mRNA_P-wetherbeei_contig649.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig649.1.2
Unique NamemRNA_P-wetherbeei_contig649.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Match: A0A835ZKI1_9STRA (ORMDL family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.110e-49
Identity = 77/98 (78.57%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:  220 TFSFFHWIKGSPDEFSQGEWNGLTFWEQLDAGLPWTPTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVLVVGKLPIMHRVRIMSINTTAGVDD 513
            TF FFHWIKGSPDEF+QGEWNGLTFWEQLDAGLPWTPTKKFLMLVPA+LCL P + +DYD +Y+AVN+P+F++L   KLP MHRVRIMSIN TAG+DD
Sbjct:   84 TFLFFHWIKGSPDEFTQGEWNGLTFWEQLDAGLPWTPTKKFLMLVPALLCLPPLLASDYDSFYVAVNLPIFLILETAKLPSMHRVRIMSINATAGIDD 181
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BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Match: D7FKJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ6_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 3.050e-46
Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 1 
Query:  220 TFSFFHWIKGSPDEFSQGEWNGLTFWEQLDAGLPWTPTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVLVVGKLPIMHRVRIMSINTTAGVDDR 516
            TF FFHW KGSPDEF+QGEWNGLTFWEQLDAG+PWT TKKF+M+VP +LCLIP V++DY P YLAVN+PV  +L++ K P+MHRVRI+ IN T G+DDR
Sbjct:   83 TFYFFHWTKGSPDEFTQGEWNGLTFWEQLDAGVPWTKTKKFMMIVPTVLCLIPLVVSDYQPRYLAVNLPVCCILLLAKSPLMHRVRILDINATTGIDDR 181
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BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Match: A0A7S3MHK4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHK4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.580e-32
Identity = 56/98 (57.14%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:  220 TFSFFHWIKGSPDEFSQGEWNGLTFWEQLDAGLPWTPTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVLVVGKLPIMHRVRIMSINTTAGVDD 513
            TF   HWIKG PD+ +QGE+NGLT +EQ+DAG+PWT TKKFL+LVP +LCLI      Y P+Y+ VN  + ++ V+GK P MHRVRI  IN+T G+D+
Sbjct:   68 TFVMLHWIKGCPDDSTQGEYNGLTLFEQIDAGVPWTATKKFLILVPTLLCLIACFTASYKPFYIVVNCGIMLICVIGKFPQMHRVRIFGINSTPGIDN 165
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BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Match: A0A482T393_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T393_9ARCH)

HSP 1 Score: 121 bits (303), Expect = 6.460e-31
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  220 TFSFFHWIKGSPDEFSQGEWNGLTFWEQLDAGLPWTPTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVLVVGKLPIMHRVRIMSINTTAGVDD 513
            TF  FHWIKG PD+ +QGE+N  TF+EQLDAG+PWT  KKFLMLVP ++  I     DY P+Y+ VN  +F + ++ K+P MH VRI+ IN+T G+D+
Sbjct:    2 TFVVFHWIKGCPDDSTQGEYNAFTFYEQLDAGVPWTSQKKFLMLVPTVITWIACYAADYKPFYVIVNCVIFFICIIAKMPQMHGVRILGINSTPGIDN 99
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BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Match: W7TSM3_9STRA (Ormdl family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSM3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 8.240e-31
Identity = 63/117 (53.85%), Postives = 75/117 (64.10%), Query Frame = 1 
Query:  190 PYSLARELQAT--------FSFFHWIKGSPDEFSQGEWNGLTFWEQLDAGLPWTPTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVL-VVGKLPIMHRVRIMSINTTAGVDD 513
            P  L R L  T        F  FHWIKGSPD FSQGE+NGLT WEQ++ G+PWT TKK   LV   L    S +TDYD  YLA+N PV+V L ++ K+P MHRVR+   N TAG+DD
Sbjct:   60 PEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDD 176
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BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Match: A0A662WYE6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYE6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.460e-30
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:  220 TFSFFHWIKGSPDEFSQGEWNGLTFWEQLDAGLPWTPTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVLVVGKLPIMHRVRIMSINTTAGVDDRG 519
            +F   HWIKGSPD+ S G++  LTF+EQ+D G PWT TKKFLM++P +L L  SV TDYD  +L +N P++  L++ KLP + RVRI  IN+T G+DD+G
Sbjct:   23 SFGIMHWIKGSPDDNSMGDYRELTFYEQIDQGHPWTGTKKFLMMIPTLLFLAASVATDYDTRHLLINFPIWATLILAKLPELDRVRIFGINSTVGIDDQG 122
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BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Match: A0A2D4CH79_PYTIN (ORM1-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CH79_PYTIN)

HSP 1 Score: 119 bits (298), Expect = 1.370e-29
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:  220 TFSFFHWIKGSPDEFS-QGEWNGLTFWEQLDAGLPWTPTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVLVVGKLPIMHRVRIMSINTTAGVDD 513
            +FS  HWIKGSPD+ +  G++  LTF+EQ+D G PWTPTKKFLM++P  L +  SV TDYD  +L VN P++V L++ KLP + RVRI  IN+T G+DD
Sbjct:   55 SFSIMHWIKGSPDDTNAMGDYRELTFYEQIDEGRPWTPTKKFLMMIPTALFMAASVATDYDTTHLCVNFPIWVTLILAKLPELDRVRIFGINSTVGIDD 153
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BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Match: H3GS75_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GS75_PHYRM)

HSP 1 Score: 117 bits (294), Expect = 5.190e-29
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:  220 TFSFFHWIKGSPDEFSQGEWNGLTFWEQLDAGLPWTPTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVLVVGKLPIMHRVRIMSINTTAGVDD 513
            +F   HWIKGSPD+ S G++  LTF+EQ+D G PWT TKKFLM++P  L L  SV TDYD  +L +N P++  L++ KLP + RVRI  IN+T G+DD
Sbjct:   56 SFGIMHWIKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYDTRHLLINFPIWATLILAKLPELDRVRIFGINSTVGIDD 153
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BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Match: A0A0P1B7T6_PLAHL (Orm1-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7T6_PLAHL)

HSP 1 Score: 115 bits (289), Expect = 1.100e-28
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:  220 TFSFFHWIKGSPDEFSQGEWNGLTFWEQLDAGLPWTPTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVLVVGKLPIMHRVRIMSINTTAGVDD 513
            +F   HW+KGSPD+ S G++  LTF+EQ+D G PWT TKKFLM++P  L L  SV TDY+  +L VN P++  L++ KLP + RVRI  IN+T G+DD
Sbjct:   23 SFGIMHWVKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYNTRHLLVNFPIWATLILAKLPELDRVRIFGINSTVGIDD 120
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BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Match: K3WUL0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUL0_GLOUD)

HSP 1 Score: 115 bits (289), Expect = 1.600e-27
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:  220 TFSFFHWIKGSPDEF-SQGEWNGLTFWEQLDAGLPWTPTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVLVVGKLPIMHRVRIMSINTTAGVDD 513
            TF   HWIKGSPD+  S G++  LTF+EQ+D G PWT TKKFLM+VP  L ++  + TDYD  +L +N+P++ VL++ KLP + RVRI  IN+T G+DD
Sbjct:  116 TFGIMHWIKGSPDDSNSMGDYRELTFYEQIDQGHPWTGTKKFLMIVPTALFMLACIATDYDTVHLCINLPIWAVLILAKLPELDRVRIFGINSTVGIDD 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig649.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZKI1_9STRA1.110e-4978.57ORMDL family-domain-containing protein n=1 Tax=Tri... [more]
D7FKJ6_ECTSI3.050e-4671.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3MHK4_9STRA1.580e-3257.14Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482T393_9ARCH6.460e-3154.08Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W7TSM3_9STRA8.240e-3153.85Ormdl family protein n=2 Tax=Monodopsidaceae TaxID... [more]
A0A662WYE6_9STRA1.460e-3054.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A2D4CH79_PYTIN1.370e-2955.56ORM1-like protein n=1 Tax=Pythium insidiosum TaxID... [more]
H3GS75_PHYRM5.190e-2954.08Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
A0A0P1B7T6_PLAHL1.100e-2853.06Orm1-like protein n=1 Tax=Plasmopara halstedii Tax... [more]
K3WUL0_GLOUD1.600e-2753.54Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig649contigP-wetherbeei_contig649:967..2249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKJ6
Preferred nameORMDL3
PFAMsORMDL
Model size891
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002178,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006629,GO:0006643,GO:0006665,GO:0006672,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006986,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010556,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016192,GO:0017059,GO:0019216,GO:0019222,GO:0019725,GO:0030141,GO:0030176,GO:0030659,GO:0030667,GO:0031090,GO:0031211,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033554,GO:0034248,GO:0034249,GO:0034620,GO:0034641,GO:0035339,GO:0035579,GO:0035966,GO:0035967,GO:0036230,GO:0042119,GO:0042175,GO:0042221,GO:0042581,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043603,GO:0044087,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045833,GO:0046890,GO:0046903,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051716,GO:0055082,GO:0055088,GO:0060255,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071704,GO:0071944,GO:0080090,GO:0090153,GO:0090155,GO:0090156,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0099503,GO:1900060,GO:1901564,GO:1902494,GO:1905038,GO:1905961,GO:1990234,GO:2000303
Exons2
Evalue1.7e-48
EggNOG OGsCOG5081@1|root,KOG3319@2759|Eukaryota
Ec32 ortholog descriptionORMDL family
Ec32 orthologEc-12_001830.1
Descriptionnegative regulation of ceramide biosynthetic process
Cds size579
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.1961536-UTR-P-wetherbeei_contig649:966..12511683186917.1961536-UTR-P-wetherbeei_contig649:966..1251Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig649 967..1251 -
1683186917.226108-UTR-P-wetherbeei_contig649:2222..22491683186917.226108-UTR-P-wetherbeei_contig649:2222..2249Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig649 2223..2249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.2066023-CDS-P-wetherbeei_contig649:1251..14921683186917.2066023-CDS-P-wetherbeei_contig649:1251..1492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig649 1252..1492 -
1683186917.2158637-CDS-P-wetherbeei_contig649:1884..22221683186917.2158637-CDS-P-wetherbeei_contig649:1884..2222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig649 1885..2222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig649.1.2prot_P-wetherbeei_contig649.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig649 1252..2222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig649.1.2

>prot_P-wetherbeei_contig649.1.2 ID=prot_P-wetherbeei_contig649.1.2|Name=mRNA_P-wetherbeei_contig649.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
MTHLLTLAETMTAVNVLHGVVRRTTYAIPNLSPRLGQAPRAKIPLSRKAD
CNQTPYSLARELQATFSFFHWIKGSPDEFSQGEWNGLTFWEQLDAGLPWT
PTKKFLMLVPAILCLIPSVLTDYDPWYLAVNVPVFVVLVVGKLPIMHRVR
IMSINTTAGVDDRGAFCGAFSAPAAAVGVGKAGAALGRSKAD*
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mRNA from alignment at P-wetherbeei_contig649:967..2249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig649.1.2 ID=mRNA_P-wetherbeei_contig649.1.2|Name=mRNA_P-wetherbeei_contig649.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1283bp|location=Sequence derived from alignment at P-wetherbeei_contig649:967..2249- (Phaeothamnion wetherbeei SAG_119_79)
ATAGGGGCACTGGCGGTGGCACTGCACATGACACACCTGCTGACATTGGC
AGAAACCATGACTGCAGTCAACGTCCTACACGGCGTGGTGCGTCGTACCA
CCTATGCAATTCCTAATCTTTCGCCTCGCTTAGGGCAAGCACCGCGAGCC
AAAATTCCCCTTTCTCGCAAGGCTGATTGCAACCAAACGCCATATTCTCT
CGCCCGTGAGCTGCAGGCGACTTTCAGCTTCTTTCACTGGATTAAGGGAT
CCCCCGACGAATTCAGTCAAGGGGAGTGGAACGGACTGACGTTTTGGGAG
CAGCTGGACGCTGGACTGCCCTGGACACCAACAAAAAAGTTCCTGATGCT
CGTGCCGGCAATATTGTGAGTCCGCTGGTTTAGTGGGGGTTTTCTGTTCT
TCTTAATGGCGGCGATCATGTTGTCTTCAGAGCGGTTTGGTGGTTGATAA
TCGCTTATACGTGTTGCGCCTCGCTCACTCCGCTATCGGGAAGGCTCTGC
TTCGGAATGTGCTACTTGATGTTTTGTTGTGATGATATGTGCTATAGAAG
AGGATTTGAGCAGTCGGTTGCTTTTTTGGTGCCAGAATGCTCATGTGCGG
CTGGACCTTTGATTGGCGCTCCCTCCGACGGCAGAATAATTCCGTTCTTT
CACTTTCTTCCTATCCCTGCGAGCTGCGCTTTTCACTGCCTGCCTGTGAT
AAGACGACCCTGTTACATGCCGTCCTTGTCATCCCGAAACAAAACCGAAA
CCACCAGGTGCCTAATCCCGTCGGTGCTGACGGACTACGACCCGTGGTAC
TTGGCGGTGAACGTGCCCGTGTTCGTGGTTCTCGTGGTGGGCAAGCTGCC
CATCATGCACCGGGTCCGGATAATGTCCATCAACACCACCGCCGGTGTTG
ACGACCGGGGCGCCTTCTGCGGCGCCTTTTCCGCGCCCGCGGCTGCCGTC
GGAGTCGGGAAAGCCGGCGCGGCGTTGGGCCGTTCCAAGGCGGACTAGGC
CACTGTCGCGGCGCTACTGCTTTTTGTGCAGCGGCACGAGGGGTTGCCGG
GGAAGGACAGGGTTGGGAGAGGAGGCCTCGTAAAGGGAAACGTGGGGCTG
TAAATACGCGTTGTGGTTGGTGGAGGCGAAGCGCCTAGCTCGTCGGCAGC
GGCGAGCGCTTTGCTTTGATTGCCAATCTCGGGGCTTTGTACATCAAAGG
ATGCATGAAAGGAGGGATTCTGATTTTTGAAGTCCTGCTGCGAATCGGTC
GTCTTTTGTTTAATGCGACACCACAATCCCCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig649:967..2249-

>mRNA_P-wetherbeei_contig649.1.2 ID=mRNA_P-wetherbeei_contig649.1.2|Name=mRNA_P-wetherbeei_contig649.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig649:967..2249- (Phaeothamnion wetherbeei SAG_119_79)
ATGACACACCTGCTGACATTGGCAGAAACCATGACTGCAGTCAACGTCCT
ACACGGCGTGGTGCGTCGTACCACCTATGCAATTCCTAATCTTTCGCCTC
GCTTAGGGCAAGCACCGCGAGCCAAAATTCCCCTTTCTCGCAAGGCTGAT
TGCAACCAAACGCCATATTCTCTCGCCCGTGAGCTGCAGGCGACTTTCAG
CTTCTTTCACTGGATTAAGGGATCCCCCGACGAATTCAGTCAAGGGGAGT
GGAACGGACTGACGTTTTGGGAGCAGCTGGACGCTGGACTGCCCTGGACA
CCAACAAAAAAGTTCCTGATGCTCGTGCCGGCAATATTGTGCCTAATCCC
GTCGGTGCTGACGGACTACGACCCGTGGTACTTGGCGGTGAACGTGCCCG
TGTTCGTGGTTCTCGTGGTGGGCAAGCTGCCCATCATGCACCGGGTCCGG
ATAATGTCCATCAACACCACCGCCGGTGTTGACGACCGGGGCGCCTTCTG
CGGCGCCTTTTCCGCGCCCGCGGCTGCCGTCGGAGTCGGGAAAGCCGGCG
CGGCGTTGGGCCGTTCCAAGGCGGACTAG
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