mRNA_P-wetherbeei_contig6483.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6483.1.1
Unique NamemRNA_P-wetherbeei_contig6483.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6483.1.1 vs. uniprot
Match: A0A836CEB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEB4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.400e-18
Identity = 57/160 (35.62%), Postives = 85/160 (53.12%), Query Frame = 1 
Query:   85 QLLEALRQRFPPSVSNQRGYRTL----PTEAEAE------------TELRPHYTPLYSNQKNVRRRHLDSRAGYGKAGNGTKVCFFFSLSGVIFLSWIGTMLARSSPYVRLEEESLSKPQLARSVYGAASLYFIFMCLAAFRWYHSLVDYRSPTLDTE*P 516
            ++LE LR +  PSV N+ GY  L    P++A A+              L P YTP+Y+NQ  + R+ LD      + G   ++CF  S+ G +FLS +G ML+R++PY+   E  L   QL+ SVYGAA++Y + M    F    +    RSP  D++ P
Sbjct:    3 RILELLRLQQNPSVENEAGYARLNPHSPSDAPAQGFAAGEEGDETLRHLLPPYTPMYANQYQLERKALDEALHGQEPGCMLRLCFVVSICGFVFLSIVGRMLSRNTPYI---ETHLRGDQLSASVYGAAAMYMVSMFYCGFMLVKARCHRRSPLFDSDVP 159
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6483.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CEB4_9STRA8.400e-1835.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6483contigP-wetherbeei_contig6483:296..1809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size988
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002760.1
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.6776197-UTR-P-wetherbeei_contig6483:295..7701683186916.6776197-UTR-P-wetherbeei_contig6483:295..770Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6483 296..770 -
1683186916.7316625-UTR-P-wetherbeei_contig6483:1728..18091683186916.7316625-UTR-P-wetherbeei_contig6483:1728..1809Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6483 1729..1809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.6892438-CDS-P-wetherbeei_contig6483:770..8221683186916.6892438-CDS-P-wetherbeei_contig6483:770..822Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6483 771..822 -
1683186916.7095897-CDS-P-wetherbeei_contig6483:1159..13461683186916.7095897-CDS-P-wetherbeei_contig6483:1159..1346Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6483 1160..1346 -
1683186916.7223299-CDS-P-wetherbeei_contig6483:1535..17281683186916.7223299-CDS-P-wetherbeei_contig6483:1535..1728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6483 1536..1728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6483.1.1prot_P-wetherbeei_contig6483.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6483 771..1728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6483.1.1

>prot_P-wetherbeei_contig6483.1.1 ID=prot_P-wetherbeei_contig6483.1.1|Name=mRNA_P-wetherbeei_contig6483.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MQLLEALRQRFPPSVSNQRGYRTLPTEAEAETELRPHYTPLYSNQKNVRR
RHLDSRAGYGKAGNGTKVCFFFSLSGVIFLSWIGTMLARSSPYVRLEEES
LSKPQLARSVYGAASLYFIFMCLAAFRWYHSLVDYRSPTLDTE*
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mRNA from alignment at P-wetherbeei_contig6483:296..1809-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6483.1.1 ID=mRNA_P-wetherbeei_contig6483.1.1|Name=mRNA_P-wetherbeei_contig6483.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1514bp|location=Sequence derived from alignment at P-wetherbeei_contig6483:296..1809- (Phaeothamnion wetherbeei SAG_119_79)
CCGAACTATTCTTAACTTGGGAGGGTTGGCAATGCGTGTAACCAAACGTG
TCTCTTTACCTCCACCCTCTTCTACTTAGTTATGCAGCTCTTAGAAGCCC
TGCGACAACGCTTCCCGCCTAGCGTTAGTAATCAGAGGGGGTACAGGACA
TTACCGACGGAAGCAGAGGCCGAAACTGAGTTGAGACCGCACTATACGCC
ATTGTACAGCAACCAAAAGAACGTTCGACGACGGCACCTCGATTCGAGGG
CAGGCTACGGCAAAGCTGGGAACGGTACGTGTCAGTCAGATGCTCGCGAG
AAACGCTTGCCACCCTTTAGAATGCGCCAAAATGGCAGCTCGACGATGCG
CTGGAACTCCTGCAGCCGTACCGCGCATTCGTGTATACATTTGCAAGCTG
TTGAAAGCTTGTGCTTCGTTGATCCCCCCCCCCCCCCAAAAAAAACACAA
AATGGGTTCCCAGGCACGAAGGTCTGCTTCTTCTTCTCCCTCAGCGGGGT
CATCTTTTTATCGTGGATTGGGACGATGCTGGCACGGTCCTCGCCGTACG
TGCGGCTGGAGGAGGAGAGCTTGAGCAAACCGCAGCTTGCTCGGAGCGTC
TACGGAGCGGCATCTCTATACTTTATATTCATGTGCCTAGCGGCATTCAG
GTGAGAGCTTCGGCGAACGCTCCCAACCGTGCTTTAATTTTCGACGATTT
TTCGGATTCTGTTTGATGTCGTTAGAGCCGGCTGAAAGACCGTGCTTGGG
TGCCTGTGGCACTGAACCGCTGTGATGGCGATGCGATCGACTCGCACAAG
AAGAGTAGAAAGTTCTGGTTGGGCCTGCTTGTTTGTAAATCTGTTGCAGG
TTGGCTCTATTTGCCTCCAGTTCTTCTGCATCGGCACGCCTTTTTGGGCG
TTTCAGCAAATGGGCTCACTGCCTGGCGACGCCGCCGTCTCATCTTTCTT
GCTTGCGCGCATCGCACCATCCGGATATTGGTCGCAGGTGGTACCACAGC
CTGGTGGATTATCGATCGCCGACGCTGGACACAGAGTAGCCGCAACTGGC
AGCTGCAGCTACCGCCGCCGCGGTGGCGGCGGTGGCGGGCGATGGCGGCG
GGCGATGGTGGCGGCGGCGACGGCGGCCGCAGGTGGCCGCTGCGGGCGGG
AGGCCTTTTGGCCTTTGAGAAACGTTGGCTGGAGAAGCTGGCTGTGGCGT
TTGGAGCGCCACAGAATGCAGGGGACCCGCCCGGGCGAAAAGGGAAGTAC
ATAAACGTCCCCACTAGCCTGGCTGCCGCAAGCGGCTTCCTGCCCCTGGG
CGCTGGCGGTATGGCCATTTCCGCGGGCGCTGGCTGCAGAAAGCGCAGAA
AAACACATTTTCATATGCGGCGAGGGGAAGGAAGATGTTCGCTCCAAGGC
AGTACGTAAACTGTTAGCGTAAGTTCGGGAGCAACCAATGCCTCACAACA
CTTCACGTGCATTTCTAGGACGTCTGGGCTTCCAAGCGTGCATGACAAAG
AATGCCCCATCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6483:296..1809-

>mRNA_P-wetherbeei_contig6483.1.1 ID=mRNA_P-wetherbeei_contig6483.1.1|Name=mRNA_P-wetherbeei_contig6483.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig6483:296..1809- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCTCTTAGAAGCCCTGCGACAACGCTTCCCGCCTAGCGTTAGTAA
TCAGAGGGGGTACAGGACATTACCGACGGAAGCAGAGGCCGAAACTGAGT
TGAGACCGCACTATACGCCATTGTACAGCAACCAAAAGAACGTTCGACGA
CGGCACCTCGATTCGAGGGCAGGCTACGGCAAAGCTGGGAACGGCACGAA
GGTCTGCTTCTTCTTCTCCCTCAGCGGGGTCATCTTTTTATCGTGGATTG
GGACGATGCTGGCACGGTCCTCGCCGTACGTGCGGCTGGAGGAGGAGAGC
TTGAGCAAACCGCAGCTTGCTCGGAGCGTCTACGGAGCGGCATCTCTATA
CTTTATATTCATGTGCCTAGCGGCATTCAGGTGGTACCACAGCCTGGTGG
ATTATCGATCGCCGACGCTGGACACAGAGTAG
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