mRNA_P-wetherbeei_contig644.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig644.1.1
Unique NamemRNA_P-wetherbeei_contig644.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig644.1.1 vs. uniprot
Match: A0A3C0TY07_9PROT (2-Hacid_dh_C domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TY07_9PROT)

HSP 1 Score: 189 bits (480), Expect = 2.200e-57
Identity = 91/124 (73.39%), Postives = 102/124 (82.26%), Query Frame = 1
Query:    1 MQLFIYEPAYRRLQAQIHAICPDVRPILMGDDCRIVLEGRELTPEEFCPDIAWISTDVFFTPATRDFLGLLAKCPPLKWVQSAAAGVDLPIFQTIGKKTEIYTNSNGAAKSIAEFVFANVIALF 372
            MQLFIYEPAYRRLQ++IHAICP VRPIL+  DCR+ L+GREL P EF P+ AWIS D+FF+PA RDF  LL   P LKW+QSAAAG D PIFQ + KKTEIYTNSNGAAKSIAEF+FANVI  F
Sbjct:    1 MQLFIYEPAYRRLQSEIHAICPQVRPILIYKDCRVELDGRELPPAEFKPEAAWISPDLFFSPAARDFFRLLLGGPRLKWLQSAAAGFDNPIFQDLAKKTEIYTNSNGAAKSIAEFIFANVIEYF 124          
BLAST of mRNA_P-wetherbeei_contig644.1.1 vs. uniprot
Match: A0A353LUH0_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LUH0_9PROT)

HSP 1 Score: 146 bits (369), Expect = 4.200e-43
Identity = 73/125 (58.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    1 MQLFIYEPAYRRLQAQIHAICPDVRPILMGDDCRIVLEGRELTPEEFCPDIAWISTDVFFTPATRDFLGLLAKCPPLKWVQSAAAGVDLPIFQTIGKKTE-IYTNSNGAAKSIAEFVFANVIALF 372
            M+LFI+E AYRRL+ +IHAICP V P LM  D  I L G+ L  E+  P+IAWISTD+FF   +RDFL  + KC  LKW+QS AAG D PIFQ +G K   IYTNS GA KSIAEFV   V+  F
Sbjct:    1 MKLFIFEAAYRRLETEIHAICPAVEPYLMAADGTITLHGKPLASEDVTPEIAWISTDLFFQGPSRDFLRFVLKCDSLKWIQSGAAGFDNPIFQALGSKPGVIYTNSTGAGKSIAEFVMGAVLNYF 125          
BLAST of mRNA_P-wetherbeei_contig644.1.1 vs. uniprot
Match: A0A352KDA1_9PROT (2-Hacid_dh_C domain-containing protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KDA1_9PROT)

HSP 1 Score: 148 bits (373), Expect = 4.210e-41
Identity = 74/125 (59.20%), Postives = 87/125 (69.60%), Query Frame = 1
Query:    1 MQLFIYEPAYRRLQAQIHAICPDVRPILMGDDCRIVLEGRELTPEEFCPDIAWISTDVFFTPATRDFLGLLAKCPPLKWVQSAAAGVDLPIFQTIGKKTE-IYTNSNGAAKSIAEFVFANVIALF 372
            M+LFI+E AYRRL+A+IHAICP V P LM  D  I L G+ L  E+  P+IAWISTD+FF   +RDFL  + KC  LKW+QS AAG D PIFQ +G K   IYTNS GA KSIAEFV   V+  F
Sbjct:   19 MKLFIFEAAYRRLEAEIHAICPAVEPYLMAADGTITLHGKPLASEDVTPEIAWISTDLFFQGPSRDFLRFVLKCDSLKWIQSGAAGFDNPIFQALGSKPGVIYTNSTGAGKSIAEFVMGAVLNYF 143          
BLAST of mRNA_P-wetherbeei_contig644.1.1 vs. uniprot
Match: A0A1E4H003_9CAUL (2-Hacid_dh_C domain-containing protein n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4H003_9CAUL)

HSP 1 Score: 105 bits (262), Expect = 7.710e-25
Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    1 MQLFIYEPAYRRLQAQIHAICPDVRPILMGDDCRIVLEGRELTPEEFCPDIAWISTDVFFTPATRDFLGLLAKCPPLKWVQSAAAGVDLPIFQTIGKKTEIYTNSNGAAKSIAEFVFANVIALF 372
            M+L IYEP++RRL+A+I A+   V P+LM D   + L G  +  +    + AW + DVFF P  R F+  + K P LKWVQS AAG D  +F  I +K    T S+G A  ++E+V A V+  F
Sbjct:    1 MRLLIYEPSFRRLEAEISALGSAVEPLLMSDSGEVTLNGAPVAEDAVNAEAAWTNADVFFGPCARAFMRAMLKSPDLKWVQSGAAGFDNAVFGQIVQKGATLTTSHGQAVGMSEYVLAGVLDAF 124          
BLAST of mRNA_P-wetherbeei_contig644.1.1 vs. uniprot
Match: A0A1G2VZB9_9CAUL (2-Hacid_dh_C domain-containing protein n=2 Tax=Phenylobacterium TaxID=20 RepID=A0A1G2VZB9_9CAUL)

HSP 1 Score: 102 bits (254), Expect = 1.110e-23
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 MQLFIYEPAYRRLQAQIHAICPDVRPILMGDDCRIVLEGRELTPEEFCPDIAWISTDVFFTPATRDFLGLLAKCPPLKWVQSAAAGVDLPIFQTIGKKTEIYTNSNGAAKSIAEFVFANVI 363
            M+L IYEP++RR++AQI  + P V P+L+     +   G  L  E    D AW + DVFF+P  R F+  + K P LKWVQS AAG D P+F  I +K    T S+G A  +A++V   V+
Sbjct:    1 MRLLIYEPSFRRIEAQIAELGPAVEPLLVTTSGEVTSNGAVLDAESVDADAAWTNADVFFSPVARAFMVAMLKSPGLKWVQSGAAGFDNPVFGQIVQKGATLTTSHGQAVGMADYVMWGVL 121          
BLAST of mRNA_P-wetherbeei_contig644.1.1 vs. uniprot
Match: A0A839ZW59_9CAUL (Phosphoglycerate dehydrogenase-like enzyme n=1 Tax=Phenylobacterium haematophilum TaxID=98513 RepID=A0A839ZW59_9CAUL)

HSP 1 Score: 77.8 bits (190), Expect = 1.680e-14
Identity = 40/123 (32.52%), Postives = 66/123 (53.66%), Query Frame = 1
Query:    1 MQLFIYEPAYRRLQAQIHAICPDVRPILMGDDCRIVLEGRELTPEEFCPDIAWISTDVFFTPATRDFLGLLAKCPPLKWVQSAAAGVDLPIFQTIGKKTEIYTNSNGAAKSIAEFVFANVIAL 369
            MQ  +    Y R+  ++ A+ PD+  +++  D  + L G    P    PDI W+S D F      D+   LA  P  +WVQ+A AG+D P+F+ + ++    TNS+  A +IAE+V  + ++L
Sbjct:    1 MQALLLRAPYERIADRLAALAPDLDVVVLEPDGGLTLRGAPFDPSGLKPDIWWLSLDAFGKRG-GDYFPRLAASPDARWVQTAFAGLDNPMFKPLAREGLTVTNSSAQAPAIAEYVTIHALSL 122          
BLAST of mRNA_P-wetherbeei_contig644.1.1 vs. uniprot
Match: A0A0Q8U8J7_9CAUL (2-Hacid_dh_C domain-containing protein n=3 Tax=unclassified Phenylobacterium TaxID=2640670 RepID=A0A0Q8U8J7_9CAUL)

HSP 1 Score: 69.3 bits (168), Expect = 2.030e-11
Identity = 37/123 (30.08%), Postives = 64/123 (52.03%), Query Frame = 1
Query:    1 MQLFIYEPAYRRLQAQIHAICPDVRPILMGDDCRIVLEGRELTPEEFCPDIAWISTDVFFTPATRDFLGLLAKCPPLKWVQSAAAGVDLPIFQTIGKKTEIYTNSNGAAKSIAEFVFANVIAL 369
            MQ  +    Y R+  ++ A+ P +  +++  D  + L G    P     +I W+S D F      D+   LA  P  +WVQ+A AG+D P+F+ + ++    TNS+  A +IAE+V  + ++L
Sbjct:    1 MQALLLRAPYDRISERLAALAPALDVVVLEPDGGLTLNGAAFDPAGLKAEIWWLSLDAFGKRG-GDYFPRLAGSPDARWVQTAFAGLDNPMFKPLAREGLTVTNSSAQAPAIAEYVTIHALSL 122          
BLAST of mRNA_P-wetherbeei_contig644.1.1 vs. uniprot
Match: A0A6B1H605_9ACTN (D-2-hydroxyacid dehydrogenase n=3 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1H605_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 1.700e-8
Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  100 RIVLEGRELTPEEFCPDIAWISTDVFFTPATRDFLGLLAKCPPLKWVQSAAAGVDLPIFQTIGKKTEIYTNSNGAAKSIAEFVFANVIALF 372
            R+  +G+   P +  P++ W+S+DVFF      F  +  + P  +W+QSAAAGVDL  +Q +  +     N++  A  IAE+V   V+ +F
Sbjct:   48 RLADDGQLDAPPDAHPEVGWLSSDVFFGGLVDRFFEIAEQSPDFRWLQSAAAGVDLDGYQRLMDRGARICNAHLTAIPIAEYVLRAVLDVF 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig644.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A3C0TY07_9PROT2.200e-5773.392-Hacid_dh_C domain-containing protein n=1 Tax=Alp... [more]
A0A353LUH0_9PROT4.200e-4358.40Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A352KDA1_9PROT4.210e-4159.202-Hacid_dh_C domain-containing protein n=3 Tax=Alp... [more]
A0A1E4H003_9CAUL7.710e-2541.942-Hacid_dh_C domain-containing protein n=1 Tax=Phe... [more]
A0A1G2VZB9_9CAUL1.110e-2342.152-Hacid_dh_C domain-containing protein n=2 Tax=Phe... [more]
A0A839ZW59_9CAUL1.680e-1432.52Phosphoglycerate dehydrogenase-like enzyme n=1 Tax... [more]
A0A0Q8U8J7_9CAUL2.030e-1130.082-Hacid_dh_C domain-containing protein n=3 Tax=unc... [more]
A0A6B1H605_9ACTN1.700e-834.07D-2-hydroxyacid dehydrogenase n=3 Tax=Acidimicrobi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig644contigP-wetherbeei_contig644:36..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1333998.M2A_0157
PFAMs2-Hacid_dh,2-Hacid_dh_C
Model size372
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.9e-19
EggNOG OGsCOG0111@1|root,COG0111@2|Bacteria,1RKWR@1224|Proteobacteria,2UB4X@28211|Alphaproteobacteria
DescriptionD-isomer specific 2-hydroxyacid dehydrogenase family protein
Cds size372
COG categoryEH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186913.7011082-CDS-P-wetherbeei_contig644:35..4071683186913.7011082-CDS-P-wetherbeei_contig644:35..407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig644 36..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig644.1.1prot_P-wetherbeei_contig644.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig644 36..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig644.1.1

>prot_P-wetherbeei_contig644.1.1 ID=prot_P-wetherbeei_contig644.1.1|Name=mRNA_P-wetherbeei_contig644.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MQLFIYEPAYRRLQAQIHAICPDVRPILMGDDCRIVLEGRELTPEEFCPD
IAWISTDVFFTPATRDFLGLLAKCPPLKWVQSAAAGVDLPIFQTIGKKTE
IYTNSNGAAKSIAEFVFANVIALF
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mRNA from alignment at P-wetherbeei_contig644:36..407-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig644.1.1 ID=mRNA_P-wetherbeei_contig644.1.1|Name=mRNA_P-wetherbeei_contig644.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig644:36..407- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCTTTTCATCTATGAACCCGCTTACCGGCGGTTACAGGCACAAAT CCACGCGATATGCCCCGATGTACGGCCGATTCTGATGGGTGATGATTGCC GGATTGTCCTGGAGGGCCGGGAATTAACCCCGGAAGAATTTTGCCCGGAC ATTGCCTGGATCAGCACGGATGTGTTTTTTACGCCAGCCACCCGCGATTT TCTGGGCCTGCTGGCGAAGTGTCCGCCCCTGAAATGGGTACAAAGCGCCG CCGCGGGGGTGGATCTGCCGATTTTTCAGACAATTGGAAAGAAAACGGAG ATTTACACCAACAGCAATGGGGCGGCGAAATCAATTGCCGAATTTGTCTT TGCCAATGTGATCGCACTGTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig644:36..407-

>mRNA_P-wetherbeei_contig644.1.1 ID=mRNA_P-wetherbeei_contig644.1.1|Name=mRNA_P-wetherbeei_contig644.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig644:36..407- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCTTTTCATCTATGAACCCGCTTACCGGCGGTTACAGGCACAAAT
CCACGCGATATGCCCCGATGTACGGCCGATTCTGATGGGTGATGATTGCC
GGATTGTCCTGGAGGGCCGGGAATTAACCCCGGAAGAATTTTGCCCGGAC
ATTGCCTGGATCAGCACGGATGTGTTTTTTACGCCAGCCACCCGCGATTT
TCTGGGCCTGCTGGCGAAGTGTCCGCCCCTGAAATGGGTACAAAGCGCCG
CCGCGGGGGTGGATCTGCCGATTTTTCAGACAATTGGAAAGAAAACGGAG
ATTTACACCAACAGCAATGGGGCGGCGAAATCAATTGCCGAATTTGTCTT
TGCCAATGTGATCGCACTGTTT
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