mRNA_P-wetherbeei_contig6452.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6452.2.1
Unique NamemRNA_P-wetherbeei_contig6452.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6452.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6452contigP-wetherbeei_contig6452:1608..3432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1530
Hectar predicted targeting categoryother localisation
Exons2
Cds size1530
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186914.6714425-CDS-P-wetherbeei_contig6452:1607..19551683186914.6714425-CDS-P-wetherbeei_contig6452:1607..1955Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6452 1608..1955 -
1683186914.681723-CDS-P-wetherbeei_contig6452:2250..34321683186914.681723-CDS-P-wetherbeei_contig6452:2250..3432Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6452 2251..3432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6452.2.1prot_P-wetherbeei_contig6452.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6452 1608..3432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6452.2.1

>prot_P-wetherbeei_contig6452.2.1 ID=prot_P-wetherbeei_contig6452.2.1|Name=mRNA_P-wetherbeei_contig6452.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=510bp
DAGADAGAEGDDAEGDAEERGGAEAKSTAPAAAVTVPVAALPDEAALGPG
VEGSTRAKNGKSKSKKGKGGGTAVATGGAAAAEAPGGSSQSASLSASKAL
GPAARSDSPAVPAETEDPGDALGDGLDEDVLKRLGFAFVIRELNDDFLPG
AVVARSALPEGQDSSLKSRRLTRRPLVVMLPPVNGGVAALAENRVGAIIV
QNAESVAAAIKASRPDAAEAVVVAASTPAKPKKKKSVAKATAAAAAVAEK
GGGGTRGPDSDDEPGNTAEAAAAAAKKGWAWPSMGLGGWRGGPAADADTD
ALTSTPLDEKETKALAEAEATTTKKAREEEEAAAKAMAVAARPPLPPQVQ
EKINQIATAGYEALFTEVLGMAREMGQHAAAAKDNPAIRDMRWKALKDKA
KTQHTQVRAEMEKKRVEAEEQIAKIRQNIKAPPAADPEYVARQARERLAG
VWTADVAPRALLLWAYRRRDPLGFAGGPTDTPPLDEAPACVVVTPLPVTA
TDGGGAAAGA
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mRNA from alignment at P-wetherbeei_contig6452:1608..3432-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6452.2.1 ID=mRNA_P-wetherbeei_contig6452.2.1|Name=mRNA_P-wetherbeei_contig6452.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1825bp|location=Sequence derived from alignment at P-wetherbeei_contig6452:1608..3432- (Phaeothamnion wetherbeei SAG_119_79)
GATGCGGGCGCCGACGCGGGCGCGGAGGGCGACGACGCTGAGGGCGATGC
CGAGGAAAGAGGCGGTGCCGAAGCGAAGTCCACTGCGCCCGCGGCGGCGG
TGACGGTGCCGGTGGCGGCCTTGCCCGACGAAGCGGCCCTGGGGCCGGGC
GTCGAAGGGTCCACCAGGGCCAAGAATGGGAAGTCCAAGAGCAAGAAAGG
CAAGGGCGGAGGGACAGCCGTCGCCACTGGTGGGGCCGCTGCGGCCGAAG
CTCCGGGCGGCTCGTCGCAGTCGGCGTCGCTGTCGGCTTCTAAGGCATTA
GGGCCGGCGGCGCGGTCGGACTCGCCTGCTGTGCCGGCAGAAACGGAAGA
CCCGGGGGACGCGTTGGGCGACGGTCTCGATGAGGACGTCCTGAAACGGC
TGGGCTTCGCGTTCGTCATCCGCGAGCTGAACGATGACTTTCTGCCGGGG
GCCGTCGTGGCGCGCAGCGCGCTGCCAGAGGGCCAGGACAGCAGCCTCAA
GTCGCGGCGGCTGACACGACGGCCACTGGTGGTTATGCTGCCACCTGTCA
ACGGCGGCGTCGCCGCGCTGGCCGAAAACCGCGTCGGCGCCATCATCGTG
CAGAACGCCGAGTCGGTGGCCGCCGCCATCAAAGCCAGCCGGCCGGATGC
CGCCGAGGCGGTCGTGGTGGCCGCAAGCACCCCGGCCAAGCCGAAGAAGA
AGAAGAGCGTCGCCAAGGCGACGGCGGCGGCAGCGGCCGTGGCGGAAAAA
GGGGGGGGGGGCACGCGGGGTCCTGACAGCGATGACGAGCCCGGGAACAC
GGCCGAGGCCGCCGCCGCCGCTGCCAAAAAGGGCTGGGCCTGGCCCAGTA
TGGGCTTGGGCGGCTGGCGCGGCGGGCCCGCCGCGGACGCCGACACCGAC
GCGCTGACGTCGACCCCGCTGGACGAAAAGGAAACGAAAGCGCTGGCGGA
AGCGGAGGCCACGACCACCAAGAAGGCCAGGGAGGAGGAGGAGGCGGCGG
CGAAAGCGATGGCGGTGGCGGCGCGGCCGCCGCTCCCCCCGCAGGTCCAG
GAGAAGATCAACCAGATCGCCACAGCGGGCTACGAGGCGCTGTTCACGGA
GGTGCTGGGCATGGCGCGAGAGATGGGGCAGCACGCCGCTGCCGCCAAGG
ACAACCCGGCGATCCGCGACATGCGCTGGAAGGTGAGGAGCGAGAACAGA
AGGAGGGATTTGGGTTCTTCTTGTCTCTTTCGTTCTTGTTCCCCCTGGCA
GCGGAGGCGCATGTCGCTTTTCTTGTTGCTCTTTATCGGGTCATTGCTGG
CAGCGGGGCGGGCGTTCTGTAATGGGTTGGAGATTTGGAGAGGGAGCGAA
GCCGTTTTTCCCTTGGGAGGGTTGCATAATTGCCGGCGTCGTTGCTACCA
TTAATACTCGCTCGCATCCTTTTCGGCATCGATACTCCATGCTCCGTTTC
TTGCGTTCCGACGGTCCCACGATCCAGGCCCTCAAGGATAAGGCGAAGAC
GCAGCACACCCAGGTGAGGGCGGAGATGGAGAAGAAGCGGGTGGAGGCAG
AGGAGCAGATTGCCAAAATCCGCCAGAACATCAAGGCTCCGCCAGCCGCC
GACCCCGAGTACGTCGCCCGCCAGGCCCGGGAGCGCCTGGCGGGTGTTTG
GACCGCCGACGTCGCGCCGCGCGCTCTGCTGCTGTGGGCGTACCGCCGTC
GTGACCCGCTCGGCTTCGCCGGTGGCCCGACGGACACCCCGCCGCTGGAC
GAGGCGCCGGCCTGTGTCGTCGTGACGCCGCTCCCGGTGACGGCGACGGA
CGGCGGCGGTGCCGCTGCCGGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6452:1608..3432-

>mRNA_P-wetherbeei_contig6452.2.1 ID=mRNA_P-wetherbeei_contig6452.2.1|Name=mRNA_P-wetherbeei_contig6452.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1530bp|location=Sequence derived from alignment at P-wetherbeei_contig6452:1608..3432- (Phaeothamnion wetherbeei SAG_119_79)
GATGCGGGCGCCGACGCGGGCGCGGAGGGCGACGACGCTGAGGGCGATGC
CGAGGAAAGAGGCGGTGCCGAAGCGAAGTCCACTGCGCCCGCGGCGGCGG
TGACGGTGCCGGTGGCGGCCTTGCCCGACGAAGCGGCCCTGGGGCCGGGC
GTCGAAGGGTCCACCAGGGCCAAGAATGGGAAGTCCAAGAGCAAGAAAGG
CAAGGGCGGAGGGACAGCCGTCGCCACTGGTGGGGCCGCTGCGGCCGAAG
CTCCGGGCGGCTCGTCGCAGTCGGCGTCGCTGTCGGCTTCTAAGGCATTA
GGGCCGGCGGCGCGGTCGGACTCGCCTGCTGTGCCGGCAGAAACGGAAGA
CCCGGGGGACGCGTTGGGCGACGGTCTCGATGAGGACGTCCTGAAACGGC
TGGGCTTCGCGTTCGTCATCCGCGAGCTGAACGATGACTTTCTGCCGGGG
GCCGTCGTGGCGCGCAGCGCGCTGCCAGAGGGCCAGGACAGCAGCCTCAA
GTCGCGGCGGCTGACACGACGGCCACTGGTGGTTATGCTGCCACCTGTCA
ACGGCGGCGTCGCCGCGCTGGCCGAAAACCGCGTCGGCGCCATCATCGTG
CAGAACGCCGAGTCGGTGGCCGCCGCCATCAAAGCCAGCCGGCCGGATGC
CGCCGAGGCGGTCGTGGTGGCCGCAAGCACCCCGGCCAAGCCGAAGAAGA
AGAAGAGCGTCGCCAAGGCGACGGCGGCGGCAGCGGCCGTGGCGGAAAAA
GGGGGGGGGGGCACGCGGGGTCCTGACAGCGATGACGAGCCCGGGAACAC
GGCCGAGGCCGCCGCCGCCGCTGCCAAAAAGGGCTGGGCCTGGCCCAGTA
TGGGCTTGGGCGGCTGGCGCGGCGGGCCCGCCGCGGACGCCGACACCGAC
GCGCTGACGTCGACCCCGCTGGACGAAAAGGAAACGAAAGCGCTGGCGGA
AGCGGAGGCCACGACCACCAAGAAGGCCAGGGAGGAGGAGGAGGCGGCGG
CGAAAGCGATGGCGGTGGCGGCGCGGCCGCCGCTCCCCCCGCAGGTCCAG
GAGAAGATCAACCAGATCGCCACAGCGGGCTACGAGGCGCTGTTCACGGA
GGTGCTGGGCATGGCGCGAGAGATGGGGCAGCACGCCGCTGCCGCCAAGG
ACAACCCGGCGATCCGCGACATGCGCTGGAAGGCCCTCAAGGATAAGGCG
AAGACGCAGCACACCCAGGTGAGGGCGGAGATGGAGAAGAAGCGGGTGGA
GGCAGAGGAGCAGATTGCCAAAATCCGCCAGAACATCAAGGCTCCGCCAG
CCGCCGACCCCGAGTACGTCGCCCGCCAGGCCCGGGAGCGCCTGGCGGGT
GTTTGGACCGCCGACGTCGCGCCGCGCGCTCTGCTGCTGTGGGCGTACCG
CCGTCGTGACCCGCTCGGCTTCGCCGGTGGCCCGACGGACACCCCGCCGC
TGGACGAGGCGCCGGCCTGTGTCGTCGTGACGCCGCTCCCGGTGACGGCG
ACGGACGGCGGCGGTGCCGCTGCCGGCGCC
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