mRNA_P-wetherbeei_contig644.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig644.6.1
Unique NamemRNA_P-wetherbeei_contig644.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Match: A0A2V3UJG5_9HYPH (ATP-binding protein Uup n=3 Tax=Chelatococcus TaxID=28209 RepID=A0A2V3UJG5_9HYPH)

HSP 1 Score: 253 bits (646), Expect = 1.880e-78
Identity = 121/164 (73.78%), Postives = 140/164 (85.37%), Query Frame = 1
Query:    1 PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGATLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPKTLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSAIVLVSHDRRFLQNL 492
            PLL+QASLS+++G R+CLVGRNGSGKSTLLKIAAGLI PD+G+R L  G TLRYLPQEPDL+G+ +  A+  AGLAPGDD YR  YLLE LGL G  DP  LSGGEARRAALA++LAP+PDILLLDEPTNHLDLP IEWLESEL  +RSA+VL+SHDRRF++ L
Sbjct:   19 PLLEQASLSVSSGERLCLVGRNGSGKSTLLKIAAGLITPDRGQRFLQPGTTLRYLPQEPDLTGFSTTSAYVEAGLAPGDDTYRAQYLLEQLGLAGTEDPTRLSGGEARRAALARLLAPEPDILLLDEPTNHLDLPVIEWLESELRSLRSALVLISHDRRFMETL 182          
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Match: A0A2W4MRI5_9PROT (Elongation factor 3 (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4MRI5_9PROT)

HSP 1 Score: 242 bits (617), Expect = 2.470e-78
Identity = 120/164 (73.17%), Postives = 135/164 (82.32%), Query Frame = 1
Query:    1 PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGATLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPKTLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSAIVLVSHDRRFLQNL 492
            PLL  A LS+  G R+CLVGRNGSGKSTLLKIAAGL+  D+GER +   AT+RYLPQEPDLS + +  A+  AGLAPGDD YR  YLLE LGL GE  P  LSGGEARRAALA+VLAP+PDILLLDEPTNHLDLPAIEWLESEL  MRSA+VL+SHDRRFL++L
Sbjct:   19 PLLTGAELSVGEGERLCLVGRNGSGKSTLLKIAAGLVEQDRGERFVQPTATIRYLPQEPDLSAFPTTLAYVEAGLAPGDDAYRARYLLEQLGLTGEEAPANLSGGEARRAALARVLAPEPDILLLDEPTNHLDLPAIEWLESELKAMRSALVLISHDRRFLESL 182          
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Match: A0A2U8W821_9HYPH (ATP-binding protein Uup n=3 Tax=Methylobacterium TaxID=407 RepID=A0A2U8W821_9HYPH)

HSP 1 Score: 251 bits (641), Expect = 9.120e-78
Identity = 121/164 (73.78%), Postives = 140/164 (85.37%), Query Frame = 1
Query:    1 PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGATLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPKTLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSAIVLVSHDRRFLQNL 492
            PL+++A ++IA G R CLVGRNGSGKSTLL+IAAGL+ PD+G R +  GAT+RYL QEPD +GYESV AFA AGLAPGDDP+R  YLLE+LGL G+ DP+ LSGGE RRAALAQ LAP+PDILLLDEPTNHLDLPAIEWLE+EL G RSA+VL+SHDRRFL  L
Sbjct:   20 PLIERAEIAIAPGERACLVGRNGSGKSTLLRIAAGLVEPDRGVRFVQPGATIRYLAQEPDFAGYESVLAFAEAGLAPGDDPHRARYLLESLGLTGDEDPRRLSGGEGRRAALAQALAPEPDILLLDEPTNHLDLPAIEWLEAELKGTRSALVLISHDRRFLSAL 183          
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Match: UPI00136AA3D6 (ATP-binding cassette domain-containing protein n=1 Tax=Propylenella binzhouense TaxID=2555902 RepID=UPI00136AA3D6)

HSP 1 Score: 249 bits (635), Expect = 1.100e-77
Identity = 119/164 (72.56%), Postives = 137/164 (83.54%), Query Frame = 1
Query:    1 PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGATLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPKTLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSAIVLVSHDRRFLQNL 492
            PLL   +L++  G R+CLVGRNGSGKSTLLKIAAGL+ PD GER++ +G T+RYLPQEPDLS + +  A A AGLAPGDDPYR  YLL+ LGL G  DPK LSGGEARRAALAQ LAP+PD+LLLDEPTNHLDLPAIEWLE+ELA  RSA+VL+SHDRRFL+ L
Sbjct:   22 PLLSDVALAVGPGERLCLVGRNGSGKSTLLKIAAGLVEPDAGERVVRQGVTIRYLPQEPDLSAFATTLAVAEAGLAPGDDPYRAAYLLQQLGLDGSEDPKRLSGGEARRAALAQALAPEPDVLLLDEPTNHLDLPAIEWLEAELAASRSALVLISHDRRFLERL 185          
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Match: UPI001EE10E98 (ATP-binding cassette domain-containing protein n=1 Tax=unclassified Xanthobacter TaxID=2623496 RepID=UPI001EE10E98)

HSP 1 Score: 251 bits (640), Expect = 1.260e-77
Identity = 120/164 (73.17%), Postives = 138/164 (84.15%), Query Frame = 1
Query:    1 PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGATLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPKTLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSAIVLVSHDRRFLQNL 492
            PLL  A LS++AG RVCLVGRNGSGKSTLLK+AAGL+APD G R    GAT+RYLPQEPD +G+ +  A+  AGL PGDD YR  YLLE LGL G+ DP  LSGGEARRAALA+V+AP+PD+LLLDEPTNHLDLPAIEWLESEL G++SAIVL+SHDRRFL+NL
Sbjct:   19 PLLDGADLSVSAGDRVCLVGRNGSGKSTLLKVAAGLMAPDDGTRFFQPGATVRYLPQEPDFAGFATTLAYVEAGLGPGDDAYRAQYLLEQLGLSGQEDPAHLSGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEWLESELRGLKSAIVLISHDRRFLENL 182          
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Match: A0A0U3P9T9_9HYPH (ATP-binding protein Uup n=7 Tax=Pannonibacter TaxID=227873 RepID=A0A0U3P9T9_9HYPH)

HSP 1 Score: 250 bits (639), Expect = 1.730e-77
Identity = 122/164 (74.39%), Postives = 139/164 (84.76%), Query Frame = 1
Query:    1 PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGATLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPKTLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSAIVLVSHDRRFLQNL 492
            PLL  A LS++ G R+CLVGRNGSGKSTLLKIAAG+I  D+GE  +  G T+RYLPQEPDLS YE+V  +  AGLAPGDDPYR  YLLE LGL G+ DPK+LSGGEARRAALA+ LAP+PDILLLDEPTNHLDLPAIEWLE+EL  +RSAIVL+SHDRRFL+NL
Sbjct:   19 PLLTGAELSVSEGDRLCLVGRNGSGKSTLLKIAAGMIEADKGEIFVQPGRTIRYLPQEPDLSAYETVLDYVTAGLAPGDDPYRAPYLLEVLGLTGKEDPKSLSGGEARRAALARTLAPEPDILLLDEPTNHLDLPAIEWLETELKSLRSAIVLISHDRRFLENL 182          
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Match: A0A512IKN3_9HYPH (ATP-binding protein Uup n=3 Tax=Methylobacterium TaxID=407 RepID=A0A512IKN3_9HYPH)

HSP 1 Score: 249 bits (635), Expect = 6.940e-77
Identity = 120/164 (73.17%), Postives = 136/164 (82.93%), Query Frame = 1
Query:    1 PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGATLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPKTLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSAIVLVSHDRRFLQNL 492
            PL++ A L+I+ G R CLVGRNGSGKSTL+KIAAGL+ PD+GER L  G TLRYL QEPDLSG+++V AF  AGLAPGDDPYR  YL+E+LGL GE DP  LSGGEARRAALAQ LAP+PDILLLDEPTNHLDLP IEWLE EL   R+A+VL+SHDRRFL  L
Sbjct:   20 PLIESAELAISPGERACLVGRNGSGKSTLMKIAAGLVEPDRGERFLQPGTTLRYLAQEPDLSGFDTVLAFVEAGLAPGDDPYRARYLVESLGLTGEEDPSQLSGGEARRAALAQALAPEPDILLLDEPTNHLDLPVIEWLEGELGRTRAALVLISHDRRFLSGL 183          
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Match: A0A258D7L1_9HYPH (Elongation factor 3 (Fragment) n=1 Tax=Rhizobiales bacterium 32-66-8 TaxID=1970550 RepID=A0A258D7L1_9HYPH)

HSP 1 Score: 237 bits (604), Expect = 8.510e-77
Identity = 114/164 (69.51%), Postives = 132/164 (80.49%), Query Frame = 1
Query:    1 PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGATLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPKTLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSAIVLVSHDRRFLQNL 492
            PLL  A LS+  G R+CLVGRNGSGKSTLLK+AAGL+ PD G R    GAT+RYLPQEPD  G  +  A+  AG+  GDD YR  YLLE LGL G+ +P TLSGGEARRAALA+V+AP+PD+LLLDEPTNHLDLPAIEWLESEL  +RSA+V++SHDRRFLQNL
Sbjct:   19 PLLDGAELSVGPGERLCLVGRNGSGKSTLLKVAAGLMEPDSGSRFFQPGATVRYLPQEPDFGGAPTTLAYVEAGMGEGDDAYRALYLLEQLGLTGDENPATLSGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEWLESELRSLRSALVVISHDRRFLQNL 182          
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Match: A0A2S6MUE9_9HYPH (ATP-binding protein Uup n=1 Tax=Rhodoblastus sphagnicola TaxID=333368 RepID=A0A2S6MUE9_9HYPH)

HSP 1 Score: 248 bits (634), Expect = 9.140e-77
Identity = 121/164 (73.78%), Postives = 134/164 (81.71%), Query Frame = 1
Query:    1 PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGATLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPKTLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSAIVLVSHDRRFLQNL 492
            PL+  A LS+  G R+CLVGRNGSGKSTLLKIAAG I PD G R     AT+RYLPQEPDLSG+  VH+F  AGL P D  YR  YLL+ALGL G  +PK LSGGEARRAALA+ LAPQPDILLLDEPTNHLDLPAIEWLESELAG+RSA+V++SHDRRFLQNL
Sbjct:   19 PLISSADLSVERGDRICLVGRNGSGKSTLLKIAAGEIEPDGGARFFQPDATVRYLPQEPDLSGFPDVHSFVVAGLGPSDADYRAHYLLDALGLTGSENPKNLSGGEARRAALARALAPQPDILLLDEPTNHLDLPAIEWLESELAGLRSALVIISHDRRFLQNL 182          
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Match: A0A165YNI7_9HYPH (ATP-binding protein Uup n=23 Tax=Pseudovibrio TaxID=258255 RepID=A0A165YNI7_9HYPH)

HSP 1 Score: 248 bits (634), Expect = 1.020e-76
Identity = 121/164 (73.78%), Postives = 136/164 (82.93%), Query Frame = 1
Query:    1 PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGATLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPKTLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSAIVLVSHDRRFLQNL 492
            PLL  A L +  G R+CLVGRNGSGKSTLLKIAAGL  PD+G+  L  G T+RYLPQEPDLSGY +V A+A  GLAPGDD YR  YLLE LGL GE DP+TLSGGEA+RAA+A+ LAP+PDILLLDEPTNHLDLP IEWLESEL  M+SAIVL+SHDRRFL+NL
Sbjct:   19 PLLTGAELQVGEGERICLVGRNGSGKSTLLKIAAGLAEPDKGDYFLQPGRTIRYLPQEPDLSGYPTVLAYAEGGLAPGDDQYRAKYLLEILGLTGEEDPETLSGGEAKRAAIARALAPEPDILLLDEPTNHLDLPVIEWLESELKQMKSAIVLISHDRRFLENL 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig644.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3UJG5_9HYPH1.880e-7873.78ATP-binding protein Uup n=3 Tax=Chelatococcus TaxI... [more]
A0A2W4MRI5_9PROT2.470e-7873.17Elongation factor 3 (Fragment) n=1 Tax=Proteobacte... [more]
A0A2U8W821_9HYPH9.120e-7873.78ATP-binding protein Uup n=3 Tax=Methylobacterium T... [more]
UPI00136AA3D61.100e-7772.56ATP-binding cassette domain-containing protein n=1... [more]
UPI001EE10E981.260e-7773.17ATP-binding cassette domain-containing protein n=1... [more]
A0A0U3P9T9_9HYPH1.730e-7774.39ATP-binding protein Uup n=7 Tax=Pannonibacter TaxI... [more]
A0A512IKN3_9HYPH6.940e-7773.17ATP-binding protein Uup n=3 Tax=Methylobacterium T... [more]
A0A258D7L1_9HYPH8.510e-7769.51Elongation factor 3 (Fragment) n=1 Tax=Rhizobiales... [more]
A0A2S6MUE9_9HYPH9.140e-7773.78ATP-binding protein Uup n=1 Tax=Rhodoblastus sphag... [more]
A0A165YNI7_9HYPH1.020e-7673.78ATP-binding protein Uup n=23 Tax=Pseudovibrio TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig644contigP-wetherbeei_contig644:8627..9118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1336208.JADY01000009_gene2597
Preferred nameuup
PFAMsABC_tran,ABC_tran_CTD
Model size492
Max annot lvl204441|Rhodospirillales
KEGG koko:K15738
KEGG TC3.A.1.120.6
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.75e-77
EggNOG OGsCOG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2TR3X@28211|Alphaproteobacteria,2JPQA@204441|Rhodospirillales
DescriptionCOG0488 ATPase components of ABC transporters with duplicated ATPase domains
Cds size492
COG categoryS
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186913.7985382-CDS-P-wetherbeei_contig644:8626..91181683186913.7985382-CDS-P-wetherbeei_contig644:8626..9118Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig644 8627..9118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig644.6.1prot_P-wetherbeei_contig644.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig644 8627..9118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig644.6.1

>prot_P-wetherbeei_contig644.6.1 ID=prot_P-wetherbeei_contig644.6.1|Name=mRNA_P-wetherbeei_contig644.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
PLLQQASLSIAAGTRVCLVGRNGSGKSTLLKIAAGLIAPDQGERILSRGA
TLRYLPQEPDLSGYESVHAFAAAGLAPGDDPYRVDYLLEALGLRGESDPK
TLSGGEARRAALAQVLAPQPDILLLDEPTNHLDLPAIEWLESELAGMRSA
IVLVSHDRRFLQNL
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mRNA from alignment at P-wetherbeei_contig644:8627..9118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig644.6.1 ID=mRNA_P-wetherbeei_contig644.6.1|Name=mRNA_P-wetherbeei_contig644.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig644:8627..9118+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGTTGCAGCAGGCAAGCCTGTCCATTGCAGCAGGCACGCGGGTCTG TCTGGTGGGGCGTAATGGATCAGGCAAATCCACCCTGCTTAAAATCGCCG CAGGCCTGATTGCGCCGGATCAGGGCGAGCGTATTCTGTCGCGGGGGGCG ACGTTGCGCTATCTGCCGCAGGAGCCGGATCTTTCCGGTTATGAAAGCGT GCATGCCTTTGCAGCAGCCGGCCTGGCGCCGGGGGATGATCCCTACCGGG TGGACTATCTGCTGGAGGCGCTGGGGCTACGCGGCGAGAGCGATCCCAAA ACCCTGTCGGGCGGTGAAGCGCGCCGCGCCGCGCTGGCACAGGTGCTGGC CCCGCAGCCGGATATTCTGCTGCTGGATGAACCGACCAACCATCTGGATC TGCCTGCCATCGAATGGCTGGAAAGTGAACTGGCGGGAATGCGTTCAGCG ATTGTGCTGGTCAGTCACGACCGGCGCTTTCTGCAAAATCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig644:8627..9118+

>mRNA_P-wetherbeei_contig644.6.1 ID=mRNA_P-wetherbeei_contig644.6.1|Name=mRNA_P-wetherbeei_contig644.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig644:8627..9118+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGTTGCAGCAGGCAAGCCTGTCCATTGCAGCAGGCACGCGGGTCTG
TCTGGTGGGGCGTAATGGATCAGGCAAATCCACCCTGCTTAAAATCGCCG
CAGGCCTGATTGCGCCGGATCAGGGCGAGCGTATTCTGTCGCGGGGGGCG
ACGTTGCGCTATCTGCCGCAGGAGCCGGATCTTTCCGGTTATGAAAGCGT
GCATGCCTTTGCAGCAGCCGGCCTGGCGCCGGGGGATGATCCCTACCGGG
TGGACTATCTGCTGGAGGCGCTGGGGCTACGCGGCGAGAGCGATCCCAAA
ACCCTGTCGGGCGGTGAAGCGCGCCGCGCCGCGCTGGCACAGGTGCTGGC
CCCGCAGCCGGATATTCTGCTGCTGGATGAACCGACCAACCATCTGGATC
TGCCTGCCATCGAATGGCTGGAAAGTGAACTGGCGGGAATGCGTTCAGCG
ATTGTGCTGGTCAGTCACGACCGGCGCTTTCTGCAAAATCTG
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