mRNA_P-wetherbeei_contig6463.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6463.1.1
Unique NamemRNA_P-wetherbeei_contig6463.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Match: D8LPR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR2_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.240e-38
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    1 RTWGEYGGLYLPDYFFDLENAVPVDYLCSQWFLRPEWLQHMWSEWPQTFETGEDFHLSHALRKYGDIDSYVMPYLLHNPETRGS 252
            R WG +GG+Y+PDY++D ++AVPVDYLCSQWFLRPEWLQHMWSE P TFETGEDFH+SH +RKY +I +YVMP+   + ET+GS
Sbjct:  363 RKWGSHGGMYMPDYYWDQDSAVPVDYLCSQWFLRPEWLQHMWSERPMTFETGEDFHVSHTMRKYANIGTYVMPFNSDDEETKGS 446          
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Match: A0A6H5KPH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH5_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.730e-38
Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    1 RTWGEYGGLYLPDYFFDLENAVPVDYLCSQWFLRPEWLQHMWSEWPQTFETGEDFHLSHALRKYGDIDSYVMPYLLHNPETRGS 252
            R WG +GG+Y+PDY++D +NAVPVDYLCSQWFLRPEWLQHMWSE P TFETGEDFH+SH LRKY +I +YVMP+   + ET+GS
Sbjct:  377 RKWGSHGGMYMPDYYWDQDNAVPVDYLCSQWFLRPEWLQHMWSERPMTFETGEDFHVSHTLRKYANIGTYVMPFNSDDEETKGS 460          
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Match: A0A6V2VAT5_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2VAT5_EMIHU)

HSP 1 Score: 81.3 bits (199), Expect = 3.670e-16
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   19 GGLYLPDYFFDL--ENAVPVDYLCSQWFLRPEWLQHMWSEWPQTFETGEDFHLSHALRKYGDIDSYVMP 219
            GGLY+PD  + L  E  + VDYLCS WF   EW++ ++ E P T  TGEDFHLSH LRKY  + SYV+P
Sbjct:  224 GGLYVPDLAYGLAVERLLEVDYLCSAWFGETEWVRLLFREAPLTHATGEDFHLSHMLRKYAGVRSYVLP 292          
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Match: A0A7S3TDJ6_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TDJ6_EMIHU)

HSP 1 Score: 72.0 bits (175), Expect = 1.310e-13
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   52 LENAVPVDYLCSQWFLRPEWLQHMWSEWPQTFETGEDFHLSHALRKYGDIDSYVMP 219
            +E  + VDYLCS WF   EW++ ++ E P T  TGEDFHLSH LRKY  + SYV+P
Sbjct:   45 VERLLEVDYLCSAWFGETEWVRLLFREAPLTHATGEDFHLSHMLRKYAGVRSYVLP 100          
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Match: A0A7S3WWK7_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WWK7_EMIHU)

HSP 1 Score: 72.0 bits (175), Expect = 3.580e-13
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   52 LENAVPVDYLCSQWFLRPEWLQHMWSEWPQTFETGEDFHLSHALRKYGDIDSYVMP 219
            +E  + VDYLCS WF   EW++ ++ E P T  TGEDFHLSH LRKY  + SYV+P
Sbjct:   45 VERLLEVDYLCSAWFGETEWVRLLFREAPLTHATGEDFHLSHMLRKYAGVRSYVLP 100          
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Match: A0A7S3UQZ7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQZ7_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 1.130e-11
Identity = 31/86 (36.05%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 RTWGEYGGLYLPDYFFDLE--NAVPVDYLCSQWFLRPEWLQHMWSEWPQTFETGEDFHLSHALRKYGDIDSYVMPYLLHNPETRGS 252
            R  G  GGLY  D  +++     +  D +CS WFLR + ++ ++ E   T+ET ED+ LS+++R+Y +++SYV+P +  +P T G+
Sbjct:   56 RGAGAKGGLYFEDPHYNIRATRLIKADLVCSHWFLRADHVRVVFREKWVTYETAEDYQLSYSMRRYANLESYVLPSIAKDPSTWGN 141          
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Match: A0A8K1FLA7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLA7_PYTOL)

HSP 1 Score: 60.5 bits (145), Expect = 9.250e-9
Identity = 31/84 (36.90%), Postives = 41/84 (48.81%), Query Frame = 1
Query:    7 WGEYGGLYLPDY---------FFDLENAVP-------VDYLCSQWFLRPEWLQHMWSEWPQTFETGEDFHLSHALRKYGDIDSY 210
            WG  G +  P +         F +     P       VDYL   WFL   WL++   E P +FET ED HLSH +RKY +++SY
Sbjct:  234 WGNMGHIRAPTFAEYKSWPRNFTEFNTTKPPFVEYAEVDYLSGMWFLEQSWLEYFVKERPPSFETAEDMHLSHVMRKYLNLNSY 317          
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Match: UPI0004E1C2F9 (glycosyltransferase family 2 protein n=1 Tax=Dyadobacter crusticola TaxID=292407 RepID=UPI0004E1C2F9)

HSP 1 Score: 59.7 bits (143), Expect = 1.080e-8
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 1
Query:   55 ENAVPVDYLCSQWFLRPEWLQHMWSEWPQTFETGEDFHLSHALRKYGDIDSYV 213
            E    +D+ CS +F R EWL++ W  WP TFET ED H + + R  GDI + V
Sbjct:  152 EADTKIDFPCSSYFFRTEWLRYFWGVWPVTFETAEDIHFAASCRILGDIGTVV 204          
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Match: K3WTR3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTR3_GLOUD)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-8
Identity = 28/80 (35.00%), Postives = 41/80 (51.25%), Query Frame = 1
Query:    4 TWGEYGGLYLP-----------DYFFDLENAVPVDYLCSQWFLRPEWLQHMWSEWPQTFETGEDFHLSHALRKYGDIDSY 210
             WG +G L  P            Y  + ++    DYL   WFL   WL++   E P ++ET ED HLSH +RKY ++++Y
Sbjct:  239 VWGNFGHLRAPAFDGYKSWPRVGYNIESDDFAEQDYLSGMWFLEQSWLEYFVKERPPSWETSEDMHLSHVMRKYLNLNTY 318          
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Match: A0A507FP26_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FP26_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 3.200e-8
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   70 VDYLCSQWFLRPEWLQHMWSEWPQTFETGEDFHLSHALRKYGDIDSY 210
            +DYL S WF    WL++ + E P T+ETGED HLSH +RKY  +++Y
Sbjct:  291 MDYLSSLWFFEQSWLEYFFKERPWTWETGEDIHLSHTVRKYLHLNTY 337          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6463.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LPR2_ECTSI1.240e-3869.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPH5_9PHAE1.730e-3871.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V2VAT5_EMIHU3.670e-1655.07Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3TDJ6_EMIHU1.310e-1355.36Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3WWK7_EMIHU3.580e-1355.36Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S3UQZ7_HETAK1.130e-1136.05Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8K1FLA7_PYTOL9.250e-936.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI0004E1C2F91.080e-845.28glycosyltransferase family 2 protein n=1 Tax=Dyado... [more]
K3WTR3_GLOUD1.260e-835.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A507FP26_9FUNG3.200e-851.06Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6463contigP-wetherbeei_contig6463:237..1375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPR2
Model size256
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.03e-39
EggNOG OGs2CMCB@1|root,2QPYF@2759|Eukaryota
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186915.2278779-CDS-P-wetherbeei_contig6463:236..2901683186915.2278779-CDS-P-wetherbeei_contig6463:236..290Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6463 237..290 +
1683186915.2415664-CDS-P-wetherbeei_contig6463:626..6941683186915.2415664-CDS-P-wetherbeei_contig6463:626..694Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6463 627..694 +
1683186915.251158-CDS-P-wetherbeei_contig6463:1002..10391683186915.251158-CDS-P-wetherbeei_contig6463:1002..1039Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6463 1003..1039 +
1683186915.2683272-CDS-P-wetherbeei_contig6463:1279..13751683186915.2683272-CDS-P-wetherbeei_contig6463:1279..1375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6463 1280..1375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6463.1.1prot_P-wetherbeei_contig6463.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6463 237..1375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6463.1.1

>prot_P-wetherbeei_contig6463.1.1 ID=prot_P-wetherbeei_contig6463.1.1|Name=mRNA_P-wetherbeei_contig6463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
RTWGEYGGLYLPDYFFDLENAVPVDYLCSQWFLRPEWLQHMWSEWPQTFE
TGEDFHLSHALRKYGDIDSYVMPYLLHNPETRGST
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mRNA from alignment at P-wetherbeei_contig6463:237..1375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6463.1.1 ID=mRNA_P-wetherbeei_contig6463.1.1|Name=mRNA_P-wetherbeei_contig6463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1139bp|location=Sequence derived from alignment at P-wetherbeei_contig6463:237..1375+ (Phaeothamnion wetherbeei SAG_119_79)
AGGACGTGGGGCGAGTACGGCGGCCTCTACCTCCCAGACTACTTTTTCGA TCTTGTGAGTCCCTCTTTGTTCTTTCTGTCTTTTTTCTTCTGCCTCTTCT TCTTGCATCTCTAAAGCTTGTTCTTCGGCCCGCTGCCTTTGTTCTTCGCT TCGTTTCGCCTTGGCGTGCACTGCATCTGGTTGCCGGTCAGTTCCAGCCG GTGTCAGAGTCAGTCCTTCCTGCTTGGATTGAGCACGCGCGATTTCTGCA TTGCAGCCGCTGTAACGGCTGTCTTTCCTTGGAAAAAAGTCTGCTGTCGT CCGTTTGCTTGCACGCAACCGCCAATGCCGCGCCCGGCACACAAGCCTGA CAACATTCGGTTTCCTCGCTGCTCTGCGCCGCTGCTGCAGGAGAACGCGG TGCCGGTGGATTACCTGTGCAGCCAGTGGTTCCTGCGGCCCGAGTGGCTA CAGCACATGTGAGACCTTCCGGGCCGAGCGCACCCCCTTTCGGCTATCGC CAGCATTTATTATTAGCTCACGGCACCACCACAGCTTGCGGCGAGCTTTT TTTCTGCCGTCACCGTCTTCCCAACTCTTCCAGCGTCATGGCACACTTAT ACAGTTCTGAACTTTCTGAATATCCTCAAATTTCTGAATTCCTGATTTTC TGAAATTCCTAAGCTTCTGAGAATTCCCCGACCTCTTGAATCTCCGCCTT TTTGACCTTAAATTTCTGACTTTCCGACCTTCCCTTTTTCCATCTCATAC CTAAAAATTTATTTAGGTGGTCGGAGTGGCCGCAGACGTTCGAGACGGGC GAGGTGGGGAGAAAAGCACCAATTATTCGCGCTGCCTTCCATTTCTCCCC GAACGGGTGGAGATTGACGTGGGATAGGGGTTGGACAACATCTTGAGTCA TACGCCCGCCCACCTCCGTTCTTATATCTTGCCTCGCTCCAAAACCGCTT CAAGGGCACAGATTTTGCCAAATTCTTTTAAACTTTTGCTCTAAGGAAGG ACCCTTCGCCTCACGTTTTTCGGTTCACCTTCTCTTCTCTCAGGACTTTC ACCTCAGCCACGCCCTGCGCAAGTACGGTGACATCGACAGCTACGTCATG CCCTACCTGCTGCATAACCCTGAGACCCGCGGCTCCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6463:237..1375+

>mRNA_P-wetherbeei_contig6463.1.1 ID=mRNA_P-wetherbeei_contig6463.1.1|Name=mRNA_P-wetherbeei_contig6463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig6463:237..1375+ (Phaeothamnion wetherbeei SAG_119_79)
AGGACGTGGGGCGAGTACGGCGGCCTCTACCTCCCAGACTACTTTTTCGA
TCTTGAGAACGCGGTGCCGGTGGATTACCTGTGCAGCCAGTGGTTCCTGC
GGCCCGAGTGGCTACAGCACATGTGGTCGGAGTGGCCGCAGACGTTCGAG
ACGGGCGAGGACTTTCACCTCAGCCACGCCCTGCGCAAGTACGGTGACAT
CGACAGCTACGTCATGCCCTACCTGCTGCATAACCCTGAGACCCGCGGCT
CCACC
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