mRNA_P-wetherbeei_contig6483.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6483.2.1
Unique NamemRNA_P-wetherbeei_contig6483.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6483.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6483contigP-wetherbeei_contig6483:1823..3273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1453
Hectar predicted targeting categoryother localisation
Exons1
Cds size1149
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.6364095-UTR-P-wetherbeei_contig6483:1822..21241683186916.6364095-UTR-P-wetherbeei_contig6483:1822..2124Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6483 1823..2124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.6476822-CDS-P-wetherbeei_contig6483:2124..32731683186916.6476822-CDS-P-wetherbeei_contig6483:2124..3273Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6483 2125..3273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6483.2.1prot_P-wetherbeei_contig6483.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6483 2125..3273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6483.2.1

>prot_P-wetherbeei_contig6483.2.1 ID=prot_P-wetherbeei_contig6483.2.1|Name=mRNA_P-wetherbeei_contig6483.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=383bp
MMLPSEWPAEWLDDPSSMVAVSPSGSYLACGVSSRLVVLEGREKSKEKDG
TTGHCELPLPSGAAATALHFSMENLLVCGTADGVMLVFERISSGAWKLRL
SYVFHGGGGVLTAEVAPTTAARAATATVAISPPSGGQGGSHIAAAGRREK
RRKEPQPELQPRRCVAIKESVPRRGEHHHLWLLFDDGVVASVSWDGWLGS
GGAGCGGRNGGSGCGGSGDGGGGDGREEAGGKREAANARSAAALDGGDKA
AADLSAANAAATAGAAAAVANDGAAPTPLKDVDISYSRLKLRGQGAVRDF
AACPATATLFEESPGAATAGGSSGFSSSGGSGGSGGNPGRRATTLVAGGA
DPPLCLYHAGREARPAGLGQLAVLLANRVALGA
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mRNA from alignment at P-wetherbeei_contig6483:1823..3273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6483.2.1 ID=mRNA_P-wetherbeei_contig6483.2.1|Name=mRNA_P-wetherbeei_contig6483.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1451bp|location=Sequence derived from alignment at P-wetherbeei_contig6483:1823..3273+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGTGAACGCGAGAAAACGAGAGCACTATGGAGACTGCCTGCAGTCACG
AGACGTCGCTTTGACGTCCGGCAGTACTTGAAAGTGCGAAAGGGCTTTGG
CTGTTGTCGTAAAGGCCTTCTCTATTCTAATTTTTAACTTGCGTCGAAAG
AATGAGACGTTGCTCATCTGAACATGGCTCGAGCAATCGCGACGTCATTC
GAGCTTCCATGAATTTAATATCGACACTTCTCTCACCCCTTTCTCCTATG
CTGCCTTCAGAGCCAGAGCCCGACATTACCTGAGAACACGCCATGAAAAG
GGATGATGCTCCCGTCGGAGTGGCCGGCCGAATGGCTTGACGATCCTTCC
AGCATGGTAGCGGTTTCACCTAGTGGCAGTTATTTGGCGTGCGGGGTCTC
GTCACGCCTGGTAGTGCTAGAAGGGAGGGAGAAAAGTAAGGAGAAGGACG
GTACGACTGGTCATTGCGAGCTTCCGTTGCCCTCAGGAGCCGCGGCGACG
GCGCTTCACTTCAGCATGGAGAACCTCCTGGTCTGCGGGACGGCCGACGG
CGTCATGCTGGTCTTCGAGCGAATTTCCAGCGGCGCCTGGAAGCTCCGCC
TCTCGTACGTCTTCCACGGCGGCGGCGGCGTACTGACGGCGGAGGTAGCG
CCGACGACGGCGGCGAGGGCGGCCACGGCCACCGTGGCAATCTCGCCCCC
TTCCGGCGGCCAAGGTGGCAGTCATATAGCAGCGGCCGGGCGACGCGAGA
AGCGGCGGAAAGAGCCGCAACCCGAGCTCCAGCCCCGTCGGTGCGTCGCC
ATCAAAGAGTCCGTGCCGCGGCGCGGCGAACACCATCACCTCTGGTTGCT
CTTCGACGACGGCGTGGTGGCGTCCGTGTCGTGGGACGGCTGGCTCGGCA
GCGGCGGTGCCGGCTGCGGCGGCAGAAATGGCGGCAGCGGCTGTGGCGGC
AGCGGCGACGGCGGCGGCGGCGACGGCAGAGAAGAGGCGGGGGGAAAGAG
AGAGGCAGCCAACGCCAGGTCAGCAGCAGCCCTTGACGGCGGAGATAAGG
CTGCCGCCGACCTTTCCGCCGCAAACGCGGCCGCCACCGCCGGTGCCGCT
GCAGCAGTCGCCAATGACGGCGCGGCCCCTACCCCGCTCAAGGACGTGGA
CATCAGCTACTCGCGCCTGAAGCTGCGCGGGCAGGGCGCCGTCCGCGACT
TTGCTGCGTGCCCCGCCACCGCCACTCTATTCGAGGAGAGCCCCGGCGCT
GCTACCGCCGGCGGATCCAGCGGCTTCAGCAGCTCTGGCGGCTCTGGCGG
TTCCGGCGGCAATCCCGGCCGCCGCGCGACGACGCTTGTCGCCGGTGGTG
CGGACCCGCCGCTCTGCCTCTACCACGCCGGCCGCGAGGCGCGGCCGGCC
GGCCTCGGCCAGCTGGCGGTGCTCCTCGCCAACCGGGTGGCGCTCGGCGC
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6483:1823..3273+

>mRNA_P-wetherbeei_contig6483.2.1 ID=mRNA_P-wetherbeei_contig6483.2.1|Name=mRNA_P-wetherbeei_contig6483.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1149bp|location=Sequence derived from alignment at P-wetherbeei_contig6483:1823..3273+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCTCCCGTCGGAGTGGCCGGCCGAATGGCTTGACGATCCTTCCAG
CATGGTAGCGGTTTCACCTAGTGGCAGTTATTTGGCGTGCGGGGTCTCGT
CACGCCTGGTAGTGCTAGAAGGGAGGGAGAAAAGTAAGGAGAAGGACGGT
ACGACTGGTCATTGCGAGCTTCCGTTGCCCTCAGGAGCCGCGGCGACGGC
GCTTCACTTCAGCATGGAGAACCTCCTGGTCTGCGGGACGGCCGACGGCG
TCATGCTGGTCTTCGAGCGAATTTCCAGCGGCGCCTGGAAGCTCCGCCTC
TCGTACGTCTTCCACGGCGGCGGCGGCGTACTGACGGCGGAGGTAGCGCC
GACGACGGCGGCGAGGGCGGCCACGGCCACCGTGGCAATCTCGCCCCCTT
CCGGCGGCCAAGGTGGCAGTCATATAGCAGCGGCCGGGCGACGCGAGAAG
CGGCGGAAAGAGCCGCAACCCGAGCTCCAGCCCCGTCGGTGCGTCGCCAT
CAAAGAGTCCGTGCCGCGGCGCGGCGAACACCATCACCTCTGGTTGCTCT
TCGACGACGGCGTGGTGGCGTCCGTGTCGTGGGACGGCTGGCTCGGCAGC
GGCGGTGCCGGCTGCGGCGGCAGAAATGGCGGCAGCGGCTGTGGCGGCAG
CGGCGACGGCGGCGGCGGCGACGGCAGAGAAGAGGCGGGGGGAAAGAGAG
AGGCAGCCAACGCCAGGTCAGCAGCAGCCCTTGACGGCGGAGATAAGGCT
GCCGCCGACCTTTCCGCCGCAAACGCGGCCGCCACCGCCGGTGCCGCTGC
AGCAGTCGCCAATGACGGCGCGGCCCCTACCCCGCTCAAGGACGTGGACA
TCAGCTACTCGCGCCTGAAGCTGCGCGGGCAGGGCGCCGTCCGCGACTTT
GCTGCGTGCCCCGCCACCGCCACTCTATTCGAGGAGAGCCCCGGCGCTGC
TACCGCCGGCGGATCCAGCGGCTTCAGCAGCTCTGGCGGCTCTGGCGGTT
CCGGCGGCAATCCCGGCCGCCGCGCGACGACGCTTGTCGCCGGTGGTGCG
GACCCGCCGCTCTGCCTCTACCACGCCGGCCGCGAGGCGCGGCCGGCCGG
CCTCGGCCAGCTGGCGGTGCTCCTCGCCAACCGGGTGGCGCTCGGCGCC
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