mRNA_P-wetherbeei_contig6445.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6445.1.1
Unique NamemRNA_P-wetherbeei_contig6445.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6445.1.1 vs. uniprot
Match: D7FRR0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRR0_ECTSI)

HSP 1 Score: 514 bits (1323), Expect = 1.410e-172
Identity = 292/481 (60.71%), Postives = 343/481 (71.31%), Query Frame = 1 
Query:    7 LPPQVSGALPLIVLPLALWGFYNAMFLMGAKRASAVFPSFDRLKRNFVSSIEEFLPPRLLPVLSLSFLSVVVAVAVTAARLRGPPLCLSSCGECLSRWAAARPVTLSTAAAALTGAGGGVPSAASAAVGAAIAALSDGEFYSDDAATPAAVAADRLGGSGAAGGYGNGFGLNSGGERDGGEGF---------VGGGSFXGRGYACGYANGRELLAFYTVSQSAILIYLAVMVGLLTCLAWKVSEEELAQRQGAESWLKGEDPVAFDLRERMIYEVGRPGSAVRPETSAAWLAFGVVAACTFTLIGWRKWGDLPATVTAAVAVGVSAATILVSVLLLHVGFYGRLVALYRGNLCRVQYLSRLLREGSGEVECGGVSMARAWWSVRSFVLSEDLSLDYDIGGLGVSATFFIVLTSFVVAVVQICREGLKAILSPPGSYCAYASVYLTVCLIRIFGLATETYGEQQAHVALLRERVARVDALLA 1422
            +P  +SG+  L  +P+ +W FYNAMF+MGAKRAS V P FDR KR+FV+++EEFLPPRL+PVLSLSFLSVV+AV +TAARL GPPLC+SSC  CL  W  A P T               P    AA   +  A      +S +    A   A R   S AAG +       +GG   GGE F           G      G ACGYANG+ELLA+YTVSQSAILIYLAVM GLLTCLAWKVSEEELAQRQ AES LKG++P AF+LRERMI E GRPGS+VRPET+  WL FG+VAACTFTLIGWRKWGDLP T    V +G +  T L SVL+LHVGF+GRL+ALY+GNL RVQ+LS+LLREG+ + E   V  A AWW +RSFVL EDLSLDYD+GGLGVSATFFIVL SFVVA+ QI REGL A+L+PPGSYCAYASVYLTVCLIRIFGLAT+TY EQQ HV ++++ +  + A+ A
Sbjct:  149 IPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLPPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHPATS--------------PQGRGAAASTSGEASRSRSKFSPNI-VGAFEGAKRGRDSAAAGDH-----RQAGGSGGGGENFWVEADRASPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGSSVRPETTCPWLMFGLVAACTFTLIGWRKWGDLPVTAVTVVVIGANVTTTLASVLMLHVGFHGRLIALYQGNLQRVQFLSKLLREGTSKAEEPWVHAAEAWWFLRSFVLREDLSLDYDVGGLGVSATFFIVLASFVVAIAQIVREGLDAMLNPPGSYCAYASVYLTVCLIRIFGLATKTYLEQQLHVGIIQDYIDNLVAIAA 609
[Close]
BLAST of mRNA_P-wetherbeei_contig6445.1.1 vs. uniprot
Match: A0A7S3M970_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M970_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.690e-60
Identity = 107/207 (51.69%), Postives = 145/207 (70.05%), Query Frame = 1 
Query:  769 AFDLRERMIYEVGRPGSAVRPETSAAWLAFGVVAACTFTLIGWRKWGDLPATVTAAVAVGVSAATILVSVLLLHVGFYGRLVALYRGNLCRVQYLSRLLREGSGEVECGGVSMARAWWSVRSFVLSEDLSLDYDIGGLGVSATFFIVLTSFVVAVVQICREGLKAILSPPGSYCAYASVYLTVCLIRIFGLATETYGEQQAHVALLR 1389
            AF++R+ +I   G PGS+VRPE SA W+ FGV AA TFTL+GW  W  LP + TA + + ++  TIL+S L+LH+ F+GRL+ALY+ N  RV+ L++LL +   E          +WW+ R+FVL++DLSLDYDIGGL VSATF I L  F   + Q+ REGL+ +L PPGSY AYA +Y+T CLI++F LAT TY EQ  H+A+L+
Sbjct:    4 AFEMRQTLIERFGSPGSSVRPEGSATWIFFGVTAALTFTLLGWHNWYVLPPSNTATLLIILNLLTILMSTLILHLSFFGRLLALYKRNYHRVECLTQLLGKTDKEE-------LDSWWNCRNFVLNDDLSLDYDIGGLAVSATFLIALLLFGALITQLVREGLQGMLEPPGSYLAYACLYITCCLIKLFTLATNTYEEQHRHIAVLQ 203
[Close]
BLAST of mRNA_P-wetherbeei_contig6445.1.1 vs. uniprot
Match: A0A482S024_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S024_9ARCH)

HSP 1 Score: 175 bits (443), Expect = 3.880e-48
Identity = 86/187 (45.99%), Postives = 123/187 (65.78%), Query Frame = 1 
Query:  847 WLAFGVVAACTFTLIGWRKWGDLPATVTAAVAVGVSAATILVSVLLLHVGFYGRLVALYRGNLCRVQYLSRLLREGSGEVECGGVSMARAWWSVRSFVLSEDLSLDYDIGGLGVSATFFIVLTSFVVAVVQICREGLKAILSPPGSYCAYASVYLTVCLIRIFGLATETYGEQQAHVALLRERVARV 1407
            W+ FG+ AA TFTL+GW  W  L  + +A + + ++  TI+ ++L+LH+GF+GRL+ALY  N  RV +++RLL       +         WW+ RSFVL++DLSLDYDIGGL VS TF + +   +V    +  +G   +L PPGSYCAY+ +Y+T CLIRIF LAT TY EQQ H++LL++   R+
Sbjct:    2 WVFFGITAAITFTLLGWHNWHILSPSPSATLLIVLNLLTIITTILILHLGFFGRLIALYTRNFHRVAHITRLLHSQHAHAQGSTTHELDVWWNARSFVLNDDLSLDYDIGGLAVSLTFVLNVIVGIVLATVLYDQGYAGMLEPPGSYCAYSCMYITSCLIRIFQLATSTYTEQQTHLSLLQQMSVRL 188
[Close]
BLAST of mRNA_P-wetherbeei_contig6445.1.1 vs. uniprot
Match: A0A7S2B501_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B501_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.720e-41
Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = 1 
Query: 1102 SMARAWWSVRSFVLSEDLSLDYDIGGLGVSATFFIVLTSFVVAVVQICREGLKAILSPPGSYCAYASVYLTVCLIRIFGLATETYGEQQAHVALLRERVARVDALL 1419
            S   AWWSVRSFVL+EDLSLDYDIGGLGVSATF IVL SF+VAVVQI REGL A+LSPPGSYCAYASVYLTVCLIRIF LAT T+ +QQ+HVA+L   VA+ + LL
Sbjct:   13 SAIHAWWSVRSFVLAEDLSLDYDIGGLGVSATFVIVLVSFIVAVVQIVREGLHAMLSPPGSYCAYASVYLTVCLIRIFSLATLTFKQQQSHVAML---VAQEEKLL 115
[Close]
BLAST of mRNA_P-wetherbeei_contig6445.1.1 vs. uniprot
Match: A0A482RT25_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RT25_9ARCH)

HSP 1 Score: 150 bits (378), Expect = 1.530e-38
Identity = 93/269 (34.57%), Postives = 139/269 (51.67%), Query Frame = 1 
Query:   22 SGALPLIVLPLALWGFYNAMFLMGAKRASAVFPSFDRLKRNFVSSIEEFLPPRLLPVLSLSFLSVVVAVAVTAARLRGPPLCLSSCGECLSRWAAARPVTLSTAAAALTGAGGGVPSAASAAVGAAIAALSDGEFYSDDAATPAAVAADRLGGSGAAGGYGNGFGLNSGGERDGGEGFVGGGSFXGRGYACGYANGRELLAFYTVSQSAILIYLAVMVGLLTCLAWKVSEEELAQRQGAESWLKGEDPVAFDLRERMIYEVGRPGSAVR 828
            SG     +LPL++W FY+ +F++   +A+ V P F +LK +F S+IEEF  P+LLPVLS+SFL V +++ VT   L GPPLC   CG CLS W     ++LS+            P ++S                                             +NS   R G                CGYANG+ELLA+YT+SQ++ L++  V++ ++ C+AW+V+EEE+ +R+ AE+WLK E P+A++LR  +I   G P S +R
Sbjct:   59 SGNRLFALLPLSVWVFYHVLFILNPNQANLVIPGFGKLKHSFKSTIEEFFSPKLLPVLSISFLLVALSLGVTGHTLGGPPLCYHPCGTCLSSWT--NSISLSS------------PDSSS---------------------------------------------INS--YRHG----------------CGYANGKELLAYYTMSQTSFLLFCVVVLSMVVCMAWRVAEEEIEEREQAEAWLKRESPLAYELRGEVIGTHGPPASPIR 250
[Close]
BLAST of mRNA_P-wetherbeei_contig6445.1.1 vs. uniprot
Match: A0A7S3M8A9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8A9_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.280e-36
Identity = 91/251 (36.25%), Postives = 136/251 (54.18%), Query Frame = 1 
Query:   43 VLPLALWGFYNAMFLMGAKRASAVFPSFDRLKRNFVSSIEEFLPPRLLPVLSLSFLSVVVAVAVTAARLRGPPLCLSSCGECLSRWAAARPVTLSTAAAALTGAGGGVPSAASAAVGAAIAALSDGEFYSDDAATPAAVAADRLGGSGAAGGYGNGFGLNSGGERDGGEGFVGGGSFXGRGYACGYANGRELLAFYTVSQSAILIYLAVMVGLLTCLAWKVSEEELAQRQGAESWLKGEDPVAFDLRERMI 795
            +LP+++W FYN +FL+G + ++ V P F R+K +F ++IEEF  P+LLPVLS+SFL VV+++AVT  RL GPPLC   CG CL+ W  + P  LS AAAAL      +       +        D  +          V A R+G                                      CGYANG+E+L +YT+ Q++ L+++ V+V +L CLAW+V++EE  +R+ AE WLK +   AF++R+ +I
Sbjct:   94 LLPISVWLFYNVLFLIGPQHSNKVIPRFGRIKNSFKNNIEEFFSPKLLPVLSISFLCVVLSLAVTGHRLGGPPLCYHPCGVCLATWKHSIP--LSAAAAALVARVDPLMQPLVTPI--------DSPYDPLVGRMDPLVDAYRVG--------------------------------------CGYANGKEMLGYYTMGQTSFLLFIVVVVAILVCLAWRVADEEKTERRTAEEWLKRDALKAFEMRQTLI 296
[Close]
BLAST of mRNA_P-wetherbeei_contig6445.1.1 vs. uniprot
Match: A0A7S2B4U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B4U9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.550e-9
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:  901 KWGDLPATVTAAVAVGVSAATILVSVLLLHVGFYGRLVALYRGNLCRVQYLSRLL 1065
            +W +LP TV +++ + V+ ATI +S+++LHVGFYGRL ALY+ NL RVQ+LSR L
Sbjct:    4 EWQELPFTVASSIIICVNVATIFISIIILHVGFYGRLNALYQRNLSRVQFLSRCL 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6445.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRR0_ECTSI1.410e-17260.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3M970_9STRA1.690e-6051.69Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482S024_9ARCH3.880e-4845.99Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S2B501_9STRA1.720e-4177.36Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A482RT25_9ARCH1.530e-3834.57Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3M8A9_9STRA5.280e-3636.25Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2B4U9_9STRA7.550e-956.36Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6445contigP-wetherbeei_contig6445:9..3172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1437
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003500.1
Cds size1437
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6445.1.1prot_P-wetherbeei_contig6445.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6445 9..3172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186914.0565407-CDS-P-wetherbeei_contig6445:8..1301683186914.0565407-CDS-P-wetherbeei_contig6445:8..130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6445 9..130 +
1683186914.0654006-CDS-P-wetherbeei_contig6445:409..9891683186914.0654006-CDS-P-wetherbeei_contig6445:409..989Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6445 410..989 +
1683186914.0735173-CDS-P-wetherbeei_contig6445:1438..15371683186914.0735173-CDS-P-wetherbeei_contig6445:1438..1537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6445 1439..1537 +
1683186914.081616-CDS-P-wetherbeei_contig6445:1790..20261683186914.081616-CDS-P-wetherbeei_contig6445:1790..2026Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6445 1791..2026 +
1683186914.0898108-CDS-P-wetherbeei_contig6445:2527..26081683186914.0898108-CDS-P-wetherbeei_contig6445:2527..2608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6445 2528..2608 +
1683186914.0978422-CDS-P-wetherbeei_contig6445:2853..31721683186914.0978422-CDS-P-wetherbeei_contig6445:2853..3172Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6445 2854..3172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6445.1.1

>prot_P-wetherbeei_contig6445.1.1 ID=prot_P-wetherbeei_contig6445.1.1|Name=mRNA_P-wetherbeei_contig6445.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=479bp
LPLPPQVSGALPLIVLPLALWGFYNAMFLMGAKRASAVFPSFDRLKRNFV
SSIEEFLPPRLLPVLSLSFLSVVVAVAVTAARLRGPPLCLSSCGECLSRW
AAARPVTLSTAAAALTGAGGGVPSAASAAVGAAIAALSDGEFYSDDAATP
AAVAADRLGGSGAAGGYGNGFGLNSGGERDGGEGFVGGGSFGGRGYACGY
ANGRELLAFYTVSQSAILIYLAVMVGLLTCLAWKVSEEELAQRQGAESWL
KGEDPVAFDLRERMIYEVGRPGSAVRPETSAAWLAFGVVAACTFTLIGWR
KWGDLPATVTAAVAVGVSAATILVSVLLLHVGFYGRLVALYRGNLCRVQY
LSRLLREGSGEVECGGVSMARAWWSVRSFVLSEDLSLDYDIGGLGVSATF
FIVLTSFVVAVVQICREGLKAILSPPGSYCAYASVYLTVCLIRIFGLATE
TYGEQQAHVALLRERVARVDALLAAWATA
back to top

mRNA from alignment at P-wetherbeei_contig6445:9..3172+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6445.1.1 ID=mRNA_P-wetherbeei_contig6445.1.1|Name=mRNA_P-wetherbeei_contig6445.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3164bp|location=Sequence derived from alignment at P-wetherbeei_contig6445:9..3172+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCCCTACCGCCGCAGGTATCGGGGGCGCTGCCGCTGATTGTCCTCCC
GCTGGCGCTGTGGGGATTCTACAACGCCATGTTCCTCATGGGCGCCAAGC
GGGCCAGCGCCGTTTTTCCGAGGTGACTCGGTTGTTGCTTTCGGGGCTGT
TGAAATTCTTGTGCAAACGAGCCATTTCCTGAGTCGCGAGTGCGTCCCGG
ACAGGTTGGCAGATATGTGTTTGCCTGCGCGGCGGGATTGCAGGGTTGTC
TATTGCCGCATGGAAAGGCAAGGATCGTTTTCCTCCGTTGCAGCTTTTCT
CACTTTGTCCCTTTCCATGCCGCTCTGCTGGGTGGCTTCACCCGACGGCT
TCCCCGACCGACGGCTTGGTTTTGGCCCGATTCCGTCCCGGATACATGTA
GCTTCGACCGGCTGAAGCGCAACTTTGTGAGCTCCATTGAGGAGTTTCTC
CCGCCGCGGCTGCTTCCGGTCCTCTCGCTCAGCTTCCTCAGCGTCGTCGT
GGCCGTCGCCGTCACGGCCGCCCGCCTGCGCGGCCCGCCGCTCTGCCTTT
CCAGCTGCGGCGAGTGCCTTTCCCGCTGGGCCGCCGCCCGCCCGGTCACG
CTGTCGACGGCGGCCGCAGCACTCACCGGTGCCGGAGGCGGCGTGCCCAG
CGCCGCCTCTGCGGCGGTGGGAGCTGCCATTGCCGCCCTCAGCGACGGCG
AGTTCTACTCGGACGATGCCGCCACGCCCGCCGCCGTCGCGGCCGACCGC
CTCGGTGGCTCCGGCGCCGCCGGCGGTTACGGCAACGGTTTCGGCCTCAA
TTCTGGTGGCGAGCGCGACGGTGGCGAGGGGTTCGTCGGCGGCGGCAGCT
TCGGCGGGCGCGGCTACGCATGCGGGTACGCTAATGGGCGGGAGCTCCTG
GCGTTTTACACGGTCAGCCAGAGCGCCATCTTGATCTACTTGGCGGTCAT
GGTCGGACTGCTGACGTGCCTCGCCTGGAAGGTGCGGTTCTGGCAGGGGC
AGGATCGCCGGAGGACAGGCAACAGGTGTTTCTTTCCAGTAGGCGGTCGG
CGTCTTTTTAGGCAGACGGCTGCGGTTTGATTTCAAATAGGGCTGTTTTG
TTGTTTCTGCTTTCCTTGGCCCTTTCTCTCCTCATTTCTGCGAAGATTGG
CGCTTTTAAAATATGTTTGGTGCTGTCATTCGTTTCTGCCTCCATTCATG
ACAAGAAGACGGAGCCTCGAGCTCCTTGCTATCTTTCTGCTACCTTTCTT
GTTCTGCCCTTCTCTAAATTTGGGTTTTTTTTAACCAGTTCTTCCCTTAT
TGCTAGTAAACACGAGCTCTCCCTTCCTTCCGTGTCCTATGTCCGGTGAT
GACACTACTTTCTCTCTTCTCATGAGCTTTCCTTGTTTATCCTTTTCTCT
CTTCTGTGGCCGCGGTGGTGGCCACCGCAGGTGTCGGAGGAAGAGCTGGC
GCAGCGGCAGGGTGCGGAGAGCTGGCTTAAGGGGGAGGACCCCGTCGCCT
TCGACCTCCGCGAGCGCATGATCTACGAGGTGTGACAGGCAGGCGGGCGG
TCATTTCGGGACATCCTCTCTCTTCTTTTCTTTCCTTTGGTGTGTTTTTT
GCCGGTATCGCGACAAATGATGTTTTCGTTTTTAATTTGAGTGAGGCAAC
TTCTTACCACCAGCCTCTCCCCATTGCCAAGCCGCCCTGCACCAAAAATC
ATGGGCGCTGCTGCCAAATCGCGACCAAACTATCCCTAACTTGTATATGC
GACCAATCTTTTCCTTTCCGAAAACCAAGCAGGTGGGTCGGCCGGGCTCG
GCGGTGCGGCCCGAGACGAGTGCAGCATGGCTGGCCTTTGGCGTCGTGGC
TGCCTGCACCTTCACGCTCATCGGCTGGCGGAAGTGGGGCGACCTGCCGG
CGACAGTGACTGCCGCCGTGGCCGTGGGCGTCAGCGCGGCGACGATTCTA
GTGTCGGTGCTGCTGCTGCACGTCGGCTTCTACGGCCGCCTCGTCGCGCT
CTACCGGGGAAACCTGTGGTGAGTCAGTCACCGTGTTCTTAAGGTCCACA
TTTCAGGTTTGCGGCTTAATCTTTGGGTATTGAATCTTGCGGGGGTTGCG
GTTTTGTGCCTCGACCTCATCTGAAGGCCGGCAGGCTGGCAGGGAGGCAG
ACAGTCGCTTCACGTTGCTTTCTGAGTTTGGACCAAGGGATTGCCGACGC
CATGTGTTCTGCGTGTGTTCCGCTTCATTAATTAGCTGCGGGTGAACGTT
GCGATGGCAGCCACAGCAAAGAGATTGCTGTTATTATGGCTGGGCGCTTC
TTCTTGCCCGACGTCGATCGATGCAATTCTCTCTCTTCCCTCTTCATTTC
CGTCTAGACTCGCCCGTTGACCTGCTTCGTCCTCGTTTCTCTCTCCTATG
TCCCGCTTTTTCCACCCGTCTGCATTTTTCCTTCTTTTCTTCCCCTCCCT
TCTGGTCTTCGACTGTCCCTTCCACGGCGGCCATGCGTACTGGCCGGCCA
CTCCTGCCCGCGACCGCAGCCGTGTGCAATACCTGTCGCGGCTGCTCCGC
GAGGGCAGCGGGGAGGTCGAATGCGGCGGCGTCTCTATGGCCCGGGCCTG
GTGAGCGACCTGGTGCTGGGTGGCAGTTTTTCCTGTAGGGTCTTTGTTTC
GTTTCCCTCCGAATTTTCTTTAGCAAACCCGTCCAACCGTCGCTTTGTTC
CCTTCTCTTCGGTTGCTTATCTCTTCCCCTCTCTCATCTGTTCCCTTTCC
TTCCTCGCGCCGCCCCCACTGCCGCCGCCATCGCCCGTTACCACCCGCTC
GCTACCTGCCCACCGCCGCCGCCACCGTTCGCCGCTTTGCAACAGGTGGA
GCGTCCGCAGCTTCGTGCTGAGCGAGGACCTCTCCCTCGACTACGACATC
GGCGGCCTTGGTGTCTCTGCCACCTTCTTCATCGTCCTCACCTCCTTCGT
TGTCGCCGTCGTGCAGATCTGCCGAGAAGGACTGAAAGCCATTTTATCGC
CGCCGGGATCCTACTGCGCCTACGCATCGGTGTACCTGACGGTGTGCCTG
ATTCGCATCTTCGGGCTGGCGACGGAGACGTACGGGGAGCAGCAGGCGCA
CGTGGCGCTGCTGCGGGAGCGGGTGGCGCGCGTGGACGCGCTGCTAGCAG
CGTGGGCGACGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6445:9..3172+

>mRNA_P-wetherbeei_contig6445.1.1 ID=mRNA_P-wetherbeei_contig6445.1.1|Name=mRNA_P-wetherbeei_contig6445.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1437bp|location=Sequence derived from alignment at P-wetherbeei_contig6445:9..3172+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCCCTACCGCCGCAGGTATCGGGGGCGCTGCCGCTGATTGTCCTCCC
GCTGGCGCTGTGGGGATTCTACAACGCCATGTTCCTCATGGGCGCCAAGC
GGGCCAGCGCCGTTTTTCCGAGCTTCGACCGGCTGAAGCGCAACTTTGTG
AGCTCCATTGAGGAGTTTCTCCCGCCGCGGCTGCTTCCGGTCCTCTCGCT
CAGCTTCCTCAGCGTCGTCGTGGCCGTCGCCGTCACGGCCGCCCGCCTGC
GCGGCCCGCCGCTCTGCCTTTCCAGCTGCGGCGAGTGCCTTTCCCGCTGG
GCCGCCGCCCGCCCGGTCACGCTGTCGACGGCGGCCGCAGCACTCACCGG
TGCCGGAGGCGGCGTGCCCAGCGCCGCCTCTGCGGCGGTGGGAGCTGCCA
TTGCCGCCCTCAGCGACGGCGAGTTCTACTCGGACGATGCCGCCACGCCC
GCCGCCGTCGCGGCCGACCGCCTCGGTGGCTCCGGCGCCGCCGGCGGTTA
CGGCAACGGTTTCGGCCTCAATTCTGGTGGCGAGCGCGACGGTGGCGAGG
GGTTCGTCGGCGGCGGCAGCTTCGGCGGGCGCGGCTACGCATGCGGGTAC
GCTAATGGGCGGGAGCTCCTGGCGTTTTACACGGTCAGCCAGAGCGCCAT
CTTGATCTACTTGGCGGTCATGGTCGGACTGCTGACGTGCCTCGCCTGGA
AGGTGTCGGAGGAAGAGCTGGCGCAGCGGCAGGGTGCGGAGAGCTGGCTT
AAGGGGGAGGACCCCGTCGCCTTCGACCTCCGCGAGCGCATGATCTACGA
GGTGGGTCGGCCGGGCTCGGCGGTGCGGCCCGAGACGAGTGCAGCATGGC
TGGCCTTTGGCGTCGTGGCTGCCTGCACCTTCACGCTCATCGGCTGGCGG
AAGTGGGGCGACCTGCCGGCGACAGTGACTGCCGCCGTGGCCGTGGGCGT
CAGCGCGGCGACGATTCTAGTGTCGGTGCTGCTGCTGCACGTCGGCTTCT
ACGGCCGCCTCGTCGCGCTCTACCGGGGAAACCTGTGCCGTGTGCAATAC
CTGTCGCGGCTGCTCCGCGAGGGCAGCGGGGAGGTCGAATGCGGCGGCGT
CTCTATGGCCCGGGCCTGGTGGAGCGTCCGCAGCTTCGTGCTGAGCGAGG
ACCTCTCCCTCGACTACGACATCGGCGGCCTTGGTGTCTCTGCCACCTTC
TTCATCGTCCTCACCTCCTTCGTTGTCGCCGTCGTGCAGATCTGCCGAGA
AGGACTGAAAGCCATTTTATCGCCGCCGGGATCCTACTGCGCCTACGCAT
CGGTGTACCTGACGGTGTGCCTGATTCGCATCTTCGGGCTGGCGACGGAG
ACGTACGGGGAGCAGCAGGCGCACGTGGCGCTGCTGCGGGAGCGGGTGGC
GCGCGTGGACGCGCTGCTAGCAGCGTGGGCGACGGCG
back to top