mRNA_P-wetherbeei_contig6478.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6478.2.1
Unique NamemRNA_P-wetherbeei_contig6478.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A3C0TXD1_9PROT (DNA-binding protein HU n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXD1_9PROT)

HSP 1 Score: 149 bits (375), Expect = 4.690e-45
Identity = 75/90 (83.33%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 270
            +NKN+LIA++ADD++++KADA RAVDSIL+II K+LKK GEVRLVGFGTFSVVKRKASEGRNPRTGE IKIPASKQPKFKAGK+LKDAVN
Sbjct:    1 MNKNDLIASLADDMDISKADATRAVDSILKIIEKALKKGGEVRLVGFGTFSVVKRKASEGRNPRTGETIKIPASKQPKFKAGKSLKDAVN 90
[Close]
BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A3D5RTE7_9PROT (DNA-binding protein HU n=2 Tax=Bacteria TaxID=2 RepID=A0A3D5RTE7_9PROT)

HSP 1 Score: 137 bits (346), Expect = 1.280e-40
Identity = 73/90 (81.11%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 270
            +NKN+LIAAVAD   +TKADAA+AVDSILE IT SLKK  EVRLVGFGTFSV +R ASEGRNPRTGE IKIPASK+PKF AGKALKDAVN
Sbjct:    1 MNKNDLIAAVADSAGLTKADAAKAVDSILENITASLKKQNEVRLVGFGTFSVARRAASEGRNPRTGEKIKIPASKRPKFSAGKALKDAVN 90
[Close]
BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A352KEK0_9PROT (DNA-binding protein HU n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KEK0_9PROT)

HSP 1 Score: 134 bits (337), Expect = 2.930e-39
Identity = 68/90 (75.56%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 270
            +NKN+LIA+VA+  E++KADA +AVD++ + IT +LK  G+VRLVGFGTFSVVKRKASEGRNPRTGEAIKIPAS QPKFKAGK LKDAVN
Sbjct:    1 MNKNDLIASVAEAAELSKADATKAVDAVFDTITGTLKGGGDVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASNQPKFKAGKGLKDAVN 90
[Close]
BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A5J6MXB1_9PROT (Transcriptional regulator n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6MXB1_9PROT)

HSP 1 Score: 130 bits (328), Expect = 6.900e-38
Identity = 67/90 (74.44%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 270
            +NKN+LIA V+ +  ++K DAARAVD++ ++ITKSLKK  EVRLVGFGTF V KR ASEGRNPRTGE I+IPASKQPKFKAGKALKDAVN
Sbjct:    1 MNKNDLIADVSTETGLSKGDAARAVDAVFDVITKSLKKGTEVRLVGFGTFVVTKRAASEGRNPRTGEKIEIPASKQPKFKAGKALKDAVN 90
[Close]
BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A2S6QCP7_9PROT (DNA-binding protein HRm n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6QCP7_9PROT)

HSP 1 Score: 130 bits (327), Expect = 9.800e-38
Identity = 65/90 (72.22%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 270
            +NKN+L+AAVAD  +++KAD+A+AVD++ + IT +LK  G+VRLVGFGTFSV  RKAS GRNPRTGEAI+IPASKQPKFKAGK LKDAVN
Sbjct:    1 MNKNDLVAAVADGADLSKADSAKAVDAVFDSITGALKGGGDVRLVGFGTFSVANRKASTGRNPRTGEAIQIPASKQPKFKAGKGLKDAVN 90
[Close]
BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A2E8T7Y1_9PROT (DNA-binding protein HU n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E8T7Y1_9PROT)

HSP 1 Score: 130 bits (327), Expect = 9.800e-38
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 270
            +NKN+LI AVAD  ++T A A +AVDS++  IT SLKK  EVRLVGFGTFSV KRKAS+GRNPRTGE IKIPASKQPKFKAGKALK+AVN
Sbjct:    1 MNKNDLIKAVADSADLTNAQAGKAVDSVVGSITGSLKKGQEVRLVGFGTFSVAKRKASKGRNPRTGEEIKIPASKQPKFKAGKALKEAVN 90
[Close]
BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A3M1G088_9PROT (HU family DNA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1G088_9PROT)

HSP 1 Score: 130 bits (326), Expect = 1.430e-37
Identity = 66/90 (73.33%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 270
            +NKN+L+A VAD  +++KADAAR+VD++ E ITK+LKK  EVRLVGFGTF+V KR ASEGRNPRTGE IKI ASKQPKF+AGK LKDAVN
Sbjct:    1 MNKNDLVARVADASKLSKADAARSVDAVFETITKALKKGDEVRLVGFGTFAVTKRAASEGRNPRTGEKIKIKASKQPKFRAGKGLKDAVN 90
[Close]
BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A349TYA6_9PROT (DNA-binding protein HU n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A349TYA6_9PROT)

HSP 1 Score: 129 bits (325), Expect = 1.980e-37
Identity = 68/90 (75.56%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 270
            +NKNEL+A VA + ++TKADAARAV++I+E I+K+LKK  EVRLVGFGTF V KR ASEGRNPRTG  IKIPASKQPKFKAGKALKD VN
Sbjct:    1 MNKNELVAFVAKEADMTKADAARAVEAIVEGISKTLKKGDEVRLVGFGTFWVAKRAASEGRNPRTGAKIKIPASKQPKFKAGKALKDIVN 90
[Close]
BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: UPI0004189D3A (HU family DNA-binding protein n=2 Tax=Nisaea TaxID=390876 RepID=UPI0004189D3A)

HSP 1 Score: 129 bits (325), Expect = 1.980e-37
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 270
            +NKNEL+AAVAD  ++TKADAA AVD++L+ IT +LK   EVRLVGFGTFSV  R ASEGRNPRTGE I+I ASKQPKFKAGK LKDA+N
Sbjct:    1 MNKNELVAAVADSADITKADAASAVDAVLDSITSALKSGDEVRLVGFGTFSVASRAASEGRNPRTGEKIQIAASKQPKFKAGKGLKDALN 90
[Close]
BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A6A7KXD1_9PROT (DNA-binding protein HU n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KXD1_9PROT)

HSP 1 Score: 129 bits (324), Expect = 2.810e-37
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 270
            +NKN+L+A+VADD  ++K+DA RAVDS+ + I K+LKK  EVRLVGFGTFSV  RKAS GRNPRTGE I+IPASKQPKFKAGK LKDA+N
Sbjct:    1 MNKNDLVASVADDSGLSKSDATRAVDSVFDSIMKALKKGSEVRLVGFGTFSVSNRKASVGRNPRTGEQIQIPASKQPKFKAGKGLKDAIN 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TXD1_9PROT4.690e-4583.33DNA-binding protein HU n=1 Tax=Alphaproteobacteria... [more]
A0A3D5RTE7_9PROT1.280e-4081.11DNA-binding protein HU n=2 Tax=Bacteria TaxID=2 Re... [more]
A0A352KEK0_9PROT2.930e-3975.56DNA-binding protein HU n=1 Tax=Alphaproteobacteria... [more]
A0A5J6MXB1_9PROT6.900e-3874.44Transcriptional regulator n=2 Tax=Hypericibacter T... [more]
A0A2S6QCP7_9PROT9.800e-3872.22DNA-binding protein HRm n=5 Tax=Alphaproteobacteri... [more]
A0A2E8T7Y1_9PROT9.800e-3875.56DNA-binding protein HU n=2 Tax=Proteobacteria TaxI... [more]
A0A3M1G088_9PROT1.430e-3773.33HU family DNA-binding protein n=1 Tax=Alphaproteob... [more]
A0A349TYA6_9PROT1.980e-3775.56DNA-binding protein HU n=2 Tax=Alphaproteobacteria... [more]
UPI0004189D3A1.980e-3773.33HU family DNA-binding protein n=2 Tax=Nisaea TaxID... [more]
A0A6A7KXD1_9PROT2.810e-3772.22DNA-binding protein HU n=1 Tax=Alphaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6478contigP-wetherbeei_contig6478:1216..1488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380391.JIAS01000003_gene1847
PFAMsBac_DNA_binding
Model size273
Max annot lvl204441|Rhodospirillales
KEGG koko:K03530
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.61e-38
EggNOG OGsCOG0776@1|root,COG0776@2|Bacteria,1MZ5B@1224|Proteobacteria,2UC5G@28211|Alphaproteobacteria,2JTCN@204441|Rhodospirillales
DescriptionHistone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
Cds size273
COG categoryL
BRITEko00000,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.2092426-CDS-P-wetherbeei_contig6478:1215..14881683186916.2092426-CDS-P-wetherbeei_contig6478:1215..1488Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6478 1216..1488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6478.2.1prot_P-wetherbeei_contig6478.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6478 1216..1488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6478.2.1

>prot_P-wetherbeei_contig6478.2.1 ID=prot_P-wetherbeei_contig6478.2.1|Name=mRNA_P-wetherbeei_contig6478.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTF
SVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN*
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mRNA from alignment at P-wetherbeei_contig6478:1216..1488-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6478.2.1 ID=mRNA_P-wetherbeei_contig6478.2.1|Name=mRNA_P-wetherbeei_contig6478.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig6478:1216..1488- (Phaeothamnion wetherbeei SAG_119_79)
GTGAACAAGAACGAACTGATCGCGGCTGTAGCCGATGATATCGAAGTTAC
CAAAGCGGATGCCGCACGCGCCGTTGATTCCATCCTGGAAATCATCACCA
AGAGTTTGAAGAAAAATGGCGAAGTCCGTCTTGTTGGATTCGGCACCTTT
TCTGTCGTTAAGCGCAAGGCGTCCGAAGGACGTAATCCGCGCACTGGCGA
AGCCATCAAAATTCCGGCGTCCAAGCAGCCCAAGTTCAAGGCGGGCAAGG
CTTTGAAGGATGCAGTAAACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6478:1216..1488-

>mRNA_P-wetherbeei_contig6478.2.1 ID=mRNA_P-wetherbeei_contig6478.2.1|Name=mRNA_P-wetherbeei_contig6478.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig6478:1216..1488- (Phaeothamnion wetherbeei SAG_119_79)
GTGAACAAGAACGAACTGATCGCGGCTGTAGCCGATGATATCGAAGTTAC
CAAAGCGGATGCCGCACGCGCCGTTGATTCCATCCTGGAAATCATCACCA
AGAGTTTGAAGAAAAATGGCGAAGTCCGTCTTGTTGGATTCGGCACCTTT
TCTGTCGTTAAGCGCAAGGCGTCCGAAGGACGTAATCCGCGCACTGGCGA
AGCCATCAAAATTCCGGCGTCCAAGCAGCCCAAGTTCAAGGCGGGCAAGG
CTTTGAAGGATGCAGTAAACTAA
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