mRNA_P-wetherbeei_contig6448.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6448.1.1
Unique NamemRNA_P-wetherbeei_contig6448.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Match: A0A225X0U8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0U8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.960e-18
Identity = 56/114 (49.12%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 VNERLVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRLPPDLDTDELVAKRANIDRIKEFSKNLREINKRQQGQTPPHRRTEPAPEPCARERALAFAKTLPR 342
            +NE  V T  D L FSR+AR ++  + P  L  Y++ +P    Y ELG+L PDL+TDELV KRA  +RIK FS+NLR INK  Q + P   RTE       RE+ LAFAK +PR
Sbjct:  106 INESHVVTGHDQLAFSRKARTVQ--YEPCKLSQYKKEKP--DGYYELGKLQPDLNTDELVEKRAKNERIKAFSQNLRTINKNAQTKKPVETRTEQNKPKSTREKGLAFAKRVPR 215          
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Match: A0A3F2RGZ4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RGZ4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.330e-17
Identity = 57/117 (48.72%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 VNERLVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRLPPDLDTDELVAKRANIDRIKEFSKNLREINKRQQGQTPPHRRTEPAP---EPCARERALAFAKTLPR 342
            VNE  V T  D L FSR+ARP++  F P  L  Y++ +P    Y ELG+L PDL+TDELV KRA  +RIK FS+NLR INK  Q + P     E A        RE+ LAFAK +P+
Sbjct:   61 VNESRVVTDQDQLAFSRKARPVQ--FEPCKLSQYKKEKP--DGYYELGKLQPDLNTDELVEKRAKNERIKAFSQNLRTINKNVQSKKPAESSNEQAAITKPKSTREKGLAFAKRVPK 173          
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Match: A0A329RYB5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RYB5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.370e-17
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 VNERLVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRLPPDLDTDELVAKRANIDRIKEFSKNLREINKRQQGQTPPHRRTEPAPEPCARERALAFAKTLPR 342
            +NE  V T  D L FSR+ARP++  + P  L  Y++ +P    Y ELG+L PDL+TDELV KRAN +RIK FS+NLR IN+  Q + P    T        RE+ LAFAK +P+
Sbjct:  164 INEGRVVTGQDQLAFSRKARPVQ--YEPCKLSQYKKEKP--DGYYELGKLQPDLNTDELVEKRANNERIKAFSQNLRTINRNAQSKKPADASTANLKPKSTREKGLAFAKRVPK 273          
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Match: A0A8K1FJR3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJR3_PYTOL)

HSP 1 Score: 85.5 bits (210), Expect = 4.430e-17
Identity = 58/121 (47.93%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    4 NERLVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRLPPDLDTDELVAKRANIDRIKEFSKNLREINKRQQGQTPPHRRTEPAP--------EPCARERALAFAKTLPR 342
            NE  V T  D L FSR+ARP++  F P TL  Y++ +PA   Y ELG+L PDL++ ELV KRAN++RIK FSKNLREINK     T P    E           +  +R++ALAFAK +P+
Sbjct:  238 NEARVQTDDDQLAFSRKARPVQ--FAPCTLSQYKKEKPA--GYYELGKLQPDLNSSELVQKRANLERIKAFSKNLREINK----VTAPSHNPEDXXXXXXXXXXQSSSRDKALAFAKHIPK 350          
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Match: G4YE07_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YE07_PHYSP)

HSP 1 Score: 82.8 bits (203), Expect = 1.230e-16
Identity = 55/117 (47.01%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 VNERLVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRLPPDLDTDELVAKRANIDRIKEFSKNLREINKRQQGQTPPHRRTEP---APEPCARERALAFAKTLPR 342
            +NE  V T  D L FSR+ARP++  + P  L  Y++ +P    Y ELG+L PDL+TDELV KRA  +RIK FS+NLR INK  Q + P     E    A     RE+ LAFAK +P+
Sbjct:   92 INESRVITDQDQLAFSRKARPVQ--YEPCKLSQYKKEKP--DGYYELGKLQPDLNTDELVEKRAKNERIKAFSQNLRVINKNAQAKKPTESGNEQKATAKAKSTREKGLAFAKRVPK 204          
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Match: A0A6G0WMC1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMC1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.670e-16
Identity = 57/113 (50.44%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    4 NERLVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRLPPDLDTDELVAKRANIDRIKEFSKNLREINKRQQGQTPPHRRTEPAPE----PCARERALAFAK 330
            NE    T+ D L FS++ARP+   + P TL +YR+ +  K  Y ELG+L PDL+  ELV KRAN +RIKEFSKNLR+IN     QT P ++ E   E    P  RE+ALAFAK
Sbjct:   85 NELKAATEGDQLAFSKKARPVH--YEPCTLTEYRQEKQDK--YYELGKLKPDLNATELVEKRANQERIKEFSKNLRQIN-----QTLPKKQKETVVEKEKAPSNREKALAFAK 188          
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Match: D0NGS2_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NGS2_PHYIT)

HSP 1 Score: 81.6 bits (200), Expect = 2.020e-16
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 VNERLVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRLPPDLDTDELVAKRANIDRIKEFSKNLREINKRQQGQTPPHRRTEP---APEPCARERALAFAKTLPR 342
            +NE  V T+ D L FSR+AR ++  + P  L  Y++ +P    Y ELG+L PDL+TDELV KRA  DRIK FS+NLR INK  Q + P     E    A    +RE+ LAFAK +P+
Sbjct:   86 INESRVVTEQDQLAFSRKARTVQ--YEPCKLAQYKKEKP--DGYYELGKLQPDLNTDELVEKRAKNDRIKAFSQNLRTINKNTQSKKPVDATKEQLANAKPRSSREKGLAFAKRVPK 198          
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Match: A0A2P4WXT8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXT8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.450e-16
Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 VNERLVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRLPPDLDTDELVAKRANIDRIKEFSKNLREINKRQQGQTPPHRRTEPAPEP-CARERALAFAKTLPR 342
            +NE  V T  D L FSR+AR ++  + P  L  Y++ +P    Y ELG+L PDL+TDELV KRA  +RIK FS+NLR INK  Q + P   + E   +P   RE+ LAFAK +P+
Sbjct:   98 INESRVVTGQDQLAFSRKARTVQ--YEPCKLSQYKKEKP--DGYYELGKLQPDLNTDELVEKRAKNERIKAFSQNLRAINKSAQAKKPVDTKIESEIKPKSTREKGLAFAKQVPK 208          
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Match: A0A662XBH6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBH6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.520e-16
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 VNERLVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRLPPDLDTDELVAKRANIDRIKEFSKNLREINKRQQGQTPP---HRRTEPAPEPCARERALAFAKTLPR 342
            +NE  V ++ D L FSR+ARP+   + P  L  Y++ +P    Y ELG+L PDL+ D+LV KRAN +RIK FSKNLR INK  Q + P    + +T P      R++ LAFAK LP+
Sbjct:  207 INEDRVVSEQDQLAFSRKARPVH--YEPCKLSQYKKEKP--DGYYELGKLQPDLNADDLVQKRANKERIKAFSKNLRIINKTAQARKPVEAGNEQTAPNKPTSTRDKGLAFAKRLPK 319          
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Match: D8LRG3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRG3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 4.930e-16
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   13 LVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRLPPDLDTDELVAKRANIDRIKEFSKNLREIN 240
            LV T  DMLLFS++AR ++  ++P TL++YR  +P    Y+ELG+L PDL TDELVAKRAN +RIKEFS NLR+IN
Sbjct:  339 LVKTPKDMLLFSKKARQVD--YKPCTLKEYREAKPT--GYVELGKLQPDLYTDELVAKRANAERIKEFSTNLRKIN 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6448.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A225X0U8_9STRA4.960e-1849.12Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A3F2RGZ4_9STRA1.330e-1748.72Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A329RYB5_9STRA1.370e-1747.37Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A8K1FJR3_PYTOL4.430e-1747.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4YE07_PHYSP1.230e-1647.01Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6G0WMC1_9STRA1.670e-1650.44Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D0NGS2_PHYIT2.020e-1647.01Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A2P4WXT8_9STRA3.450e-1646.96Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A662XBH6_9STRA3.520e-1646.15Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
D8LRG3_ECTSI4.930e-1660.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6448contigP-wetherbeei_contig6448:2700..3385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000013781
PFAMsBACK,BTB,Kelch_1,Kelch_4
Model size366
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.41e-19
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota,1MDK7@121069|Pythiales
Ec32 ortholog descriptionProtein of unknown function DUF4591
Ec32 orthologEc-18_004430.1
DescriptionSource PGD
Cds size366
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186914.2724168-CDS-P-wetherbeei_contig6448:2699..28791683186914.2724168-CDS-P-wetherbeei_contig6448:2699..2879Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6448 2700..2879 -
1683186914.2896583-CDS-P-wetherbeei_contig6448:3199..33851683186914.2896583-CDS-P-wetherbeei_contig6448:3199..3385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6448 3200..3385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6448.1.1prot_P-wetherbeei_contig6448.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6448 2700..3385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6448.1.1

>prot_P-wetherbeei_contig6448.1.1 ID=prot_P-wetherbeei_contig6448.1.1|Name=mRNA_P-wetherbeei_contig6448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
VNERLVHTKADMLLFSRRARPLECGFRPYTLRDYRRRQPAKGAYLELGRL
PPDLDTDELVAKRANIDRIKEFSKNLREINKRQQGQTPPHRRTEPAPEPC
ARERALAFAKTLPRQATSTAAS
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mRNA from alignment at P-wetherbeei_contig6448:2700..3385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6448.1.1 ID=mRNA_P-wetherbeei_contig6448.1.1|Name=mRNA_P-wetherbeei_contig6448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=686bp|location=Sequence derived from alignment at P-wetherbeei_contig6448:2700..3385- (Phaeothamnion wetherbeei SAG_119_79)
GTTAACGAGCGGCTGGTGCACACGAAGGCTGACATGCTGCTCTTCAGCCG GCGGGCGCGGCCACTGGAGTGCGGCTTCCGGCCATACACGCTGCGCGACT ATCGCCGCCGCCAGCCGGCCAAAGGAGCCTACCTAGAGTTGGGGCGGCTC CCGCCGGATCTCGACACCGACGAGCTCGTCGCCAAGGTCAGTAAATGGGC GGGGCTGCAAAGGGTGAAGCTGGCCGGCTCAGATTCCGGATTCGGGATTC GGGTTTCGAGCGGGGCGAGAGGGTGGGGGAGGGGAAGAGGGGGAAGGAAG GCGAGGGCCAGCCACGGCGAGACGCCGGACGCGCATGCAACGACACGCTT CGGCGCGAGCATCTTGAGGTGGGTGGACAGTTCAGGTCTTCGATCACGAG CAAGATGAAGACATAGTTCTTACAAGTGAAACGGCCGCGCTTAACCCCTC TGATTCGCTCGCCCAACCTCCCATCTCTATCTCGTGACACCGTATTCCTC TCCCAGCGCGCCAACATCGACCGAATCAAGGAATTTTCCAAGAACTTGCG CGAGATCAATAAGCGGCAGCAGGGCCAGACGCCGCCCCATAGACGGACCG AGCCCGCGCCCGAGCCCTGCGCCCGGGAACGCGCCCTGGCCTTCGCCAAG ACCCTGCCGAGGCAGGCGACGTCCACTGCCGCATCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6448:2700..3385-

>mRNA_P-wetherbeei_contig6448.1.1 ID=mRNA_P-wetherbeei_contig6448.1.1|Name=mRNA_P-wetherbeei_contig6448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig6448:2700..3385- (Phaeothamnion wetherbeei SAG_119_79)
GTTAACGAGCGGCTGGTGCACACGAAGGCTGACATGCTGCTCTTCAGCCG
GCGGGCGCGGCCACTGGAGTGCGGCTTCCGGCCATACACGCTGCGCGACT
ATCGCCGCCGCCAGCCGGCCAAAGGAGCCTACCTAGAGTTGGGGCGGCTC
CCGCCGGATCTCGACACCGACGAGCTCGTCGCCAAGCGCGCCAACATCGA
CCGAATCAAGGAATTTTCCAAGAACTTGCGCGAGATCAATAAGCGGCAGC
AGGGCCAGACGCCGCCCCATAGACGGACCGAGCCCGCGCCCGAGCCCTGC
GCCCGGGAACGCGCCCTGGCCTTCGCCAAGACCCTGCCGAGGCAGGCGAC
GTCCACTGCCGCATCT
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