCCTCTATTTCCCTAGCCGATGCAAATAGCTCAAGGAGGGGACG
AAGTATAGCTTTACACAGAATATGATCGCACTGATGTGTATCCTTCCGCT
TTTTCACGCTGCTACTGCTTTCCCTTTCATGTCCGCGCCCGCCAGAGGAA
TTCTTTTCCTTCATCGTCGGCTTGGCCGAAGATGGTGGTGAAGGCAGCGG
CGGCAGTGGCGGCTGCTCCCCGCTCTTGGAGCAGTACTGTCGTCGCTACG
ACTTGTGGGGCCGGCTCGCGGCTCTGGGAGAGGAGGAGATTCTTGAGAAT
GCTCAGGTCGTGTACCTGCTGGAGCTGCTGCCGGATTCATCGCAGACTCG
CAAGGGACGTCGAGCAGGACGGAGGCGGAAGAGGGCCGGCCGATCGGCCG
CCACAGCCGCTACCGGCGCGGATGTCGGCAGGAGCGCTGGGGCAGTGTCG
CCGCCGCCGCTTGGCGGGGCGGAGCAGGCACGGGCCGCGCCCTTGATCGA
GAAGGAGTTGGACGCAAAGGTGAGAAACGTACTTCCGGGCCGGTTTTGAA
GGTGTTGGTAGCCGCCGTCCCGCCCCGTGTGCGCTTCGCATCCATCCAGC
CCCAAGCCTGCGGTAACCTTTTCCTCTTTCCCCTCTCTTCTATCTCTTCC
TCCTTCGCTTCCGCCTCCGCCTCCGCCCTTCTTCCGCCCCGGCAGATCAA
GGAGGTGCAGGCCGTGCTGGGCGGTCCCGGCGCGGAGAACGGCCTCGGCG
ATGGCTTCGTGGGGGCGTGCCTCGCCGGCATGGGCTTCTCGGTCGAGGCT
GTTGTTGGAGCCATCCTGGAGGACAGCCTGCCGCCGCACCTGGCGCGCCT
CGACCGCGGCCTGCAGAAGGCGTGGAGGGTGAGTTGGGCCGAGGCAGTGA
GCGGTCCGTGAGCGGGGGGTGATGTTACTCTACTTGCACTGGAAGAAAGA
AGCTGGATCGCGCAATGCCTCCCTTCGGCTGCTTTCGCATGTTTCGTTCC
AGTCAGCCTGCCTTGAACTTCAGCCAAAGCTCACTGCAGAATTTCACTTT
TCCTTCACCGAAACAGGGCAAGCGGGGCGATAACGACCGCGGCTACGCGG
CGGCGGACGGCGAGGAGCGGGCGGCGCTGAAGGAGCAGCTGCGAGCGTCG
GAGCGCGAAGCCGAAAAGGACGCCTACATTCTGCTGCGCGAATACGGCGA
TGATTACGACGACACGTACGACGATTATGGTGGCGTCGTCGGCCCGACCG
GCGGCGGTGCAGCCGACGGCGTCGGCGGCGCGCGGGTCGGCAGCGGGGTC
GGCGGCGGCGCTGGTAGCGGCATTGGCGGCGGTGGCGGCGGCGGACTGAC
GGACGCTGCGTCAGCGTTGCGGTACAACCGGCTGGTGCGGGCGGAGGAGA
ATGAGGCTGCGTTCTGGCAGGCCAATCGGAACCTCAACCGCCGCGGTATG
CCGGCTGGAGGCGGCAGCGACAACGGCGAGGGCGGCGACGGGGAAGAGGT
AGATGGCGGTGACAGCGGCAGCGGTGGTACCGCTGAGAGCAGGGGCACTG
TGCCAGGTTACCGCGGAGGCCCGGCACCTGCCAGTAGCAGAGACGGGGGC
CGCGGAGGCGACGGAAGAGGCGGCGGCGGCGGCCGAGGCGGTGGCAGCGG
CGGTCGTGGCGGCAGCGGTCGTGGCGGCGGTGGCGGCCATGGCCGCAGCG
GCGGCAGCAGGGGCGGCGGTGGGAGAGGTGGCGAGGCGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig649:2597..5987+

>mRNA_P-wetherbeei_contig649.3.1 ID=mRNA_P-wetherbeei_contig649.3.1|Name=mRNA_P-wetherbeei_contig649.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2145bp|location=Sequence derived from alignment at P-wetherbeei_contig649:2597..5987+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATAGAAAGACGGCCAGTCAACACGGTGGACCGGCTGCTGCCGCAGG
CAGCGGAAAACTGCTTCCTGCGATAAGTGAAGCCTTCGCTTCTCTTTTGC
AAGCGGCAAATAGCGTCTTCCTTCAGCGTCTAGAATCGACGGACCTGTCG
CTGTTCCTGCGGAGCTTCCTTGCGAAACGGGGACGCGTATCCAGCAGGAG
CGAGCCGACAACGAGCGACGACGAACCATCATTGCAGATACTGGGGAGAC
ACGTCCTCTTAGTGATCTGCCGCCTGGCTGTGCAGGCACCGAGCGCGCCT
TCGCTCCAAAAAACGGGCCTTTTCACTGCCGCGTCCCTCCTGGACCTCTG
CGCCCTGTATACTGCCGCAAATGCGGCCGTGGTGGGGCGTTTGGTCGACG
CCGTTCTTCGCACGCTCGGCGATGCAGTGGTGACGGACATGGAGCGCACG
GTCCCCAGCATTTTGGACTTCATTCGAGACGCCAGCGGAAAGATTTCCAC
CGGTCAGCGGGGGAGCGGCAGCGGAGTACGCCCGTCGGAATTCGAGGCCC
TATTGTCGCTGGAAGATGCCGTCGGCGCCGTGGCGGCACTCCTCGGCTGC
TCGTTCGCCGCCTCCACGCACTTCGGCCCGCTCTTCCAGCCGCCCTCGAT
GGACGCAACGGACGAGGCCGGCCTCGCCGCAGTGCTTTCGGAGGTGTTGT
GGGCGGTGGCGCCGATGCGAAGAAGTCCAAAGTCGGCGCAGCAACTGAAC
GCTGACGCGAAGGCTGCGGCGGCCCGGGCGCGACACACCTGCCGGAGCAT
TGAGCGGGCTGCGACTTTCTGCCTCCATTCCCTGCTCCTGGGCGTCTTTG
GCATGCCAGCCGCATCGGAGGATGGAGCGCGGGCTGGCGACGGAAGAGCG
CTGTTTCGATCAGAGGAATTCTTTTCCTTCATCGTCGGCTTGGCCGAAGA
TGGTGGTGAAGGCAGCGGCGGCAGTGGCGGCTGCTCCCCGCTCTTGGAGC
AGTACTGTCGTCGCTACGACTTGTGGGGCCGGCTCGCGGCTCTGGGAGAG
GAGGAGATTCTTGAGAATGCTCAGGTCGTGTACCTGCTGGAGCTGCTGCC
GGATTCATCGCAGACTCGCAAGGGACGTCGAGCAGGACGGAGGCGGAAGA
GGGCCGGCCGATCGGCCGCCACAGCCGCTACCGGCGCGGATGTCGGCAGG
AGCGCTGGGGCAGTGTCGCCGCCGCCGCTTGGCGGGGCGGAGCAGGCACG
GGCCGCGCCCTTGATCGAGAAGGAGTTGGACGCAAAGATCAAGGAGGTGC
AGGCCGTGCTGGGCGGTCCCGGCGCGGAGAACGGCCTCGGCGATGGCTTC
GTGGGGGCGTGCCTCGCCGGCATGGGCTTCTCGGTCGAGGCTGTTGTTGG
AGCCATCCTGGAGGACAGCCTGCCGCCGCACCTGGCGCGCCTCGACCGCG
GCCTGCAGAAGGCGTGGAGGGGCAAGCGGGGCGATAACGACCGCGGCTAC
GCGGCGGCGGACGGCGAGGAGCGGGCGGCGCTGAAGGAGCAGCTGCGAGC
GTCGGAGCGCGAAGCCGAAAAGGACGCCTACATTCTGCTGCGCGAATACG
GCGATGATTACGACGACACGTACGACGATTATGGTGGCGTCGTCGGCCCG
ACCGGCGGCGGTGCAGCCGACGGCGTCGGCGGCGCGCGGGTCGGCAGCGG
GGTCGGCGGCGGCGCTGGTAGCGGCATTGGCGGCGGTGGCGGCGGCGGAC
TGACGGACGCTGCGTCAGCGTTGCGGTACAACCGGCTGGTGCGGGCGGAG
GAGAATGAGGCTGCGTTCTGGCAGGCCAATCGGAACCTCAACCGCCGCGG
TATGCCGGCTGGAGGCGGCAGCGACAACGGCGAGGGCGGCGACGGGGAAG
AGGTAGATGGCGGTGACAGCGGCAGCGGTGGTACCGCTGAGAGCAGGGGC
ACTGTGCCAGGTTACCGCGGAGGCCCGGCACCTGCCAGTAGCAGAGACGG
GGGCCGCGGAGGCGACGGAAGAGGCGGCGGCGGCGGCCGAGGCGGTGGCA
GCGGCGGTCGTGGCGGCAGCGGTCGTGGCGGCGGTGGCGGCCATGGCCGC
AGCGGCGGCAGCAGGGGCGGCGGTGGGAGAGGTGGCGAGGCGGGC
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