mRNA_P-wetherbeei_contig6477.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6477.1.1
Unique NamemRNA_P-wetherbeei_contig6477.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Match: A0A6H5JG07_9PHAE (Rubredoxin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JG07_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 5.200e-43
Identity = 77/127 (60.63%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 KVMSPAEAERAAKLAEVERLRAAEKFIVKSTGEYECTQCSFVY-------AANQPRPFDDLPSTWKCPVCRSPKDTFEARTVTIAGFEENQSYGLGTNQMTGGQKNLLIFGSLAAFFLLFIAGYALE 360
            K ++ AE  + AK+ E+ERLRA EKF    TG++EC QC FVY        A     FDDLPSTW CPVC++PKDTF A+T TIAGFE+N +YG G NQMTG QKNLLIFG L AFF+LF+AGYAL+
Sbjct:  104 KPLTEAELAQKAKMEEIERLRAKEKFTTVKTGDHECLQCGFVYKPENAGQGALPGTQFDDLPSTWICPVCKAPKDTFFAQTKTIAGFEDNANYGFGANQMTGSQKNLLIFGGLFAFFVLFLAGYALD 230          
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Match: A0A6S9ELN9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ELN9_HETAK)

HSP 1 Score: 132 bits (332), Expect = 1.670e-36
Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 1
Query:   31 AAKLAEVERLRAAEKFIVKSTGEYECTQCSFVYAANQPR-------PFDDLPSTWKCPVCRSPKDTFEARTVTIAGFEENQSYGLGTNQMTGGQKNLLIFGSLAAFFLLFIAGYALE 360
            A K AE++RLR AEKFI K TGE++C+QC++VY  ++          F DLP+ ++CP C +PK  F+A TVTIAGFE+NQ YG GTN MTG QKN LIFG LA FF LF++GY L+
Sbjct:   90 AEKQAEIQRLRDAEKFITKMTGEFQCSQCNYVYKPDEGERNILPGTSFADLPTGYQCPECGAPKSFFDALTVTIAGFEDNQGYGFGTNSMTGDQKNTLIFGGLAFFFALFLSGYLLD 206          
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Match: A0A7S0GMA1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GMA1_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 5.020e-36
Identity = 66/121 (54.55%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   25 ERAAKLAEVERLRAAEKFIVKSTGEYECTQCSFVYAANQPRP---------FDDLPSTWKCPVCRSPKDTFEARTVTIAGFEENQSYGLGTNQMTGGQKNLLIFGSLAAFFLLFIAGYALE 360
            E+ AK  E+ RLRAAEKF  K TG++EC +C FVY A    P         F+DLP  W CPVC  PKDTFE +   +AGF ENQ YG GTN +T GQK+ LI+GSLAAFF LF+ GY + 
Sbjct:  114 EQEAKAKEIARLRAAEKFFRKGTGDFECVECQFVYKAENGDPESLIAKGTAFEDLPEDWLCPVCGQPKDTFEEQGKIVAGFAENQGYGFGTNSLTEGQKSALIYGSLAAFFALFLLGYKMN 234          
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Match: A0A7S2DCL4_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCL4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.780e-35
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 1
Query:   46 EVERLRAAEKFIVKSTGEYECTQCSFVYAAN-QPRPFDDLPSTWKCPVCRSPKDTFEARTVTIAGFEENQSYGLGTNQMTGGQKNLLIFGSLAAFFLLFIAGYALE 360
            E++RLRAAEKFIV++TG+Y C  C +VY  N Q   F  LP++W+CP C S K  F+++T TIAGF+ENQ YG GTN+MTG  KN LIFGSLA F +LF++GY LE
Sbjct:   77 EIQRLRAAEKFIVEATGKYSCKVCKYVYDENAQGTAFVSLPNSWRCPQCLSQKGVFKSQTQTIAGFQENQEYGFGTNKMTGESKNGLIFGSLAFFAVLFLSGYLLE 182          
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Match: A0A7S2RF64_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RF64_9STRA)

HSP 1 Score: 126 bits (317), Expect = 4.720e-35
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 1
Query:   46 EVERLRAAEKFIVKSTGEYECTQCSFVY-AANQPRPFDDLPSTWKCPVCRSPKDTFEARTVTIAGFEENQSYGLGTNQMTGGQKNLLIFGSLAAFFLLFIAGYALE 360
            E +RLR AEKF+V++TG  EC  C +VY  A +   F +LPS+W+CP C S K  FE +T T+AGFEEN  YG GTN MT G+KN LIFGSLAAFF+LF+ GY LE
Sbjct:   35 ENQRLRDAEKFVVETTGRAECKTCGYVYDEATEGTQFVELPSSWRCPQCLSQKGFFEVQTRTLAGFEENLQYGFGTNTMTAGEKNNLIFGSLAAFFVLFLGGYLLE 140          
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Match: A0A7S1HWH9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HWH9_9EUGL)

HSP 1 Score: 128 bits (322), Expect = 4.900e-34
Identity = 63/128 (49.22%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    4 VMSPAEAERAAKLAEVERLRAAEKFIVKSTGEYECTQCSFVYAANQPRP---------FDDLPSTWKCPVCRSPKDTFEARTVTIAGFEENQSYGLGTNQMTGGQKNLLIFGSLAAFFLLFIAGYALE 360
            ++ P E ER  K  +++ L+A EKF+   TG++EC  C++ Y A +  P         F+DLP+ W+CP C +PK  F+   V +AGFE NQSYGLGTN MTGGQK++LI+G+L AFF LFI+GYAL+
Sbjct:  168 ILDPLEEERLEKQRKIQELKAQEKFMRLGTGKWECQDCTYQYNAAKGDPNYPIAAGTQFEDLPADWQCPTCGAPKSKFKTDGVEVAGFEANQSYGLGTNSMTGGQKSILIYGALIAFFALFISGYALD 295          
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Match: A0A8J9WIW6_9CHLO (Probable rubredoxin at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WIW6_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 1.200e-33
Identity = 65/123 (52.85%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   19 EAERAAKLAEVERLRAAEKFIVKSTGEYECTQCSFVYAANQPRP---------FDDLPSTWKCPVCRSPKDTFEARTVTIAGFEENQSYGLGTNQMTGGQKNLLIFGSLAAFFLLFIAGYALE 360
            E+E A K AE +RLRAAEKF+V  TGE  C  C + Y      P         F DLP  W CP+C + K TF+++   IAGF ENQ YGLGTN +TGGQK+LLIFGSL  FF LF+ GY +E
Sbjct:   83 ESEAAQKKAEADRLRAAEKFMVVGTGEAVCAGCGYEYMPKNGDPEYPITPGTLFTDLPDDWNCPICGAEKQTFKSKAREIAGFAENQKYGLGTNSLTGGQKSLLIFGSLLLFFFLFLGGYFIE 205          
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Match: I0Z237_COCSC (Rubredoxin-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z237_COCSC)

HSP 1 Score: 121 bits (304), Expect = 3.940e-33
Identity = 64/123 (52.03%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   19 EAERAAKLAEVERLRAAEKFIVKSTGEYECTQCSFVYAANQP---------RPFDDLPSTWKCPVCRSPKDTFEARTVTIAGFEENQSYGLGTNQMTGGQKNLLIFGSLAAFFLLFIAGYALE 360
            E+E A K AE +RLRAAEKF+V  TGE  C  C + Y               PF  LP  W CP+C + K TF+++   IAGF ENQ YGLGTN +T GQK+LLIFGSL AFF LF+ GY +E
Sbjct:   14 ESEAAQKKAEADRLRAAEKFMVVGTGEAICAGCGYEYLPKNGDPEYPITPGTPFTQLPDDWNCPICGADKVTFQSKAKEIAGFAENQRYGLGTNSLTSGQKSLLIFGSLIAFFFLFLGGYFIE 136          
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Match: A0A7S3K377_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K377_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.440e-33
Identity = 64/114 (56.14%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   46 EVERLRAAEKFIVKSTGEYECTQCSFVY--AANQP-------RPFDDLPSTWKCPVCRSPKDTFEARTVTIAGFEENQSYGLGTNQMTGGQKNLLIFGSLAAFFLLFIAGYALE 360
            E+ RLRAAEKFI + TG Y C  CS+ Y     QP        PF  LP++W+CP CR+ KD FE +T+TIAGF ENQ YGLG N MT   K+ LIFGSLAAFF+LF+ GY L 
Sbjct:   77 EIARLRAAEKFIEQETGIYICKVCSYKYDPEVGQPIGGIQPGTPFSQLPASWRCPTCRAQKDAFEPQTLTIAGFAENQGYGLGGNAMTEESKSTLIFGSLAAFFVLFMGGYLLN 190          
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Match: A0A835Z7Q6_9STRA (Dolichyl-P-Glc:Glc(1)Man(9)GlcNAc(2)-PP-dolichol alpha-1,3-glucosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 7.200e-33
Identity = 77/159 (48.43%), Postives = 85/159 (53.46%), Query Frame = 1
Query:   55 RLRAAEKFIVKSTGEYECTQCSFVYAANQ-PRPFDDLPSTWKCP---------------VCRSPKDTFEARTVTIAGFEENQ-----------------------------------------SYGLGTNQMTGGQKNLLIFGSLAAFFLLFIAGYALE 360
            RLRAAEKFIV+STG+YEC  C++VY A Q  R F+DLP TWKCP               VCR+PKDTF A+TVTIAGFEENQ                                          YG GTN MTGGQKNLLIFG L  F  LF+ GYALE
Sbjct:  743 RLRAAEKFIVRSTGDYECRSCAYVYMAKQNERNFEDLPGTWKCPXXXXXXXXXXXXXXXVCRAPKDTFMAQTVTIAGFEENQRTINLKPLVNAPIRGYGFGASLEYERGQCRALGAFAAMDGLGYGFGTNSMTGGQKNLLIFGGLGVFLALFLLGYALE 901          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6477.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG07_9PHAE5.200e-4360.63Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A6S9ELN9_HETAK1.670e-3656.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0GMA1_9EUKA5.020e-3654.55Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2DCL4_9STRA2.780e-3559.43Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2RF64_9STRA4.720e-3559.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1HWH9_9EUGL4.900e-3449.22Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A8J9WIW6_9CHLO1.200e-3352.85Probable rubredoxin at C-terminar half n=1 Tax=Coc... [more]
I0Z237_COCSC3.940e-3352.03Rubredoxin-like protein n=1 Tax=Coccomyxa subellip... [more]
A0A7S3K377_9STRA6.440e-3356.14Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835Z7Q6_9STRA7.200e-3348.43Dolichyl-P-Glc:Glc(1)Man(9)GlcNAc(2)-PP-dolichol a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6477contigP-wetherbeei_contig6477:830..1672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FU16
PFAMsRubredoxin
Model size363
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.76e-45
EggNOG OGsCOG1773@1|root,2S3MR@2759|Eukaryota
Ec32 ortholog descriptionRubredoxin
Ec32 orthologEc-27_001080.1
DescriptionRubredoxin
Cds size357
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.1343796-UTR-P-wetherbeei_contig6477:829..8351683186916.1343796-UTR-P-wetherbeei_contig6477:829..835Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6477 830..835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.143515-CDS-P-wetherbeei_contig6477:835..9231683186916.143515-CDS-P-wetherbeei_contig6477:835..923Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6477 836..923 +
1683186916.1515107-CDS-P-wetherbeei_contig6477:1403..16721683186916.1515107-CDS-P-wetherbeei_contig6477:1403..1672Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6477 1404..1672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6477.1.1prot_P-wetherbeei_contig6477.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6477 836..1672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6477.1.1

>prot_P-wetherbeei_contig6477.1.1 ID=prot_P-wetherbeei_contig6477.1.1|Name=mRNA_P-wetherbeei_contig6477.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MSPAEAERAAKLAEVERLRAAEKFIVKSTGEYECTQCSFVYAANQPRPFD
DLPSTWKCPVCRSPKDTFEARTVTIAGFEENQSYGLGTNQMTGGQKNLLI
FGSLAAFFLLFIAGYALE*
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mRNA from alignment at P-wetherbeei_contig6477:830..1672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6477.1.1 ID=mRNA_P-wetherbeei_contig6477.1.1|Name=mRNA_P-wetherbeei_contig6477.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig6477:830..1672+ (Phaeothamnion wetherbeei SAG_119_79)
AAAGTTATGAGCCCCGCGGAGGCGGAGCGGGCCGCGAAGCTGGCGGAGGT TGAGCGGCTGCGGGCCGCCGAGAAGTTTATCGTCAAGTCGACAGGTATCG CTTGGTCTACCCACAACTGTCTCACTGTGATGCTCTTGTGAAGAGGGGGC ATTCAAAGATTGATTCAGGGGTACAAAGGAGATCAGGTGTTATTCTGGAT GGATGCTCTTGGTGGGAAAGCCCTATGGTCGTCAGAGCGAAGGTGCCCAG ATGCCGCTTCTGCCGCCATCTTGTTTCAAGGAAGGTCAACGAGAACGAAG AAAATGCGCAATATGTCTCGAGCTGCACACAACATGATTTGCTACTTTCC CGTCGTCCTTGCTCCCGTCCGTCCTCCCCGGCGGGGCTCCGAATGCTGCT GTGTCAAACGGCTGCGATTTGACCTCAATGGAAACTGTGACTGCTCCGTC GTCTGGTGATATTTACTGGCCCCGGCGACCATGGACGGCGGCGGTGATGG CGACGGTGGCGGCGGCTGCGGCGGCTTCTTCCATCAATTGATGAAACCGC TGTCCCACTGACCGATCGCAACAGGCGAGTATGAGTGCACGCAGTGCTCA TTCGTCTACGCGGCGAACCAGCCGCGGCCGTTCGACGATCTGCCGTCAAC CTGGAAGTGCCCGGTCTGTCGCTCCCCGAAGGACACGTTCGAGGCGCGCA CCGTTACCATCGCTGGCTTTGAGGAGAACCAGAGCTACGGGCTCGGCACC AACCAGATGACAGGCGGGCAAAAGAACCTTCTCATCTTTGGCTCGCTGGC GGCGTTCTTCCTGCTCTTCATTGCGGGCTACGCACTGGAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6477:830..1672+

>mRNA_P-wetherbeei_contig6477.1.1 ID=mRNA_P-wetherbeei_contig6477.1.1|Name=mRNA_P-wetherbeei_contig6477.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig6477:830..1672+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCCCGCGGAGGCGGAGCGGGCCGCGAAGCTGGCGGAGGTTGAGCG
GCTGCGGGCCGCCGAGAAGTTTATCGTCAAGTCGACAGGCGAGTATGAGT
GCACGCAGTGCTCATTCGTCTACGCGGCGAACCAGCCGCGGCCGTTCGAC
GATCTGCCGTCAACCTGGAAGTGCCCGGTCTGTCGCTCCCCGAAGGACAC
GTTCGAGGCGCGCACCGTTACCATCGCTGGCTTTGAGGAGAACCAGAGCT
ACGGGCTCGGCACCAACCAGATGACAGGCGGGCAAAAGAACCTTCTCATC
TTTGGCTCGCTGGCGGCGTTCTTCCTGCTCTTCATTGCGGGCTACGCACT
GGAGTAG
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