mRNA_P-wetherbeei_contig6485.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6485.1.1
Unique NamemRNA_P-wetherbeei_contig6485.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6485.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6485contigP-wetherbeei_contig6485:153..1415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1000
Hectar predicted targeting categoryother localisation
Exons2
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.8977685-UTR-P-wetherbeei_contig6485:152..1651683186916.8977685-UTR-P-wetherbeei_contig6485:152..165Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6485 153..165 +
1683186916.9295945-UTR-P-wetherbeei_contig6485:941..14151683186916.9295945-UTR-P-wetherbeei_contig6485:941..1415Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6485 942..1415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.9094625-CDS-P-wetherbeei_contig6485:165..3911683186916.9094625-CDS-P-wetherbeei_contig6485:165..391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6485 166..391 +
1683186916.919605-CDS-P-wetherbeei_contig6485:654..9411683186916.919605-CDS-P-wetherbeei_contig6485:654..941Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6485 655..941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6485.1.1prot_P-wetherbeei_contig6485.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6485 166..941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6485.1.1

>prot_P-wetherbeei_contig6485.1.1 ID=prot_P-wetherbeei_contig6485.1.1|Name=mRNA_P-wetherbeei_contig6485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MPALVRLEVQPDADIPIARDAGATTLSALGRWAQSARCRACGTCCWGRSR
RRRPGRRRCSRRGGKWGDRWPMSRSGRSWRWRSRRQAASSCRCPRDGGAV
SRGGATATVPSASARNERPRIPRRIGVLKPPLWTMKGCFSDVRSTAAAGV
CSSLACRDGMGGALAGQLPT*
back to top

mRNA from alignment at P-wetherbeei_contig6485:153..1415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6485.1.1 ID=mRNA_P-wetherbeei_contig6485.1.1|Name=mRNA_P-wetherbeei_contig6485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1263bp|location=Sequence derived from alignment at P-wetherbeei_contig6485:153..1415+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGGCGGAGCACATGCCCGCCCTAGTGCGGCTGGAGGTGCAGCCGGACG
CCGACATCCCGATAGCACGCGATGCCGGAGCGACTACCCTGTCGGCCCTG
GGCCGTTGGGCGCAATCGGCGCGCTGCCGGGCCTGCGGGACCTGCTGCTG
GGGGCGATCGCGCCGACGAAGGCCGGGCCGCAGGCGCTGCTCGCGGCGAG
GCGGGAAGTGGGGCGACCGCTGGCCTATGTCGCGTTCCGGTGAGTCTAGG
AGTGGATTCCTCGTCGCCGTTCTGGTGCGCCTGACCGGACTGCCGTTGCA
AATTCTTCATTGAGGCAACCATTGCCGCTGCAGCTGCCGCAGCCTCCATT
GCTTTGGCCAAGAGTGACTAGCTCCAAGGCTGTGCTCATCTCTCTCCGCC
CGTTCCCTTTCTCCCGCCCGTTTCCTTAATTTGCCGCCGCCATGCGCTCG
TTTGCTCCTCCGCTTCCGCTCACTCGCTATTTGGCGCTGCCCTGGCCGTC
AGGACGCTCGTGGCGCTGGCGGAGTCGACGGCAGGCTGCGTCTTCGTGCA
GATGTCCAAGAGACGGCGGGGCGGTGTCTCGTGGCGGAGCGACCGCGACC
GTACCCTCGGCTTCGGCTCGTAACGAACGGCCTCGCATACCGCGGCGTAT
CGGCGTTCTGAAGCCGCCGCTTTGGACGATGAAGGGGTGCTTTTCCGACG
TGCGGAGCACTGCAGCAGCTGGGGTTTGCTCCTCGCTTGCGTGTCGGGAT
GGAATGGGCGGGGCGTTGGCAGGGCAGCTCCCTACCTAAGTGGAAGGACG
GCGTTCTACGTCTGAGTTCTGTATGCAAAGCTCGACGACGGCCAGTGGGA
CGGCAATCAGTGCTCGCCGCCGTTCACTGGCCTACCTGCCTGCCGGAAGC
AAGACAAGCGTCGACCGTGTGCGGTTACGGCCGGCTCTCCAGCGGCACCG
CTTCGCATACAAACGGAACGGTGCGATCGAACGGCCTACAGCCGATAGTT
CGTGCCGTTGCCGTCCGCAACAAAACGGCGTATTCCTCCGATCGTCGGCG
CTAGCACAGCTCGACAACCATCGCGGGTGGGTGTGATATTGGGTAGCCTA
GCGCGAAAGGCAAAACTCAATCAAAGAACAGTCGTTGGAGAACAAAGTTT
CTTGCAATTTTTGGTGCTCAGAGCTCAGAGGTTTCCTGTAAAAGATGTAA
AGGATAGCGCGCAATGGGCCTTCCTCCTTTTTCGGCGGCGAACTGTGACG
GCGTGACGGCTTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6485:153..1415+

>mRNA_P-wetherbeei_contig6485.1.1 ID=mRNA_P-wetherbeei_contig6485.1.1|Name=mRNA_P-wetherbeei_contig6485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig6485:153..1415+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGCCCTAGTGCGGCTGGAGGTGCAGCCGGACGCCGACATCCCGAT
AGCACGCGATGCCGGAGCGACTACCCTGTCGGCCCTGGGCCGTTGGGCGC
AATCGGCGCGCTGCCGGGCCTGCGGGACCTGCTGCTGGGGGCGATCGCGC
CGACGAAGGCCGGGCCGCAGGCGCTGCTCGCGGCGAGGCGGGAAGTGGGG
CGACCGCTGGCCTATGTCGCGTTCCGGACGCTCGTGGCGCTGGCGGAGTC
GACGGCAGGCTGCGTCTTCGTGCAGATGTCCAAGAGACGGCGGGGCGGTG
TCTCGTGGCGGAGCGACCGCGACCGTACCCTCGGCTTCGGCTCGTAACGA
ACGGCCTCGCATACCGCGGCGTATCGGCGTTCTGAAGCCGCCGCTTTGGA
CGATGAAGGGGTGCTTTTCCGACGTGCGGAGCACTGCAGCAGCTGGGGTT
TGCTCCTCGCTTGCGTGTCGGGATGGAATGGGCGGGGCGTTGGCAGGGCA
GCTCCCTACCTAA
back to top